mRNA_P-littoralis_Contig6.54.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.54.1
Unique NamemRNA_P-littoralis_Contig6.54.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 2.300e-59
Identity = 97/114 (85.09%), Postives = 107/114 (93.86%), Query Frame = 1
Query:    1 MIMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVY 342
            MI+QLGQPLFWMTINPAD NSP+VM LAGV LDV+S+LK+DLP YVKRLQ IA DPVASA+FFH+ IDAV++TLLRFGAKDGDGGVLGR+KAYVGMTEEQRRLTLHCHLLVWVY
Sbjct: 2767 MIIQLGQPLFWMTINPADSNSPVVMKLAGVDLDVSSRLKTDLPQYVKRLQLIAADPVASAEFFHVMIDAVMKTLLRFGAKDGDGGVLGRVKAYVGMTEEQRRLTLHCHLLVWVY 2880          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.560e-54
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1
Query:    4 IMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            IMQ+GQPLFW+TINPAD NSPIVM+LAGV+LDV S+LK+D P Y  +L+ +A DPVASADFFH TIDAVL  LLRFGA DGDGGVLGR+K YVGMTEEQ+RLTLHCHLLVWVYG
Sbjct:  561 IMQMGQPLFWLTINPADVNSPIVMVLAGVELDVTSRLKADFPAYADKLRFVANDPVASADFFHATIDAVLTCLLRFGACDGDGGVLGRVKGYVGMTEEQKRLTLHCHLLVWVYG 674          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 192 bits (488), Expect = 1.600e-54
Identity = 90/114 (78.95%), Postives = 101/114 (88.60%), Query Frame = 1
Query:    4 IMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            IMQ+GQPLFW+TINPAD NSPIVM+LAGV+LDV S+LK+D P Y  +L+ +A DPVASADFFH TIDAVL  LLRFGA DGDGGVLGR+K YVGMTEEQ+RLTLHCHLLVWVYG
Sbjct:  641 IMQMGQPLFWLTINPADVNSPIVMVLAGVELDVTSRLKADFPAYADKLRFVANDPVASADFFHATIDAVLTCLLRFGACDGDGGVLGRVKGYVGMTEEQKRLTLHCHLLVWVYG 754          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 184 bits (468), Expect = 7.990e-52
Identity = 84/114 (73.68%), Postives = 98/114 (85.96%), Query Frame = 1
Query:    4 IMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            IMQ+GQPL WMTINPAD NSPIV+ + GV +DV+SKLK++ PDYV +L+ +A DPVASADFFH TID VL  LLRFGA DGDGG+LGR+K YVGMTEEQ+RL LHCHLLVWV+G
Sbjct:  642 IMQMGQPLIWMTINPADVNSPIVVKMCGVDIDVSSKLKANFPDYVDKLRLVANDPVASADFFHNTIDGVLSCLLRFGASDGDGGILGRVKGYVGMTEEQKRLVLHCHLLVWVFG 755          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 176 bits (447), Expect = 5.410e-49
Identity = 81/114 (71.05%), Postives = 95/114 (83.33%), Query Frame = 1
Query:    4 IMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            ++Q+GQPL W+TI+PAD NSPIVM LAGV +DV SKLKSD PDY ++L+ +A DPVASA F+H TI  VL  LLRFGA DGDGGVLGR+K YVGMTEEQ+RL LH HLLVW+YG
Sbjct:  706 MIQMGQPLIWLTISPADHNSPIVMKLAGVDIDVTSKLKSDFPDYTEKLRLVASDPVASAQFYHNTIQGVLTCLLRFGASDGDGGVLGRVKGYVGMTEEQKRLMLHAHLLVWIYG 819          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 170 bits (431), Expect = 7.720e-47
Identity = 82/114 (71.93%), Postives = 93/114 (81.58%), Query Frame = 1
Query:    4 IMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            IMQ+GQPL+WMT +PAD NSPIV+ LAGV +DV S+LKSD PDYV+RL+ +A D V SA F+H    AVL   LRFGA DGDGGVLGR+KA VGMTEEQRRL LHCHLLVWVYG
Sbjct:  650 IMQMGQPLWWMTFSPADTNSPIVLQLAGVTIDVTSRLKSDFPDYVERLRLVACDHVTSAFFYHSVTKAVLTCWLRFGATDGDGGVLGRVKACVGMTEEQRRLMLHCHLLVWVYG 763          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5KK28_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK28_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 2.610e-43
Identity = 70/115 (60.87%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 MIMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            M +  GQP FWMT+NP+D NSP VM   G  +D++S     +PD+ KRL  I  DPVASA FFH TI+AVL+ +LRF A DGDGG LG IKAY+GMTEEQ RL LH HL+VWV+G
Sbjct:   65 MFILFGQPFFWMTVNPSDLNSPFVMHYGGHNIDLSSTCHEQMPDFRKRLDIIVNDPVASAIFFHETIEAVLKYILRFQANDGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHG 179          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE)

HSP 1 Score: 146 bits (369), Expect = 2.170e-39
Identity = 69/115 (60.00%), Postives = 84/115 (73.04%), Query Frame = 1
Query:    1 MIMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            M +  GQP FWMT+NP+D NSP VM   G  ++++S     +PD+ KRL  I  DPVASA FFH TI+AVL+ +LRF A DGDGG LG IKAY+GMTEEQ RL LH HL+VWV+G
Sbjct:  375 MFILFGQPFFWMTVNPSDLNSPFVMHYGGHDINLSSTCHEQMPDFRKRLDIIVNDPVASAIFFHETIEAVLKYILRFQANDGDGGPLGNIKAYIGMTEEQHRLMLHGHLMVWVHG 489          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.330e-38
Identity = 70/115 (60.87%), Postives = 83/115 (72.17%), Query Frame = 1
Query:    1 MIMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            M M  GQP FWMT+NP+D NSP VM   G  +D++S     +PD+ KRL  I  DPVASA FFH TI+AVL+ +LRF A  GDGG LG IKAY+GMTEEQ RL LH HL+VWV+G
Sbjct:  419 MSMLFGQPFFWMTVNPSDLNSPFVMHYGGHDIDLSSTCHEQMPDFRKRLDIIVNDPVASAIFFHGTIEAVLKYILRFQANYGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHG 533          
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Match: A0A6H5K355_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K355_9PHAE)

HSP 1 Score: 130 bits (327), Expect = 5.840e-33
Identity = 65/115 (56.52%), Postives = 76/115 (66.09%), Query Frame = 1
Query:    1 MIMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQSIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQRRLTLHCHLLVWVYG 345
            M +Q G P FWMT NP+D NSP VM                  +Y KRL     DPVASA FFH T++AV++ +LRFGAKDGDGG LG IKAY+GMTEEQ RL LH HL+VWV+G
Sbjct:  328 MFIQFGLPFFWMTANPSDVNSPCVMQCG---------------EYRKRLDITVNDPVASATFFHETMEAVVKYILRFGAKDGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHG 427          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.54.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KTA2_9PHAE2.300e-5985.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8N9_9PHAE1.560e-5478.95Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5L0L4_9PHAE1.600e-5478.95Helitron_like_N domain-containing protein n=1 Tax=... [more]
D7G3U9_ECTSI7.990e-5273.68ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5KIB1_9PHAE5.410e-4971.05ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JN07_9PHAE7.720e-4771.93ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KK28_9PHAE2.610e-4360.87Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K657_9PHAE2.170e-3960.00Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K1H7_9PHAE2.330e-3860.87Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K355_9PHAE5.840e-3356.52Helitron_like_N domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:183037..183381 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7G3U9
PFAMsHelitron_like_N,PIF1
Model size345
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.31e-52
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
Cds size345
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791233.44878-CDS-P-littoralis_Contig6:183036..1833811680791233.44878-CDS-P-littoralis_Contig6:183036..183381Pylaiella littoralis U1_48CDSP-littoralis_Contig6 183037..183381 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.54.1prot_P-littoralis_Contig6.54.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 183037..183381 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.54.1

>prot_P-littoralis_Contig6.54.1 ID=prot_P-littoralis_Contig6.54.1|Name=mRNA_P-littoralis_Contig6.54.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MIMQLGQPLFWMTINPADKNSPIVMMLAGVQLDVNSKLKSDLPDYVKRLQ
SIAGDPVASADFFHITIDAVLETLLRFGAKDGDGGVLGRIKAYVGMTEEQ
RRLTLHCHLLVWVYG
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mRNA from alignment at P-littoralis_Contig6:183037..183381-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.54.1 ID=mRNA_P-littoralis_Contig6.54.1|Name=mRNA_P-littoralis_Contig6.54.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig6:183037..183381- (Pylaiella littoralis U1_48)
ATGATTATGCAACTCGGGCAGCCGCTGTTTTGGATGACTATCAATCCCGC CGACAAGAACAGCCCCATTGTGATGATGTTGGCGGGTGTGCAACTTGATG TCAACAGCAAACTCAAGTCGGACCTTCCCGACTACGTCAAGAGGCTTCAA TCCATCGCCGGTGACCCCGTCGCCTCTGCAGATTTTTTTCACATCACGAT AGATGCCGTCCTTGAGACTCTTCTGCGATTCGGGGCAAAGGATGGAGACG GGGGAGTCTTGGGCAGAATAAAGGCGTACGTGGGGATGACCGAGGAGCAA CGAAGGCTAACGCTTCACTGCCATCTGTTGGTTTGGGTGTACGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:183037..183381-

>mRNA_P-littoralis_Contig6.54.1 ID=mRNA_P-littoralis_Contig6.54.1|Name=mRNA_P-littoralis_Contig6.54.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig6:183037..183381- (Pylaiella littoralis U1_48)
ATGATTATGCAACTCGGGCAGCCGCTGTTTTGGATGACTATCAATCCCGC
CGACAAGAACAGCCCCATTGTGATGATGTTGGCGGGTGTGCAACTTGATG
TCAACAGCAAACTCAAGTCGGACCTTCCCGACTACGTCAAGAGGCTTCAA
TCCATCGCCGGTGACCCCGTCGCCTCTGCAGATTTTTTTCACATCACGAT
AGATGCCGTCCTTGAGACTCTTCTGCGATTCGGGGCAAAGGATGGAGACG
GGGGAGTCTTGGGCAGAATAAAGGCGTACGTGGGGATGACCGAGGAGCAA
CGAAGGCTAACGCTTCACTGCCATCTGTTGGTTTGGGTGTACGGG
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