mRNA_P-littoralis_Contig6.285.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.285.2
Unique NamemRNA_P-littoralis_Contig6.285.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig6.285.2 vs. uniprot
Match: D7FIL8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIL8_ECTSI)

HSP 1 Score: 456 bits (1172), Expect = 1.730e-143
Identity = 267/447 (59.73%), Postives = 315/447 (70.47%), Query Frame = 1
Query:  376 VSPLWTAFLKSRDGVERLGFTPLKKWESFVEEDISVAFLNWYKDQVLGTKSVPQALRIAGLPDGFPEFCHWVAAGHHNACEGTHLKVGFEPFAVEHVKKVEAESRPVGRTSPPPTA-----------------AVGVSTSGSGRGTTAPVSEVGGFVAYSAAALEGLHCHNIGPKARKRDRRARKGGAVANGTTYFALKMQSAITELEGMYDRKDESSKS--AVARAVGIGHRAEDEIRELMRGDN--DTNPDETAGEVLGAAFADSRLPNGTLAMLSHLKRARAYRRRAERQQECIENELERCLGRLARVEAQYLSLIAETNGQESSLASCLARARPLIEAGFVLIEKGSMAQARGNYDDAIKLLEVHVNRAAAGGA-ADSSEIKAARELLGTALCNRSVACYRLGDAYSGKRDAERAVEDCPGPMAQEQLKRSQTAQQALKAAAA 1650
            VSPLWTAF KSR+G ERLGFT LKKW+SF + D+   F +WY DQVLG++SVPQAL I  LP+GFPEFCHWVAA +H +C G  +K GFEPFA  +VK+VE E +PVGR+SPPP                   A G +T+G   G T        F + +A A E      + PKARKRDRRARKGG V NG    A K+Q+ ITELEG+    D   +   A A+A+  G+RAEDE+R+LMRG++  D +   T  EVLG AFADS LPNGTL MLSHLKRARAYRRRA+RQQEC+ENELERCLGRLARVE QYL+L+AET+GQESSLASCLARARPL++  F L+  G    A   YDDA+KLLEVHV++A  G   A++ E K ARELLG ALCNRSVA +RLGD YSG RDAERA  +CP PMAQEQLKRS+   QAL  AAA
Sbjct:  122 VSPLWTAFAKSREGAERLGFTALKKWQSFAK-DMLKGFPDWYSDQVLGSRSVPQALMIEELPNGFPEFCHWVAAENHTSC-GVKVKAGFEPFAKTYVKQVEDEGKPVGRSSPPPXXXXXXXXXXXXXXXXGGMAAGAATAG---GVT--------FRSGTAPASEPPLGAGLDPKARKRDRRARKGGTVGNGPN-IAQKLQTVITELEGVTGSDDYDGRKGGAAAKAMAAGNRAEDEVRDLMRGEDIIDESAAATGVEVLGPAFADSSLPNGTLTMLSHLKRARAYRRRADRQQECLENELERCLGRLARVEKQYLALVAETSGQESSLASCLARARPLVKQSFELVGAGDARLAMDGYDDAVKLLEVHVDKAQRGRREAETPEGKEARELLGLALCNRSVASFRLGDCYSGMRDAERAASECPCPMAQEQLKRSKDYLQALGGAAA 554          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.285.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIL8_ECTSI1.730e-14359.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:1143870..1157481 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size3761
Hectar predicted targeting categoryother localisation
Exons10
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-27_000230.1
Cds size1551
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.285.2prot_P-littoralis_Contig6.285.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 1145942..1157343 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791243.9904044-UTR-P-littoralis_Contig6:1143869..11459411680791243.9904044-UTR-P-littoralis_Contig6:1143869..1145941Pylaiella littoralis U1_48UTRP-littoralis_Contig6 1143870..1145941 -
1680791244.1228669-UTR-P-littoralis_Contig6:1157343..11574811680791244.1228669-UTR-P-littoralis_Contig6:1157343..1157481Pylaiella littoralis U1_48UTRP-littoralis_Contig6 1157344..1157481 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791244.004432-CDS-P-littoralis_Contig6:1145941..11460011680791244.004432-CDS-P-littoralis_Contig6:1145941..1146001Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1145942..1146001 -
1680791244.0231295-CDS-P-littoralis_Contig6:1148458..11485391680791244.0231295-CDS-P-littoralis_Contig6:1148458..1148539Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1148459..1148539 -
1680791244.0326502-CDS-P-littoralis_Contig6:1150175..11503191680791244.0326502-CDS-P-littoralis_Contig6:1150175..1150319Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1150176..1150319 -
1680791244.0420399-CDS-P-littoralis_Contig6:1151076..11512681680791244.0420399-CDS-P-littoralis_Contig6:1151076..1151268Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1151077..1151268 -
1680791244.0512567-CDS-P-littoralis_Contig6:1152208..11523911680791244.0512567-CDS-P-littoralis_Contig6:1152208..1152391Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1152209..1152391 -
1680791244.0607982-CDS-P-littoralis_Contig6:1152905..11529701680791244.0607982-CDS-P-littoralis_Contig6:1152905..1152970Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1152906..1152970 -
1680791244.0733624-CDS-P-littoralis_Contig6:1153832..11539501680791244.0733624-CDS-P-littoralis_Contig6:1153832..1153950Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1153833..1153950 -
1680791244.0825768-CDS-P-littoralis_Contig6:1154979..11552091680791244.0825768-CDS-P-littoralis_Contig6:1154979..1155209Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1154980..1155209 -
1680791244.0917192-CDS-P-littoralis_Contig6:1155925..11560311680791244.0917192-CDS-P-littoralis_Contig6:1155925..1156031Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1155926..1156031 -
1680791244.1086388-CDS-P-littoralis_Contig6:1156971..11573431680791244.1086388-CDS-P-littoralis_Contig6:1156971..1157343Pylaiella littoralis U1_48CDSP-littoralis_Contig6 1156972..1157343 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.285.2

>prot_P-littoralis_Contig6.285.2 ID=prot_P-littoralis_Contig6.285.2|Name=mRNA_P-littoralis_Contig6.285.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=517bp
MWGESGSEAEVEVPKSKRTTKKAAAGSSKNSKAAANGGGGGKAGSASSTS
TSTSRPAAAAGPSKKVKPAAAGTRKKKPSVSPLWTAFLKSRDGVERLGFT
PLKKWESFVEEDISVAFLNWYKDQVLGTKSVPQALRIAGLPDGFPEFCHW
VAAGHHNACEGTHLKVGFEPFAVEHVKKVEAESRPVGRTSPPPTAAVGVS
TSGSGRGTTAPVSEVGGFVAYSAAALEGLHCHNIGPKARKRDRRARKGGA
VANGTTYFALKMQSAITELEGMYDRKDESSKSAVARAVGIGHRAEDEIRE
LMRGDNDTNPDETAGEVLGAAFADSRLPNGTLAMLSHLKRARAYRRRAER
QQECIENELERCLGRLARVEAQYLSLIAETNGQESSLASCLARARPLIEA
GFVLIEKGSMAQARGNYDDAIKLLEVHVNRAAAGGAADSSEIKAARELLG
TALCNRSVACYRLGDAYSGKRDAERAVEDCPGPMAQEQLKRSQTAQQALK
AAAASSLQMSAFSSSP*
back to top

mRNA from alignment at P-littoralis_Contig6:1143870..1157481-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.285.2 ID=mRNA_P-littoralis_Contig6.285.2|Name=mRNA_P-littoralis_Contig6.285.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=13612bp|location=Sequence derived from alignment at P-littoralis_Contig6:1143870..1157481- (Pylaiella littoralis U1_48)
GAAGGTGAGGAGGACGAGGTAGAGGGTTCCGAAAGCGATGTGGATTCTGA AAGCAATGACGGTAACGACGACGATGATGACGAAGAGGAGGAAGGGAAAG AAGACGAAGAGGACGACGAGGACGACCCCCCTCCGCCGATGTGGGGCGAG TCCGGCTCCGAGGCGGAGGTGGAAGTGCCCAAGTCGAAAAGAACGACGAA AAAAGCCGCCGCAGGGAGTTCCAAAAACAGCAAGGCCGCTGCGAACGGGG GAGGGGGAGGAAAGGCTGGGAGTGCCAGCAGCACCAGCACCAGCACCAGC AGGCCGGCCGCGGCCGCAGGTCCGAGCAAGAAGGTGAAGCCTGCCGCGGC CGGAACAAGGAAGAAGAAGCCCTCGGTTTCGCCACTATGGACAGCGTTCC TGAAGTCGAGGGACGGGGTGGAACGGCTGGGCTTCACGCCCCTGAAGAAG TGGGAGTCGTTCGTGGAGGAAGACATTTCTGTCGCGTTTCTGAACTGGTA CAAGGACCAGGTGCGTGTTGTTGTTGTTGGTACTGCAGCTGTGGTGGTGG TGATATGTATGTGTGTCTCAAGAGTTATGAAGTATAAAAGTGGTGTACGT CTGTATCTGTATCCTGAAAGTCGTGTGCATTTGTGTGCGCGAGAGTTTTG CAGCTCCTCACCTCAGCCTCTAGCGTGAAAAAACGTTTTTTTTTTTCCAG ATCAATCTGCGAGCAATGTCTTGCGTGTCCCCCGAAAAAATGCGCCGCGC GATGCTTTTGTGTGCTTATGTATGTAAAACGAACAAGAAACACCCTCGAA TCGCCAAATGCTTTGATCGCTGCGGCGTCGATGTGTCTGTTTTTTTGCAC GTACCGCTTTTATTTTGACCTTCGCCGACATCAATCTCCGCGTCTGGCGC GCCGTTGTGAGAGGGCGAAGGAAAATACCGACTCAAGTCTTTTTCATTGA CGAGATCAACGAGCCCGGCCAAGAAGATATATTGTCCCTACCGGGGGCCC CGTGGTCATCCGTAACGCAGAGCCATTACATATCTAGGGTCCCCGCAGAT CAGCATTTAGCGCCCAGTATGCATCCCGTACCTCAAAGCAAACACTCACT CCCTTGTTCCCGAAATTTATAAAGTACCGTGCCTTGTGGGTGTTGTTGTG TGGATGTGTGTGTGGGTGCTGGTGTGTGTTTTTTCGGTCTCAACACCTCC AGGTTGTTGGTGGTACATGTGGTATGTAGCGATGCTGACGGTCTGTATGT TCAGGTGTGGATGTTGTATGTATGTATGTATGTTGTACATATGGTGTGTA CAAACATCGTGCTTCGTGTAAACAAACAAAAACACTTTTATTTTATTTTT CACTCGCCAAGATTGGTCGTGTGCCGTGCGTGCTCTTGTGGGCTTCGAAT CAGTCCGTCCCATCTTTCCTGTCCTGCTGTGTTTCTGTCCCCCCCTCCAG GTTTTGGGCACCAAGTCCGTGCCGCAGGCGCTCAGGATCGCCGGTCTTCC TGACGGTTTTCCGGAGTTTTGCCACTGGGTGGCGGCTGGACACCACAATG CTTGCGGTGAGCCTGTTGTCGGTGTTGTTGATGGTGCTGTTGTTGTTGTA GTAGTAGTTGTTGTTGTTGTTGTAGTTGTTATTGTTATTGTTGTTTTTAC TCTTGTTGCTGTTGTTGTTGCTCTTGTTCTTGCTCCTGCTCTTCTTCTTG TTCTTGTTTTTGTTCTTGTTGCTGCTGCTGCTTCGGCTGTCGCTATTGTT GCTGTCGCTAAAGTCGTCGCTGGTGCTGATGTTCGCTTGCGTTTGGCAGG GTTTCCAATCAGGAGTGAATGTGCGGCTCCCCCTTTTTTTTTTTCGTACC GTCCGAGAAGGCGCGCGTACAGCAGTGTAGCACACTCAACCATTAGAATG GAAGGAAGTGTGACTCTAAATTGGTTTTCGGTCCGTCTCGAACGAGCCGC ATTCTCAATGATGCGCACGCGAAAACATGCAACAATATGGGCACTTTTAC GTTGGGTAGCCCCCCCCCCCCGCCCCCTTTTCCCTCCGGGGCTCCCGACA CCCCCCCTGCAGTAATACCCATCAACTTTTCAATTTAGATTGCACCTTGA AGAAATAAAATGCTGATTGCATTTTACTTTTGGACGTGACACCCCTGTTG AGTTCGTGTCGATGAAATCCCCGTTGAAACACGGCACCCGCCGTGAGTTC GTTCCGATTACGATTTCCGTTGAACATCCGCCCACCACCACCCTATTCTT TTTTTGCCGACGAAACTGTAAGAGGGCACGCACTTGAAGGTCGGCTTCGA GCCGTTCGCCGTGGAACACGTGAAGAAGGTAGAAGCCGAGAGCAGGCCGG TCGGACGAACTTCGCCACCGCCGACAGCTGCTGTCGGTGTCAGCACTAGC GGTTCAGGGCGAGGGACGACGGCTCCTGTGTCCGAGGTGGGTGGGTTTGT CGCATATTCCGCTGCCGCTTTGGAAGGCCTTCACTGCCACAATATCGGTC CCGTGATTGGTGTGGTAACTCTTGTGACCGTCACCGTAGGTAATGATACT TTCGTATGATGTTTGTGCGAATGTTTTTCTCGCGTTGCTTTTATGTATGT GACGAGTCAGCGTCGGCCGAGAGGTGCTCTGTCGGGCAAGGTGAGGGTAA GGTGAGAGAGTGAGTCGAGTCAGGCCGTCGTGGGCCATTTTTCACCGACC CCGAGCCCGGTTATGTGGTCGCACTTTACTTCAGAGTTCCGTGCGTCCAG GTGGTGTAGATGAAGGGACGTTGTTTTGTTCGGCAGACCTCCTGATCTGT ATCCACGCCAACATCTAACCGCTACAGCAGTACAGAATGTACATGTGTGC GCGTTTGGGTGTGGGTGTGAGGTTGGTCAAGTGTTTCGTGCACTTTCCGC ATGCAATTTTCATTTTATTTTATTTTATTTTATTTTATTTTTTGTTTGCA CGTCGTCCCAGTCAATGCCGCTGCCTGGGGTTGCACATACCGGTACGTGT CAAGTAGTTCGAAGCACGATATTGTGTGTACACGTGTTGCGTCTACCAAC CGGTACGCTCCGGGCAAGATTCGATCGGCGTTTCCTCTCGGGCGTCCTTT TTGCGGAGAAAGGTCGTTGTGAAAGTTCAAGCGGACCTGCCTCCCCAGAC CAAGCTCTCTACGTGCGTCCATCGCCAGTGTGACTTGGTGACCTACCTCA CTCCTCCTTTTACACCCACGACAACGATACTCAATGATATAAGATGTGAC GTCCACATCTTCGAGGTCTGAGAACCTGCGCGTTGGGGTTGGTAGATTCT TTTTTGCTCCTTGTTTTTTATTTTTTGAATGAAAACACATCATACTTTAT CATATCGTATCGTATCGCACCGTATCGCGTCGCATCGCATCGCATCGCAT CGCATCGCATCGCATCGCATCGCATCGTATCGTATCGAATCGTATCGAAT CGAATCGTACGATCTGTGTTTTCGTTGCATCCCACTCCAACCCAGCCCAT CGGCTCCAGCAGCGGCAGTCTCGCAGACCAGAAGGCCCGCAAGAGAGATC GCCGTGCGCGAAAGGGTGGCGCCGTCGCCAATGGCACGACTTACTTCGCC CTTAAGATGCAAAGCGCCATCACCGAGCTTGAAGGTATGTATGATAGGAG TATCATATCATGAAGTTTTGGAATTACTGCTGTTTGATTCGATATTTAGT AACTTGTGGGAAGTTGGTGCTGTATGCTTCTACTGTACGATTACATAGAA TACAGCAGGGATTTAAATAAGTGGTTGATTACTGTTGGTAGTTTTTAGTC CCTATCATTTTGGTCAGGTTTGTTTCGGTTGGTTTTCATTTGTTTTGTTT CGAATTTGAAGATTTTTCGAATCCGGAAATGGCCCCGATGATTTGATTTT CGCCGGCGAGTTGAGCAATGACGTGGCGATCTGTATGCAACGTGTTCATT GGTTGGCAAGAACAGTCCCCGCCTTTCGCCCCCCTCCCCCCCCCCCCTCC CAACCAAAGTATACTCCTAGGCGGGGTTTTGTGTCACTCCCTCGTGCGTT TTGATGCGTGCAGATGTGTTCGAATGGTGCACATGGTAGCTCGTGCTTTG TCCGGTTGATTGACGTCGATTGAGTGAATGCGTGCGTGCTTGCATGCGAC TTGCCCTCGAAAAAAAAAAGAAACGCTCCCGCTTGCTGTGTCTAGTGTAA CATGATTTGGCCTTGAAGCAAAAGCCGCTCGCTCCTGCTGTGTCTTGTGA AGCATGACTTGGCCCTTGAAGCAAAAAAAAAACGCTCCTGCTGTGTCTTG TGTAGCATGACACGCCCTCGAAACAGAAACCGCTCCTGCTGTGTCTTGTG TAGCATGACTCGCCCTCGAAACAGAAACCGCTCCTGCGGTGTCATGTGTA GCACGACTCGCACTCGAAACGGAAACAGCTCCTGCTGTGTCTTGCGCATG CGTATCATTACATAGCATGAACAATACGATTCCTTCAAATAAGGTTTCGA CGCCGCTGGAGAGGACGAGAGCAGCAAGTCTGCCGTGGCGAGGGCGGTGG GGATCGGCCACCGGGCAGAAGACGAGGTGCGCGGCGGTAGTAGTAGGCGG GGGCAGCAAGCAGAGGAACGCTGCTGCGTTCACGAAGGCAACGGGCGATT GATACACGCGCGTGACTTGAGGCAGGCAGTAAGAGCAATAAGCAGGGGGG CGATTTGCGGTAGCAGGCGGTCGTAGGCAGGGGACTGGGAACACCGGCAG CGGACGGGGATCGAAGGCAGGGGACGAGTTGCGGTAGCAGGTGGTGGAGC AGTAGTAGACAGGGGACGAAGAACGTGGGCAGAGGGAGCAGAGAACGCTC TGGGTGTGATCAGTTCATCCGTGCTGCTGTGGACCGGTTTATACCTGGAT TTATGGTGCGGTAGTAGTCTGCATGTTAGATACAAGTGTACCTTTAACTT ACATCCCACGCGAATTTAGAATCTGCTACTGCTGTGCCAAAAGTGCTGTG TGAGCATGGGCGACCCACCCGGTGCATTTTGTTTTTAATTTGTGTATGAT GTGCACGGTGCATTTTCTCCCCTGGGTTTCCATTTCACAGATTCGCGAGC TGATGCGGGGAGATAACGATACCAACCCCGACGAGACAGCGGGAGAGGTG CTAGGGGCGGCTTTCGCGGACTCGAGGCTGCCGAACGGGACGCTGGCGAT GCTGTCGCACCTCAAGAGGGCCAGGGCGTACCGGCGCCGAGCCGAGAGGC AGCAAGAGTGTATCGAGAACGAGGTGCACTTGACATGCTCGTTTATGTTG TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGT GGTGGTGGTGGTGGTATTATTGTTGTTGTGGTTGTTGTTGTTGTTGGTGG TGGTGGTGGTGGTGGTGGCGTTGGTGTTGGGGGTGGTGGTGATGGGGTGG TGGTGGTGGGGTGGTGTTGTCTTTGCCGTCACTATTGCTGTTGCTGTTGG TGGTGCTGTTGTTGCTGTTGTTGCTGTTGTTGCTGCTGGTGCTGTTGCTG TTGGTGCTGTTGGTGCTGCTGCTGCTCTTGCCTGCACGTGAAAACCGTTC CGAGCTTCTACCAGGTGGCTAGAGACGGCTGATTTTTCCATCCGCGGTCA CAGCACATACAGCACAGCAGCACGTACTTTTGATAGATTGTTGCACTCGG TTGTGTCGTTTTCGGCACAGAGAAAATGTTCGCACTTGATTGTTTCTTTG AACGTTTGTCGTCCTCTCGGTTGTTTCATCTGCTTTACTTGACTTTCATC CCATCGCTCGGGTGTGGTTTGGATCTTTACAAATGTACTTCGTATGTATT TGGATGTTAGGACCGTTATTTCGTTGTCCGTCTCATCGTACGTGTGTTGT ACCTTGTGCCTCACGTGGTAAGTCTTCCCCACTGTACCATTTGGGTACCC GGTTCACCTGAGAATTGTCTCTGTCTGTCTGTCTCCGTTTCCCTCTCCTC TCCCTCTATATTTTTCTCCCTCCATCTCTGTCGGTCTGTCTCACCGTCTC CCTGTCTCTCCCTCCTACCACCACCACCACCACCACCACCACCTCTCTCT ATCTCTCTCCCTCTATCTCTCTCCCTCTATCTCTCTTCCTCTATCTCTCT TCCTCTATCTCTCTTCCTCTATCTCTCTCCATCTATCTCTCTCCCTCTAC CCACCATCGTTAGCTGGAGAGGTGCCTTGGTCGCCTGGCACGCGTGGAAG CGCAATACCTGTCACTGATAGCCGAGACGAACGGACAAGAGAGCAGCCTC GCGTCGTGTCTGGCCCGAGCTAGGCCGCTGATCGAGGCTGGCTTCGTGTT GATTGAGAAGGGCTCGATGGCGCAAGCAAGGGGCAACTACGACGATGCAA TCAAGGTGAATGAAGGCTCAAAGCTGGTGGTGGTGGTGGTGGTGGTGGTG GTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGT GGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGG TGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTG GTGGTGGTGGTTGTGGTTGTGGTTGTGGTTGTGGTTGTGGTTGTGGTTGT GGTTGTGGTTGTGGTTGTGGTTGTGGTTGTGGTTGTGGTTGTGGTTGTTT GGTGGTGCTAGTGCTGATGCTGACGGTTGTTTGACGTAGTTGTGGTGGTG GTGGTGGTGGTGGTGGGGATGGGGGTGGTGGGGGTGGCGGTGGCGGTGGC GTTGGCGGCGGCGGCGGTGCTGCTGTTGTTATTTTTGGTGGTGCTAGTGC TGATCCTGGCGGTTTATGTTCGACGTAGTTGGGTGATGGTGGCGGCGATG GCGGCAGCCCTGAATTGGTCCTACATCCGCTGGCTTCAAAAGAGCAGTCT GCGACACGGTAACGTGAAAGCCGTACCTCATATGAAGCAATAAAAACTGT CCAGAAAAAGGTTTCTCGGGGACGGAAACAACGCCTCCAAATGAAACCGT CGTGTCTGTCCGTCTCTCCCTCTCCCTCTGATCTCTCTCTCTCTCTCTCT CTCTCGTTCTCTCTCTCTCTCTCCCTATCCCTCTCTCCCAACGTTGGGTT ACCCGCTCACAGCTGCTGGAGGTGCACGTCAATCGGGCTGCAGCAGGAGG CGCGGCGGATAGCTCCGAGATCAAAGCGGCGAGGGAGCTTCTAGGGACGG CGCTGTGCAACCGGTCCGTGGCCTGCTACCGCCTTGGGGACGCCTACAGC GGCAAGGTGGCTTGATGATAGAACTACATGTATCAAACCATGAAGGTATC ATAGTAGAAAACAATCCTCGCCAGAGGCCAAGGTGATTGTATGATATGTA CATACGACGAATGTATCAAACTGCTGTTTGTACTGCAAACTTGAAAGGAC AAAAACGAACACAGCTATACGCTGGCGAGAAGTCTTTGAGGGAGGTCGAG CCGTGAAACGAGGTTCAACTTCCCACAGAATTGATCAAAATAAACACATA AACAACGTTATGTCGGCGACAAATTTTCGGTTTCGGAAGTAGTGAGTAGG TGAAGCCATGAAACAAAGTTTTGAGTCTCTACAGTCAAGGCAAAGACAAA GACAAAGAACAACGCTTTGTTGCCGAGGAATTTTCCCACGAGAAGAGCCA GCCGCCTTGGTTGTTTGTCCGCGGTGACGGTTACAGAGAATACAATACCT TCCTTTTCTAATACATCCTCAAGGTCGGTTGTAGAGACGGGGTTTCTCCG CCGGAGGATATTGCGCGACTATGTGTCACATGAACGTGTCAGCCTACGGC TTGCTTTGAGGAGTTTGATACTGTACGAGCTTTTTCGTTTCTTGTTTGGG ACGGGGGGGGGGGGGGGGGGGGGGGCGCTTTTGGGCCAATTTTGGAGAAT GCGAGGAACGGAGTGCCGTGCCAGAGATGCGTGTTTGATCTTGTCGCCCC GGTGGTCAAAACCTCTATGGTATGGTTATTTGCGGTGGTGGAGTTTGTTC GCAAAAATCTCACGTGTCCTCTCCGGAGTTGCCCCCAAAGACTCCGTTTG CTATTTAATCCCTCGGGGACCAGGCCATTACGTGCCTTTTTTCACGAATA GCCCTGCTTCCAAACTTGAACCATCACATGTTCTCCCGAGAACCAGAAAA AAATTAGCAGCTGAGACAAAAAAATTACACGCGAGCACCTTACAGACATA CAGCCAGGGCCCCTTACGAGGTCTCACACTAGGCTGGTAACCGTCCCTGG AGAGACTAGAAGGGTCACCCGATGATCGCGACCCCGCCTTTTTCTCTCAA ATAGTGCGGAATGACGACTGTTCAGCGCAGGCCTCCCTAGCCCACACCCC ACTAAATCCGGCATAATTCAGGAATAGCGCATTCTTGAGCGCATTTTTGA GCGCATTTTCTCCCTCTCTGTGGCCCCAACCCTTGATGTGTGTCCTTCCT TTTTTTTCATCGATTGCTGCTGTGGACCGGCGTATTATCTGAATTCTTAG TGGTGCATGGCCGGGCTTGTGGCCGGACCTATTTTTTTCCTTGCCTTTAT TGTAATCCAGTCCCCAGCAGCAGTCGTTGCAGAAAAAAAGGGTGACAACC CATGTTGGGAAAAAAGTGCAGCAGTCGTTCCAAAAAGGGGATTGTTTTTC TCGATCGATCGCTCCTGTATATGCAACCCCCCATTCCCGTCCGTGGATGT GTTTACCGTACCGTAGGGATGCGGAACATGGAACGGGGGTTACAAGCAAG GATTGAGCACAACCTCCCCGCCCCCTCACTCCCACCCACCCCACCCTGGT CTAATGTTCCCTAATGTTCGTCACGGATGTGGATGATGCGGTCGGTGCTC GTGTGGTGCGGTTTCTGTTTCTTTTTCCTGTTGTTGGAACAGAGAGACGC GGAGAGAGCGGTGGAAGACTGCCCAGGCCCCATGGCTCAGGAGCAGTTAA AGCGCAGCCAAACGGCGCAGCAGGTATGAGAGACGGCAGGAGAGAAAGGA CGAGAGAAATAGTTTTTCACACCGACCGCAAGCAATGGTTGCTGCACCAA GCGCAAGGGGGGCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGATGGCGTCAGCGTTCACGTGAAATATCCACCCA CACGATGGCGTTGCTAAGATGAACGTTTCGTGTCGTACGCGTGAAGGAGA GGGAGTGTGAATCGACCAATCCGACAAACGAAGCCCGTCCAGTGACTGGT ACCAGTATTTTTTGCATTTTGGTCAGCGAAGCTAATAGCGAAGCTCCCGG ACCGAACTGAACTGAACTGAACTGAACTGAACTGACCTGAACTGACGTGA CATGAACTGACATGGAATTCCTAAATATCACGTCATCATGCATGCGTGCG TTTATCATAAAATTGTGCGAAAGAAAAAAATCTACGGTTTGATTTCGATT CGCGTCCACACAAGGGCGATGCTGCTTTCCAGCGCGTTTTTACGCGATAC TCCAAACGTCTCGAGCACGATTGATGTATGTACCTGTTGAGTCGGTACTC TTGTTGTTCACTCGCACTTTTATGGCACATCAACTGGGGTCGTGGTGCTC GTCTTCTTCCTTAGCCGACGGCGTCAGCTTTTGCATGCGAGCGCCGTGAC ATCATGCATGGTGTTGTATCGTACCGTCTATTTGTCTGTTTATCGACCTC GTACCTCTCTGGTACTTGACAAGTATCCTCTTGCAGGATATCTGCTTGAT CGTCACGAAGCCCTTTGTATATACGGAGTACTTCGTATCATATATCTGTG ATACTTCGTATCTATCTTAAGATATTATCTATCTACCTGCGAGTATGTAT CCGCCATAGGCCATGATATGTTGGCTTGATGCAGCCGATGCGATTGTCCC AAACAACAGCTACACCCCCACCCCTTTCCGCGGGCCTCGGGCCGCAACAC GAAAAGCTGTCACACGTATTATACTTCGTACATAAATACATACTTCCTCT GTATCATAAATCTGTGCCGTTATGGGCGTGTAATTGTTTGCGCATCCATA CTGTTTCGATCATCCTATAGTTAGGTTCGTTCGAAAGATGAAGTCTCAAA GAAGCTGATGCAAAAAAAAAGCAAAAAAAAAAGCCAGTTGTTTATACTAA AATGAAGTCAAAATATGCCCATTTTGGCCCATTTAAAGAATTTTGATTCC GCCAGATGTCTTGGTTTTAGAGCATGAGTCCCAAGTATCTTCGTTTTAGT GTGGCAAACCCAAGTGTCTTGATTTTAGCGTCGCGTCACTATTATACTGA TTTTAGTAAGGAGGGACTCGACATGAATCTTTGAGGTAGGGGGGCTAGGT TCAGGGTTAGGGATAATTTTGGGGGGGATTGCATTGGTTTTTTTTTTTGC CCCCGCCCCCCACTCCCACTCCACCTCTGGAAAGAGTTAAATACGGCCAT TTTTGGCCCGACTACTTTTTTGTTAGCCGCTAGCCCATGCGCAGGGTAGT GCGCAAGAAAAATATATATATGTGTTTCAACCCAAAAAACTCCGAAGATT TCGAAAAAATTATCGCCGAAGACATCGGACACCGTTGAGGGGGCGTAAAA ACAAAACGGCACAGACTTATGATACAGAGGAAGTATCAGTCTTTGTGCCC TCCCTGTATCTTCTTTTTTATTTTATTTTTTGTCTTTCGTCTGTTGATCA TGTAGTTACTGGACCATCACCCTGGTTTGCGTTTGCCTTGGTCTGTCATG GCCCTGGGCCCTGGTTCGATGTACGAAGTACTTCGAAGTATATGGTTATG GTTGAGATTTGTCTTGGTTATTTTTTGTTTGTCGGACTGTTTCCAATTTT TGTTTTTCTTTCGAACCTGTTATTTTTTTTTCTGTATTTGTTTGGTATTC TGGCCACCACAGATGGTACCCCAACGGTACCATATCTGATTTGACTGTGG GTGATCATAGTCCATATATTTTATTTTTTTATGTTTCCTCCTAGCACGAT ATGTGCCTGGTTTGTGACCACGGGCTAGACTGCGGCGGTAGTGAGCTGAT GTGAGAATCAACATCTGGTGGCACTTTTGTTTTCTCCAATGTGCAGTTTT TTGTCGCTTTTTTTTCTGCGGATTGTGTGTTTCCCCCCCTTTCTCATCTC ACATGTATTTACACACGTTTTCCCCGTGTATCTCAAGCCCCCCCCCCCCC CCCCCTCTGACCCCGCTGTCGGAACACCGCCAGCTGATTTTTCCGAGCCT GCCGGGCCCATTTTTGCAGATGATTTTTCTGTTTTTCTCCCTGTTGTTGC TGATTTCGACATCGCATGCTTCACTCATTTTCCACGGATTGCTTTCTATG TCCCTGCCGCCCATTTTTTTTCTTCGAACCCGCACGCCTGCTTGCCGTTG GACGATTCCCCCCCTCCTTCCCTGTCGCAGGCACTCAAAGCCGCCGCCGC CTCATCGCTCCAAATGTCGGCCTTCTCTTCCTCCCCATGACGAAAGACCC GCAGCAGCACTCTTGACCATTCCTACGACGATGGGTTGAGTCGTTGAGTC GGTTTCTCGTGTTGCGCTGGGGGTGTGGGATGGAAGCCGGGGCATACAAC AGAGGGTTAGCGTTTGAGTTTTTGCGTGTGCGTGTGCGTGAGCGATGTGC GATGTGCGATGTGCGGGGCGGGGGGGGGAGTCGTTGTTCTAGAGTCAAAG TGGGGTTAGCTTTGATCGACTCAAGTTAGCTTTGATTAACTCAGGGGGAC TCGTTTTTCTATGATGGGCGTTTTGTGGGAAGGGGAGGGGGGGGGAAACC CAGCGTGGAAATCGAAAAGCATGGAACATTTTTTGTCTGTCTAGCGTTAG CGTTTTATGTTCCTTTGCTCTTGGAATGAATTGAGAGTGTAGACAATTTT TTGGACGCGTGTGTAGGATGGAATATATGGGAAGGATCACGACTAACGCC GTTTCAGTAGGCCTTTTTTGCGGGGATGGAAGGATGAAGACCCCCGTTTC AGGGTTTGGTGGCGGCTTATGACGCTGTGAAAACACCCAAGTTTTCCAGC ATTCTGTATTGCGGGGATGGATTTCAAAAAGGCTTGTTTTTCAGCAGAGG TTTTTTCGGGGATGGACGGATCAAAAGATCCCCGGGTTTGATGGAAATTT GCGGCGAAGAAGGGCAAGCGGCGGCAGAGGGAAATGAGAAGGGCACTCAG CAGTTGTAGCAGTCTTGTCAGCATCCCCCCCTTCCCGTGACGGCTAAAAC ATGAGATTTGGCGGAACTCTGACTGCTGAACGACCCCTTCTGTCACGTCC ACAGATGAAATCGTTGATAAAAAAGAGTGGGGTTGTAGTGTTGTGGAGGC CGGTTTCGTACGGATGGGCGGCGGGCGCGGCTTCGCGCGGAAAGACGCCG GTTTCGTCCGGAAAGGCGGTGGACCAGGTCGAGGCTAACGGAAGAGAAAA TTTGCTTTGCTTTGCCTTGCTTTGCTTTGCTTTGCTGTGATTCAATTTGA CTTGACTTGAATTGATTTGATTTGAACGTGTCTGTCCGTGGGCACGTACG TACGTCGATCGAATCCGATCGTCGAACCTCCTGGGAGAAACTTCTGCGGC ACGCAACAAGCAGTCTTCTGATTGGTCGAAAAAGCCTCGGGTCAAAAAAA CCTTCATCCAGCTTTTGCAGTAGTACAACAAGTTGTGTTGGGCGATCGGT CTGTGATTGTCTAGGGGGGGATGTTTGAGTGGGACAGGTTGGTTGGGTCG TCTGGTCGGTGTTGTTTTTTGAATGAAGAAAGGTTGTTCGTTTTGTTTTG AAAGAGACATTTTCACCAGCAGAGGAGGAACTCCCTCCCTCCCTCCCTCC CTCCCTCCCTCCCTTCCCCCCCGGCTGTGTTGAGTTGAGTTAGGTTGGGT TCGTCCTACTTGTATGATAGGACGGGTTTCTTTGTCGTACGATCCGGCTG GTATTTTTGTGTTTCTGGGAGTGGGAGGGGAACAAAAAAAACACAGAAGG CTGAATGTTGGATGGGTTTGGTGTTTGAATCGCATGTATGTCTTGTCTCA CTGCGTGCTGCCGTCGGGCGTAGAAAACAAAAAAAAAGTGGCACATATAG TCCAGTACACACGAGACTGCTGCATCTGACCGACCGCAGGCAGCAGGTAA GTTCGTCGAGTGTGAGAGCACGGAAAGCGAGCCCGCGCTCAGTCAGCCAG CATCGCAACAACACCATCATCTCAAAACAAGTGAGTTTTTTGCGGGTTGT GTCTCTTGTGTGTCGGAGGACAATCGCCGCCCGGTTCGACCCTTCTTTCA TTTGATTCGTGTGGAAAACATGTACGAATGTGCTAATGTATATTATGTGT GCATGGTCATCAAACATCATGATAGAGGAGGAACGAACGCCTCCACACAC AGCAGCACGAGTAGTACCTGATGCGGGGGGCTCGGCTCGGCTGGGGGGTT GTCGATGTTGTTGCTGGAGAATTACCAACAGAGAGGGAGAGTTTCCACTG TTAGTTTTATTTGGGGTCCCGCTCGACCTCCTTGTTTTTACAGCAGTAGT ACACATCATGCA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig6:1143870..1157481-

>mRNA_P-littoralis_Contig6.285.2 ID=mRNA_P-littoralis_Contig6.285.2|Name=mRNA_P-littoralis_Contig6.285.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1551bp|location=Sequence derived from alignment at P-littoralis_Contig6:1143870..1157481- (Pylaiella littoralis U1_48)
ATGTGGGGCGAGTCCGGCTCCGAGGCGGAGGTGGAAGTGCCCAAGTCGAA
AAGAACGACGAAAAAAGCCGCCGCAGGGAGTTCCAAAAACAGCAAGGCCG
CTGCGAACGGGGGAGGGGGAGGAAAGGCTGGGAGTGCCAGCAGCACCAGC
ACCAGCACCAGCAGGCCGGCCGCGGCCGCAGGTCCGAGCAAGAAGGTGAA
GCCTGCCGCGGCCGGAACAAGGAAGAAGAAGCCCTCGGTTTCGCCACTAT
GGACAGCGTTCCTGAAGTCGAGGGACGGGGTGGAACGGCTGGGCTTCACG
CCCCTGAAGAAGTGGGAGTCGTTCGTGGAGGAAGACATTTCTGTCGCGTT
TCTGAACTGGTACAAGGACCAGGTTTTGGGCACCAAGTCCGTGCCGCAGG
CGCTCAGGATCGCCGGTCTTCCTGACGGTTTTCCGGAGTTTTGCCACTGG
GTGGCGGCTGGACACCACAATGCTTGCGAGGGCACGCACTTGAAGGTCGG
CTTCGAGCCGTTCGCCGTGGAACACGTGAAGAAGGTAGAAGCCGAGAGCA
GGCCGGTCGGACGAACTTCGCCACCGCCGACAGCTGCTGTCGGTGTCAGC
ACTAGCGGTTCAGGGCGAGGGACGACGGCTCCTGTGTCCGAGGTGGGTGG
GTTTGTCGCATATTCCGCTGCCGCTTTGGAAGGCCTTCACTGCCACAATA
TCGGTCCCAAGGCCCGCAAGAGAGATCGCCGTGCGCGAAAGGGTGGCGCC
GTCGCCAATGGCACGACTTACTTCGCCCTTAAGATGCAAAGCGCCATCAC
CGAGCTTGAAGGTATGTATGATAGGAAGGACGAGAGCAGCAAGTCTGCCG
TGGCGAGGGCGGTGGGGATCGGCCACCGGGCAGAAGACGAGATTCGCGAG
CTGATGCGGGGAGATAACGATACCAACCCCGACGAGACAGCGGGAGAGGT
GCTAGGGGCGGCTTTCGCGGACTCGAGGCTGCCGAACGGGACGCTGGCGA
TGCTGTCGCACCTCAAGAGGGCCAGGGCGTACCGGCGCCGAGCCGAGAGG
CAGCAAGAGTGTATCGAGAACGAGCTGGAGAGGTGCCTTGGTCGCCTGGC
ACGCGTGGAAGCGCAATACCTGTCACTGATAGCCGAGACGAACGGACAAG
AGAGCAGCCTCGCGTCGTGTCTGGCCCGAGCTAGGCCGCTGATCGAGGCT
GGCTTCGTGTTGATTGAGAAGGGCTCGATGGCGCAAGCAAGGGGCAACTA
CGACGATGCAATCAAGCTGCTGGAGGTGCACGTCAATCGGGCTGCAGCAG
GAGGCGCGGCGGATAGCTCCGAGATCAAAGCGGCGAGGGAGCTTCTAGGG
ACGGCGCTGTGCAACCGGTCCGTGGCCTGCTACCGCCTTGGGGACGCCTA
CAGCGGCAAGAGAGACGCGGAGAGAGCGGTGGAAGACTGCCCAGGCCCCA
TGGCTCAGGAGCAGTTAAAGCGCAGCCAAACGGCGCAGCAGGCACTCAAA
GCCGCCGCCGCCTCATCGCTCCAAATGTCGGCCTTCTCTTCCTCCCCATG
A
back to top