mRNA_P-littoralis_Contig6.202.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.202.1
Unique NamemRNA_P-littoralis_Contig6.202.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: A0A6H5KBE8_9PHAE (Pyruvate dehydrogenase E1 component subunit alpha n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KBE8_9PHAE)

HSP 1 Score: 787 bits (2032), Expect = 7.460e-281
Identity = 393/416 (94.47%), Postives = 402/416 (96.63%), Query Frame = 2 
Query:   59 MFRTLTAVVAPVRRAVLQQQQRSGARIAA---RAMSTDKQITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDEELYSNIWVAGEKYETPVIPAYIRMPDRSKSIGNIMNDVVV 1297
            M RTLTA VAPVRRAVLQQQ R GA +AA   RAMST+KQITVPFTKDIDTHNL V LPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIE + NHQDSWITSYRCHCT+LARGGTVES+FAELFGFKEGVSRGKGGSMHMY+KEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAK+WCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAK GTQPPDEELYSNIWVAGEKYETPV PAYIRMPDRSKS+GNIM+DVVV
Sbjct:    1 MLRTLTAAVAPVRRAVLQQQ-RPGAGVAAAAARAMSTEKQITVPFTKDIDTHNLPVSLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIEAATNHQDSWITSYRCHCTALARGGTVESVFAELFGFKEGVSRGKGGSMHMYNKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKDWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKGGTQPPDEELYSNIWVAGEKYETPVTPAYIRMPDRSKSVGNIMSDVVV 415
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: A0A835Z5P4_9STRA (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5P4_9STRA)

HSP 1 Score: 607 bits (1564), Expect = 5.290e-210
Identity = 293/378 (77.51%), Postives = 329/378 (87.04%), Query Frame = 2 
Query:  146 RAMSTDKQITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDEELYSNIWVAGEKYETPVIPAYIRMPDRSKSIGNI 1279
            RAMS+   ITVPF+++ DTH L   +P EA TN+EEL+ YFKLMYTMRRMEITCDTEYKAR IRGFCHLYDGQEAVA G+E + + +DSWITSYRCHC SL RGGTVESIFAEL G+ EGVS GKGGSMHMYSK+H+F+GGQGIVGAQVPVG GL+FA+KY+ P GE TPVA+AMYGDGAANQGQIWE ANMASLWKLPMI+CIENNQYGMGTSKERSSSN+ YYTMGNHIPG ++DGMNVLM+REG   AKEWCS GNGPIY+E DTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIE+VKNLLV + LA+ QELK+IEKDIRKEVQ+ALK AK G+ P  EELY +I++ GE     V PAYIRMPDR+KSIG+I
Sbjct:   24 RAMSSGS-ITVPFSREYDTHKLPFEMPKEAVTNKEELLGYFKLMYTMRRMEITCDTEYKARAIRGFCHLYDGQEAVAMGVEAAFDQKDSWITSYRCHCISLLRGGTVESIFAELLGYSEGVSHGKGGSMHMYSKKHNFYGGQGIVGAQVPVGVGLSFAAKYATPPGEKTPVAIAMYGDGAANQGQIWEGANMASLWKLPMIFCIENNQYGMGTSKERSSSNNKYYTMGNHIPGVRMDGMNVLMVREGMKAAKEWCSTGNGPIYVESDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEYVKNLLVQHNLADPQELKNIEKDIRKEVQDALKAAKNGSIPKFEELYKDIYIGGEDNSKIVYPAYIRMPDRAKSIGSI 400
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: A0A4D9DDV1_9STRA (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDV1_9STRA)

HSP 1 Score: 536 bits (1380), Expect = 3.140e-182
Identity = 256/376 (68.09%), Postives = 306/376 (81.38%), Query Frame = 2 
Query:  149 AMSTDKQITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDEELYSNIWV---AGEKYETPVIPAYIRMPDRSKS 1267
            A S+D  ITV  +K  DTHNL    PT AT  +EEL+ Y +LMYTMRRMEITCDTEYK RTIRGFCHLYDGQEAVA G+ ++L+  DSWITSYRCHC +L+RG TVE I +ELFGFKEG  +GKGGSMH YSK H+F+GGQGIVGAQVPVGTGLAFA++Y  P GE+ PVA+AMYGDGAANQGQIWEAANMA+LWKLPMI+CIENNQYGMGTS ERSSSN+ Y+TMGN IPG ++DGMNV+ +REG  F K++   GNGP+++E++TYRYHGHSMSDPGTTYRNRDEI   R+ RDPIE+VK  L+++ L    ++K++EK IRKEVQ+ALKKAKAG+QPP EEL+ +I+     G +Y     P YIRMPDR+KS
Sbjct:   32 AFSSDSSITVDLSKAFDTHNLDSAPPTSATATKEELVEYLRLMYTMRRMEITCDTEYKTRTIRGFCHLYDGQEAVAVGVNSALDLNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKSHNFYGGQGIVGAQVPVGTGLAFANRYKTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTKYFTMGNRIPGIRMDGMNVVAVREGMKFVKDFVGSGNGPLFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLIEHSLLSPDDVKEMEKHIRKEVQDALKKAKAGSQPPLEELFKDIYCDDKGGNQY-----PPYIRMPDRTKS 402
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: W7TQD1_9STRA (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TQD1_9STRA)

HSP 1 Score: 537 bits (1384), Expect = 9.780e-174
Identity = 257/376 (68.35%), Postives = 306/376 (81.38%), Query Frame = 2 
Query:  149 AMSTDKQITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDEELYSNIWV---AGEKYETPVIPAYIRMPDRSKS 1267
            A S+D  ITV  +K  DTHNL    PT AT  +EEL+ Y +LMYTMRRMEITCDTEYK RTIRGFCHLYDGQEAVA G+ ++L+  DSWITSYRCHC +L+RG TVE I +ELFGFKEG  +GKGGSMH YSK H+F+GGQGIVGAQVPVGTGLAFA++Y  P GE+ PVA+AMYGDGAANQGQIWEAANMA+LWKLPMI+CIENNQYGMGTS ERSSSN+ Y+TMGN IPG ++DGMNV+ +REG  F KE+   GNGP+++E++TYRYHGHSMSDPGTTYRNRDEI   R+ RDPIE+VK  L+++ L    ++K++EK IRKEVQ+ALKKAKAG+QPP EEL+ +I+     G +Y     P YIRMPDR+KS
Sbjct:  671 AFSSDSSITVDLSKAFDTHNLDSAPPTSATATKEELVEYLRLMYTMRRMEITCDTEYKTRTIRGFCHLYDGQEAVAVGVNSALDLNDSWITSYRCHCVALSRGSTVEQIISELFGFKEGTVKGKGGSMHFYSKSHNFYGGQGIVGAQVPVGTGLAFANRYKTPPGENMPVAIAMYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSIERSSSNTKYFTMGNRIPGIRMDGMNVVAVREGMKFVKEFVGSGNGPLFVEMNTYRYHGHSMSDPGTTYRNRDEIVQTRSTRDPIEWVKKNLIEHSLLSPDDVKEMEKQIRKEVQDALKKAKAGSQPPLEELFKDIYCDDKGGNQY-----PPYIRMPDRTKS 1041
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: A0A7S3Q1P9_9STRA (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q1P9_9STRA)

HSP 1 Score: 498 bits (1283), Expect = 1.180e-167
Identity = 248/382 (64.92%), Postives = 294/382 (76.96%), Query Frame = 2 
Query:  134 RIAARAMSTDKQITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDEELYSNIW---VAGEKYETPVIPAYIRMPDRSKSI 1270
            +  ARAMS+D  +T   T   +THNL      E T ++EEL+ +F+LMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVATGI  + + +DSWITSYRCHC +LARGG V  I AELFG K G++ GKGGSMH YSK+++FFGGQGIVGAQVPVGTGLAFA+KY+A  GED  VA+A YGDGAANQGQIWEAANMASLWKLPMI+CIENN YGMGTS ER SS+S YY MGNHIPG ++DGMN+L ++EG  F KE C  GNGP+Y+E+ TYRYHGHSMSDPGTTYRNR+EIA  R+ RDP+EFVK  L++ G AEA E+K IEK IRKEVQ   KKAK        +++  ++   +AG K E      +IRMPD +KS+
Sbjct:   24 KFGARAMSSDS-VTFDLTGSFETHNLDTAPNNEITMSKEELLGHFQLMYTMRRMEITCDNEYKARNIRGFCHLYDGQEAVATGINAAFDKEDSWITSYRCHCIALARGGKVNEILAELFGNKGGMTDGKGGSMHFYSKKNNFFGGQGIVGAQVPVGTGLAFANKYNAKPGEDMNVAIACYGDGAANQGQIWEAANMASLWKLPMIFCIENNHYGMGTSMERHSSHSDYYKMGNHIPGVRIDGMNILAVKEGMRFVKEHCGSGNGPMYVEMMTYRYHGHSMSDPGTTYRNREEIAMTRSTRDPLEFVKKTLMEAGFAEADEIKSIEKRIRKEVQAETKKAKEYPDVELSDMFDYVYADEMAGRKQEK---QDFIRMPDYAKSV 401
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: F0Y4Q8_AURAN (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y4Q8_AURAN)

HSP 1 Score: 494 bits (1271), Expect = 4.790e-166
Identity = 251/390 (64.36%), Postives = 295/390 (75.64%), Query Frame = 2 
Query:  107 LQQQQRSGARIAARAMSTDKQITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDE--ELYSNIWVAGEKYETPVIPAYIRMPDRSKSI 1270
            +Q+     AR AA +  +   +T+ F     TH    P    A T++EEL+ YFK MYTMRRMEITCD EYKARTIRGFCHLYDGQEA+ TGI  +L+ +DSWITSYRCHC  LARGGTVE + AEL G   G + GKGGSMH Y+KE +F+GGQGIVGAQVPVGTGLAFA+KY  P GE  PVA+  YGDGAANQGQIWEAANMA+LWKLPMI+CIENNQYGMGTS  RSSSN+ YYTMGN IPG K+DGMNVL +REG    K++   GNGP+Y+E+ TYRYHGHSMSDPGTTYRNRDEIA+MR+ RDPIE VK +LVD+  A  +ELK +EK IRKEV +A  +AKAG  PPD   +L +NI++  +    P   AYIRMPD +KSI
Sbjct:    3 MQRALSRAARPAASSARSMSAVTIEFPGAYATHRCEAP-DAVAETSKEELLEYFKTMYTMRRMEITCDNEYKARTIRGFCHLYDGQEAIGTGINAALDLEDSWITSYRCHCIMLARGGTVEGVLAELMGNAHGETGGKGGSMHFYNKEQNFYGGQGIVGAQVPVGTGLAFANKYKTPLGEKMPVAIGCYGDGAANQGQIWEAANMAALWKLPMIFCIENNQYGMGTSISRSSSNNDYYTMGNLIPGIKMDGMNVLSVREGMKHVKDYVGSGNGPMYVEMSTYRYHGHSMSDPGTTYRNRDEIAAMRSTRDPIEHVKKMLVDHTDATEEELKAMEKVIRKEVADACDRAKAGA-PPDSIADLTNNIYLTEDGKSEP--QAYIRMPDYTKSI 388
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: A0A8J2SEA3_9STRA (Pyruvate dehydrogenase E1 component subunit alpha n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SEA3_9STRA)

HSP 1 Score: 494 bits (1271), Expect = 4.790e-166
Identity = 250/383 (65.27%), Postives = 292/383 (76.24%), Query Frame = 2 
Query:  125 SGARIAARAMSTDKQITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPD-EELYSNIWVAGEKYETPVIPAYIRMPDRSKSI 1270
            + AR A R +S +  ITV F      H    P  T A TN+ EL+ YFK MYTMRRMEITCD EYKARTIRGFCHLYDGQEA+ TG++ +L+ +DSWITSYRCHC +LARGGTVE + AEL G   G + GKGGSMH Y+KEH+FFGGQGIVGAQVPVGTGLAFA+KY  P GE  PVA+  YGDGAANQGQIWE+ NMA+LWKLPMI+CIENNQYGMGTS  RSS N+ YYTMGN IPG K+DGMNVL +REG    +++ S+GNGP+ +E+ TYRYHGHSMSDPGTTYRNRDEIA+MR  RDPIEFVKNLL+++  A   ELK IEKD+R EV  A  +AKAG+ P   +EL  NI++  E  + P    YIRMPD  KSI
Sbjct:   10 ASARPARRTLS-EASITVDFPGAYTAHLGDEPAAT-AETNKTELLEYFKTMYTMRRMEITCDNEYKARTIRGFCHLYDGQEAIGTGVQAALSPEDSWITSYRCHCIALARGGTVEGVLAELMGQSHGQTGGKGGSMHFYNKEHNFFGGQGIVGAQVPVGTGLAFANKYKTPLGEPMPVAIGCYGDGAANQGQIWESMNMAALWKLPMIFCIENNQYGMGTSISRSSCNNDYYTMGNVIPGLKMDGMNVLSVREGMKHVRDYVSQGNGPMVVEMSTYRYHGHSMSDPGTTYRNRDEIAAMRQTRDPIEFVKNLLLEHTDATEDELKAIEKDVRAEVAAACDRAKAGSPPSSIDELVGNIYLDAEGKDVP--QPYIRMPDYEKSI 388
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: A0A7S1Z3N8_TRICV (Hypothetical protein n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z3N8_TRICV)

HSP 1 Score: 491 bits (1263), Expect = 1.170e-164
Identity = 235/377 (62.33%), Postives = 292/377 (77.45%), Query Frame = 2 
Query:  140 AARAMSTDK-QITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDEELYSNIWVAGEKYETPVIPAYIRMPDRSKS 1267
            AAR MS+D    T   T   + HNL           ++ELM +F+LMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVATGI  +L  +D WITSYRCHC +LARGG+V ++ +ELFG  EG+S+ KGGSMH Y+K+H F+GG GIVGAQVPVG GL+FA+KY+A  GED  VA+A YGDGAANQGQIWEAANMASLWKLPMI+CIENN YGMGTS +R SS+S YY MGNHIPG ++DGMN+L ++ G +F +++CS GNGP+Y+E+ TYRYHGHSMSDPGTTYRNR+EIA  R+ RDP+EFVK  L+D G A+A E+K++EK IR+EVQE + +AK G +P  EEL+ +++    + +    P +IRMPD +KS
Sbjct:   23 AARFMSSDNPSATFDLTGSFEVHNLESEPENTIDMTKDELMKHFELMYTMRRMEITCDNEYKARNIRGFCHLYDGQEAVATGINAALAPEDDWITSYRCHCQALARGGSVGAVISELFGMVEGMSKAKGGSMHFYNKKHHFWGGAGIVGAQVPVGVGLSFANKYNAKPGEDMNVAIACYGDGAANQGQIWEAANMASLWKLPMIFCIENNHYGMGTSIDRHSSHSDYYKMGNHIPGIRIDGMNLLAVKRGMSFVRDFCSSGNGPMYVEMMTYRYHGHSMSDPGTTYRNREEIAFTRSTRDPLEFVKKTLMDAGFADADEIKEVEKRIRREVQEEVSEAKKGNRPGLEELFKHVYAKSMEKDDYEYPPHIRMPDHAKS 399
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: A0A7S0GGJ8_9STRA (Pyruvate dehydrogenase E1 component subunit alpha (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0GGJ8_9STRA)

HSP 1 Score: 486 bits (1251), Expect = 9.550e-164
Identity = 229/337 (67.95%), Postives = 272/337 (80.71%), Query Frame = 2 
Query:  245 REELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDEELYSNIWVAGEKYETPVIPAYIRMPD 1255
            + ELM++FKLMY MRRMEIT D EYKARTIRGFCHLYDGQEAVATGI++    +DSWITSYRCHC +LARGGT+E +  ELFGF  G+S+GKGGSMH Y+KEH+F+GG GIVGAQVP GTGLAFA+KY+ P GE  PVA+A YGDGAANQGQIWE+ANMASLWKLPMI+CIENN YGMGTS ER SS++ Y+ MGNHIPG ++DGMNVL ++EG  F KE+C+ GNGP+Y+E+ TYRYHGHSMSDPGTTYRNR+EIA  R+ RDPIEF+K  ++D G   A+ELK++EK IRKEVQ  +KKAK    PP EEL+S I+             +IRMPD
Sbjct:    7 QSELMAHFKLMYMMRRMEITFDNEYKARTIRGFCHLYDGQEAVATGIDSVFTQEDSWITSYRCHCVALARGGTIEQVAGELFGFVNGMSKGKGGSMHFYNKEHNFYGGDGIVGAQVPKGTGLAFANKYNTPPGEAMPVAIACYGDGAANQGQIWESANMASLWKLPMIFCIENNHYGMGTSIERHSSHNDYFKMGNHIPGVRIDGMNVLAVKEGMRFVKEFCANGNGPMYVEMMTYRYHGHSMSDPGTTYRNREEIALTRSTRDPIEFLKKTMIDAGFTNAEELKELEKKIRKEVQSQVKKAKESHVPPPEELFSYIYAKDTGKGNQEAVPFIRMPD 343
[Close]
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Match: K0S2Z1_THAOC (E1_dh domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S2Z1_THAOC)

HSP 1 Score: 488 bits (1257), Expect = 1.330e-163
Identity = 236/378 (62.43%), Postives = 289/378 (76.46%), Query Frame = 2 
Query:  137 IAARAMSTDKQITVPFTKDIDTHNLTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYDGQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGVSRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPVALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSNSTYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRYHGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIEKDIRKEVQEALKKAKAGTQPPDE-ELYSNIWVAGEKYETPVIPAYIRMPDRSKS 1267
            ++ R MS+  ++T   T   +THNL        T  ++EL+S+F+LMYTMRRMEITCD EYKAR IRGFCHLYDGQEAVATGI  + + +DSWITSYRCHCT+LARGGTVES+  ELFG   G ++GKGGSMH Y+K H+FFGGQGIVGAQVPVG GLAF + Y+A  GE   VA+A YGDGAANQGQIWEAANMASLWKLPM++CIENN YGMGTS ER SS+S YY MGNHIPG ++DGMNVL ++EG  F K++   GNGP+Y+E+ TYRYHGHSMSDPGTTYRNR+EIA  R+ RDP+EFVK  L+D G A+A+++K+ EK IRK+V   +K AKA  +P  E  L+  ++ +    E    P +IRMPD +KS
Sbjct:   32 LSVRQMSSSDEVTFDLTGSFETHNLETAPSDTITMTKDELLSHFELMYTMRRMEITCDNEYKARNIRGFCHLYDGQEAVATGINAAFDLEDSWITSYRCHCTALARGGTVESVLGELFGNAGGQTKGKGGSMHFYNKAHNFFGGQGIVGAQVPVGLGLAFTNHYNAKPGETMNVAIACYGDGAANQGQIWEAANMASLWKLPMVFCIENNHYGMGTSMERHSSHSDYYKMGNHIPGVRIDGMNVLAVKEGMRFVKDFVGSGNGPMYVEMMTYRYHGHSMSDPGTTYRNREEIALTRSTRDPLEFVKKTLIDAGFADAEQIKETEKRIRKDVASQVKAAKASPKPTVEPHLFEYVFTSDGGKEQNEFPPHIRMPDFAKS 409
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBE8_9PHAE7.460e-28194.47Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A835Z5P4_9STRA5.290e-21077.51Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A4D9DDV1_9STRA3.140e-18268.09Pyruvate dehydrogenase E1 component subunit alpha ... [more]
W7TQD1_9STRA9.780e-17468.35Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A7S3Q1P9_9STRA1.180e-16764.92Pyruvate dehydrogenase E1 component subunit alpha ... [more]
F0Y4Q8_AURAN4.790e-16664.36Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A8J2SEA3_9STRA4.790e-16665.27Pyruvate dehydrogenase E1 component subunit alpha ... [more]
A0A7S1Z3N8_TRICV1.170e-16462.33Hypothetical protein n=2 Tax=Trieres chinensis Tax... [more]
A0A7S0GGJ8_9STRA9.550e-16467.95Pyruvate dehydrogenase E1 component subunit alpha ... [more]
K0S2Z1_THAOC1.330e-16362.43E1_dh domain-containing protein n=1 Tax=Thalassios... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:824495..833655 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FIP4
Preferred namePDHA1
PFAMsE1_dh
Model size2346
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00027,RC00627,RC02742,RC02744,RC02882
KEGG koko:K00161,ko:K05694
KEGG ReactionR00014,R00209,R01699,R03270
KEGG Pathwayko00010,ko00020,ko00620,ko01100,ko01110,ko01120,ko01130,ko01200,ko04066,ko04520,ko04922,ko05230,map00010,map00020,map00620,map01100,map01110,map01120,map01130,map01200,map04066,map04520,map04922,map05230
KEGG ModuleM00307
Hectar predicted targeting categorymitochondrion
GOsGO:0003674,GO:0003824,GO:0004738,GO:0004739,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005967,GO:0006082,GO:0006084,GO:0006085,GO:0006086,GO:0006090,GO:0006091,GO:0006099,GO:0006101,GO:0006139,GO:0006163,GO:0006164,GO:0006637,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0007124,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009060,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009295,GO:0009628,GO:0009651,GO:0009987,GO:0010035,GO:0010038,GO:0015980,GO:0016049,GO:0016491,GO:0016620,GO:0016624,GO:0016903,GO:0016999,GO:0017144,GO:0018130,GO:0019362,GO:0019438,GO:0019637,GO:0019693,GO:0019752,GO:0030447,GO:0031974,GO:0031981,GO:0032787,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034603,GO:0034604,GO:0034641,GO:0034654,GO:0035383,GO:0035384,GO:0040007,GO:0042221,GO:0042645,GO:0043167,GO:0043169,GO:0043209,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044182,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045254,GO:0045333,GO:0046390,GO:0046483,GO:0046496,GO:0046686,GO:0046872,GO:0046914,GO:0050896,GO:0050897,GO:0051186,GO:0051188,GO:0055086,GO:0055114,GO:0061732,GO:0070013,GO:0070783,GO:0071616,GO:0071704,GO:0072350,GO:0072521,GO:0072522,GO:0072524,GO:0090407,GO:0098798,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902494,GO:1990204
Exons10
Evalue1.24e-248
EggNOG OGsCOG0462@1|root,KOG0225@2759|Eukaryota
Ec32 ortholog descriptionPyruvate dehydrogenase E1 component alpha subunit, mitochondrial precursor (PDHE1-A)
Ec32 orthologEc-27_000530.1
EC1.2.4.1,3.1.3.48
Descriptionpyruvate dehydrogenase (acetyl-transferring) activity
Cds size1242
COG categoryC
BiGG ReactioniMM904.YER178W,iND750.YER178W
BRITEbr01601,ko00000,ko00001,ko00002,ko01000,ko01009,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.202.1prot_P-littoralis_Contig6.202.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 824553..832609 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791239.940206-UTR-P-littoralis_Contig6:824494..8245521680791239.940206-UTR-P-littoralis_Contig6:824494..824552Pylaiella littoralis U1_48UTRP-littoralis_Contig6 824495..824552 +
1680791240.0849762-UTR-P-littoralis_Contig6:832609..8336551680791240.0849762-UTR-P-littoralis_Contig6:832609..833655Pylaiella littoralis U1_48UTRP-littoralis_Contig6 832610..833655 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791239.9566739-CDS-P-littoralis_Contig6:824552..8245931680791239.9566739-CDS-P-littoralis_Contig6:824552..824593Pylaiella littoralis U1_48CDSP-littoralis_Contig6 824553..824593 +
1680791239.9711487-CDS-P-littoralis_Contig6:825239..8253491680791239.9711487-CDS-P-littoralis_Contig6:825239..825349Pylaiella littoralis U1_48CDSP-littoralis_Contig6 825240..825349 +
1680791239.9808261-CDS-P-littoralis_Contig6:827166..8272791680791239.9808261-CDS-P-littoralis_Contig6:827166..827279Pylaiella littoralis U1_48CDSP-littoralis_Contig6 827167..827279 +
1680791239.9927642-CDS-P-littoralis_Contig6:828669..8287531680791239.9927642-CDS-P-littoralis_Contig6:828669..828753Pylaiella littoralis U1_48CDSP-littoralis_Contig6 828670..828753 +
1680791240.0038953-CDS-P-littoralis_Contig6:829273..8294391680791240.0038953-CDS-P-littoralis_Contig6:829273..829439Pylaiella littoralis U1_48CDSP-littoralis_Contig6 829274..829439 +
1680791240.0137234-CDS-P-littoralis_Contig6:829761..8299251680791240.0137234-CDS-P-littoralis_Contig6:829761..829925Pylaiella littoralis U1_48CDSP-littoralis_Contig6 829762..829925 +
1680791240.025428-CDS-P-littoralis_Contig6:830482..8306291680791240.025428-CDS-P-littoralis_Contig6:830482..830629Pylaiella littoralis U1_48CDSP-littoralis_Contig6 830483..830629 +
1680791240.0435433-CDS-P-littoralis_Contig6:831349..8314201680791240.0435433-CDS-P-littoralis_Contig6:831349..831420Pylaiella littoralis U1_48CDSP-littoralis_Contig6 831350..831420 +
1680791240.0580614-CDS-P-littoralis_Contig6:831789..8319671680791240.0580614-CDS-P-littoralis_Contig6:831789..831967Pylaiella littoralis U1_48CDSP-littoralis_Contig6 831790..831967 +
1680791240.0749862-CDS-P-littoralis_Contig6:832441..8326091680791240.0749862-CDS-P-littoralis_Contig6:832441..832609Pylaiella littoralis U1_48CDSP-littoralis_Contig6 832442..832609 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.202.1

>prot_P-littoralis_Contig6.202.1 ID=prot_P-littoralis_Contig6.202.1|Name=mRNA_P-littoralis_Contig6.202.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=414bp
MFRTLTAVVAPVRRAVLQQQQRSGARIAARAMSTDKQITVPFTKDIDTHN
LTVPLPTEATTNREELMSYFKLMYTMRRMEITCDTEYKARTIRGFCHLYD
GQEAVATGIETSLNHQDSWITSYRCHCTSLARGGTVESIFAELFGFKEGV
SRGKGGSMHMYSKEHSFFGGQGIVGAQVPVGTGLAFASKYSAPAGEDTPV
ALAMYGDGAANQGQIWEAANMASLWKLPMIYCIENNQYGMGTSKERSSSN
STYYTMGNHIPGFKLDGMNVLMIREGFAFAKEWCSKGNGPIYIEVDTYRY
HGHSMSDPGTTYRNRDEIASMRTARDPIEFVKNLLVDNGLAEAQELKDIE
KDIRKEVQEALKKAKAGTQPPDEELYSNIWVAGEKYETPVIPAYIRMPDR
SKSIGNIMNDVVV*
back to top

mRNA from alignment at P-littoralis_Contig6:824495..833655+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.202.1 ID=mRNA_P-littoralis_Contig6.202.1|Name=mRNA_P-littoralis_Contig6.202.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=9161bp|location=Sequence derived from alignment at P-littoralis_Contig6:824495..833655+ (Pylaiella littoralis U1_48)
CAGCACTTCCCTCGCTTTTACACCATCTTCTCCGGGGTGCAAGCAACCAG
CAGCAGCCATGTTTCGAACACTTACGGCCGTAGTGGCGCCTGTGCGGAGG
TGAGTCGAGGATGCCCAATTGTCCGAAGCGAAGCCGCTGTCTGCTGTGCA
AAAAATATTTACGAGGAACCAACTGCCGCTGCCGTGTGGAGAACATGTCT
GGAAGTGCGGTGTTGGTTCCTCAACCTGCTTTGGTAGGTCCGCTTGCCAC
CGATACACGCACACACTCACATCCATAAATGGGTGCTGGCTTGTCTTAGT
TGTTGCAATCATGTCTAGATTCGATAGCGAGCGGTACGTGCACACCTCTC
TTAGTCGCAACAATGGCCTCTGGGAATCTTACAGCCAGAGTTGTCACTGC
TCTTGTAAATGGGAAAAGGGTGACCCGCCTACTGCTGTGCCGCAATTTGT
TCGGGCTGTCTCCTCTGCACTGCTGTCTGTCCGTAGACAGCAGTCATGAC
ACCTGCTTTGTACGTAGCTCGTTCAATTTTTCCCTTCAAAAAAGAAACAG
CACGCACGAAAGGTCGCACGGATGCTTGTCTCTACCGCTGCTGTCCTTCG
CTGTTTGAATCGCGGTGTGTGTTTTTAGATCCTCCAACAACGAATTACTG
CTGTACAACAGCAGTCGTCCATTTATCGTGTTCGGTTTCTACTCGTTTTT
TGGCTCTCCACTTCTCTCTCGTCCTCTGTCCGTCTTCCGGGGCAGGGCTG
TGCTGCAGCAGCAGCAGCGATCAGGCGCACGAATAGCAGCGAGGGCAATG
TCGACCGACAAGCAGATTACGGTGCCCTTCACCAAGGACATCGACACGCA
CAACCGTGAGTTTGAACGAGCAGCAGTAAAATTTGTACCGGTGCGACATG
TATGTCACATCATGTGCTCTTGACAGAAATGACTGACTGCCGAAGTGCTG
CACCTATGATACCTGTAACGGACGTTGGAAGTCGCCGCGCTGACTTGACT
TGCGTGGATGATATCGTATGATACGTATGAATAAACAGCGCAACAGCTGC
TGCTTCGTAACTACTGGCAAACTTGCCGCGTAAAGCAGCGACACGTACTC
TCACACTACTGTAGCTAACTTTGATCGGCACACCACAAGAGGCGTGATCG
ACGGGCCGCAGGGCATCCCAAAGAAACCGATGCTGTTGGACTCACACATA
CTAGAGGTCGCCCCGAAAGTCTAGCCCGATTTCACAAGCCAGGCATCGAA
CGACGTGCTTCCAAGTCTCATGCTTGTGTATGCTCGACAATTTGTTTTTG
CAATGGCACAGATTTAACTTGGCGTTGGCATATCAGAGGCCTCTAGTCTA
CTTGGCGTCTACTCGGCGTCTACTCGGCGTCTACTACTTGTACTTATTCT
TCTGAGCAGCACCAAATTACGCCGCATATTCCTGCATTCAGCGGCCGGTC
ACACACGCACACGGACACCAGTGTATGCCGCACATCAAAAAGAAGGCTCG
AATCTCATGCAGTGCCAGAGGGACAGAGCCAGTCAACGTGCCATTCCCTT
GTTTCGTATCGATGGGAAGAAAATAGTCTCTACCCGTCGGTGTCGGACAA
AACCATAATCGCCAACTCCAGGCAACTACAAAAATGTACAGAGGAGAAAT
ACTCCATCGCTGCGACGAGTGCACAGCAGCATGCTGCAGTGATTCCAGGC
TAAACACACGCCGTTCGTTACGTTGTTTTGTTTTTTATACCAAGTGCGAG
CAATAAGGCCCTGTATTAACGACAATCAGGAAAAAATCAAAACTGGAAAG
AATCAAAATCAAAAATGGTCTCTGATTATTGGTCGAGGCTCTCAAGACCT
ACCGACGACAATTTTGATTTCTTGGACATCACCGGCAGACCGAAGAAGTC
CAAAAAGTTGCCGGAAACTCAAAATCAAAATTGGGGGTCTTAACCCGATC
GAAGGCTTTTTGAACGATGTGTCTCGCGCACCACACCATAGACAAGCAAA
CAGAGGCACAGGGCACGCCGACGCAACCCACACAACACACAGAGAGAGAG
AGGTGTGCCGTCGCATCAGGCATGTCAAAACCAGCACCACACCTAGAGCA
GAAGAAAGACAGATAGACTCGCATGATGAGGCACCAGACAACACCTAGAG
CAGGACAACGACAGCCAAACAACAACAAACAGCAGACAGCCAGACGCGTA
CAGCAGTCTCGAGTCCATGATGAGCCAACACACACAAACAACGCGGTGTC
TCTCAGCGACGTAGCATCAGCGTGCAGTGCTGCTCTGAAACATGTATCTG
TACTGCTGCTGCTGTTGTTGTTATGTTTACAGCAGTGCCGATCGATGGTG
ACATCATAATCAATCAGAGGTTTTGGATCTCGGCGGCGTTTACAGGCCTC
TACCAAGCTGGTCCGTTAATATGGCTCGCAGTGTTTTTCGTAAAATCAAA
CTTTGATTTTGCTATTTTGATTTTTCAATTTTGATTTCCTGATTGTCGTT
AACACAGGGCCTAACGTACACGTTGGGTAAGACTCGCTGGACAGAATACA
TGCTACACGTTACAGCAACAGCAGTAAAAATAAGAGACACATTTCCCTTT
CTATTTTTTGCGTTGCTCTCGTTTTTCTGTTTTTTTGGCTGTGCCGCCGC
AACTTGGTCTCTTTCGATCCAGTGACCGTGCCGCTACCGACGGAGGCCAC
CACGAACCGCGAGGAGCTCATGTCCTACTTCAAGCTCATGTACACTATGC
GCCGCATGGAGATCACGTGCGACACCGAATACAAGGTGGGCAAGGAAGTG
TGGCCAGCTTTGATCAGGAGTGTGGCCATCTTTGACTGAATACGAAAAAG
CTTTGGAAGCCCTCTTCAAGAAGGGTGGATCACGCCCCGCCGAATGCAGT
CGCGACTGACTTAACTCCTGGGGCATACCGCAGATTCTTGAGAAAATAAA
TAAACTGAACATCAAAAGAGTGAACGCAAACGCGGCCGAGACAGGACCAA
TTCGGGGGAACATGTCCTTCATTGCTCACAGGACAAGTTCCGTGCTACTA
TTGATGTTGTTGCTACTATAGTTATTTTTACTTTTATTATTATTATTATT
ATTATTATTACTATCATTGTTATTATTGCTGTAATCATTACTCCGAGTAT
TATTAATGTTTCGTTTTGGGGGTTCATGCCTCACCTATACTACACCACAC
ACCACCGGTTTGGTCATATTTGTGTATACTCTCACATACTCGAAAACTAA
AATATATACTCTCGTGAGGAAGGAATCATATGATGTGTACCACATGTCGT
AGTGATGCTTTGAGTAAATCATGTGCTCACATCCCAAGGTGAGATCCACC
GCAACATAGCACCGCTGAAATTCACCCTTCCCTCAGGAGGGTACTTTCAC
TGCTGTTGTGTGCCCCGCGTACTGCACCGTAGTCGCGACGGCACATGGCA
CTTGCTTTGACGAAGGGGGTAGTGGCGTTTTCGGCCGATCCTTTCATCCT
GTTTGGCCGCCGTTCTGCCAGCACTGCAGTATGAAATCAAATCATTCTGT
GTGCGAGCGAACTTTCACGCTATCGAGGTTTCAGATACACCAGATGAGGC
GTTTGTACTCGATCCGGTAGTCGTCGTCCCGCATACATAACTATTTGCAC
ACGTACTGATTACCCTACTCTGTTGTGAGTGAAATATTCCTGGGTGTGAT
GGGTAAGAACTAACGACTCCCACGCCTGTCTCGTGCGAATTTGTCTCGGG
TTGGTCGAGTGAGAACTGGCCTGATCCGACCGACCAAGATCTGTCACGAA
CTCAAACATGTGTTCTGAGCGAACTACTGTACGCGTCGAAGAATATTGAG
ATCCATGTTCCTTCACACGTGGCACAGCAGTATCCAATAACATACTGTAC
CGGTATGATGTGCCAACCATATCATGATCCCCATCGTGTCTCAATTGACT
ACTCATCTTTGCAGTTTGTCGTTATGTGAGAGCGCCTGGTGTCTTTCAAG
AGGCGTTTTTATGCCGACTTTGCAATGATTGGCTCTCATCGCGTGTTTCA
AAGAGTGAATTCCCCTTAGAAATGTTCTGCGAGTGGTGGTGGTGGCCGGG
ATGTGATCTATCCGATGCGTTGATGCGGGTTGGTGGATGATGAGATCATG
ATGTTTTGTCCTGGTTGCTCCTCAGGCGCGGACCATCCGCGGGTTCTGCC
ACCTGTACGACGGCCAGGAAGCGGTAGCGACAGGCATTGAGACATCCTTG
AACCACCAGGTGCGTCTATAACACACAAGGTCGAGGTGGACGCAAGAAAT
TGATTGATCGCGCGAATGGCGGTTCGGCGGTTGTTGCCGTTTGTCATCCA
GCCGACTAGGAGATGATGAACGCGCTATCATATATATCATGGGATTATTC
AGAGCAAACCCATACCCCCCCCTAGTCCCCCACCCCCCTGTGGGCGTGCG
TGCGCCCTCTCACACTTCTTGGATCCTTTGCTCTGTCCGTAATTTCTTCT
CTGCTTGCGTCGCCTCTGCATGTGTGCGTCTTGGACACACAACCCCCTCC
CACTTCGTCTGCCGGGGGCAATGACGAACACTGGGCGGGGCCGAACTGCT
GCTGCCTTACGGTGGCGGGGGTATACTTTCGCTCTGCTTGCTTGCTTGCC
TGCTTGCCTGCTCACTTGCTTGCTGCGTCCACGACATGATTGGTGGTCGG
TGTGGTGGGCAATGGGCGTCGTTTTTATCTGTGAAAACGGATGTTATGTA
CGCGTACACACACTTACCACGCAAAACAGGACTCTTGGATTACCTCGTAC
CGATGCCACTGCACGTCCTTGGCCCGCGGGGGCACCGTCGAATCGATCTT
CGCCGAGCTGTTTGGGTTCAAGGAGGGCGTCTCCCGCGGGAAGGGCGGAT
CCATGCACATGTACAGCAAAGAGCACAGCTTCTTCGGGGGGCAGGGTGAG
AGAGAGAGTGTCGCGAGATGATTGCAGCAGGCGAGCGAGAAAAAACAGAG
CTCTGCTTCCGTTTCGTTTTTCTCCCGTCGCCGTGGTGTTGCTTTTTCCT
TTTCCCCGAGTCCGTTGAGCTGTACCCTGAGATACTCAGCATCGTCTCCT
TAGATCCTACTCATAGATACAAGAGTCCCGAGGTGAAAAATAAAGTATCC
AGAGATTAAAATTGAAACAATAGCGAAACGGTCCATGTTTTTTTTACCCC
GGCGCCTTGCGCATTATTCTTTTTCCTCTTTACATCCCGTGAACTGAACT
CCTTTTCCAAATGAAAGGTATCGTTGGGGCACAAGTGCCGGTGGGCACTG
GTTTGGCTTTCGCAAGCAAGTACTCTGCTCCGGCCGGGGAAGATACGCCG
GTGGCCCTGGCCATGTACGGGGATGGTGCTGCCAACCAGGGGCAGATCTG
GGAGGCGGCCAATATGGCTTCATTGTGGAAGGTATGATGATGGTGACGGT
GGTGGTGGTAGTGGTAGTTTTGAAAACACCAAAATGTCTACCGGTGGCTG
GGGTAGATGGTACCGCATCGACGTTGTGCTGACAACGGTTTTAATAGCAT
GATGGCTATGGTGATGAAAGTACCAGCAGGCGCGCAGCGGTGGGCGGGCA
AGGGTGCACTGCTGTACTGCGCGCGTTGATGAAGGAAAGCTTAAGAGGCG
GTGGCCTTCCGGTGAGAGGAAGATGTGAACACGTCACTCGAGATCTGTTG
AAACGAATTTGGTGGTACTTCCGTAGCAGCAGCGCTCGTCCACGGCCCCA
GCTCATTGTGAAGAAAACGATGGCGGGAGAAAATTTGAAGAATGGCGTGT
GCGGGGGGGCATGCACACGTCCAACAGAGCGAAGTACGATACAAAAAGGG
GCGTGTACTCACTCCCAAGAGCGTGCACGGTTGTTATTTAAGGGTTATTT
ACCACTTCGTGTCACGTGCATTTTAATCTGTCTTCACCTCTACCAACCCG
CATCCCTTTCCTCCCTCCTTCCCGTCGTCTGTCTTCAGCTGCCGATGATC
TACTGCATCGAGAACAACCAGTACGGTATGGGGACGTCGAAGGAGCGATC
GTCGTCAAACTCGACTTACTACACCATGGGCAACCACATCCCCGGGTTCA
AGCTTGACGGCATGAACGTGCTCATGATCAGAGAGGTGCGTGCGCAGTGG
TGACAGGAAGGAGGAGGATAGAGAGGAGGACAGAAGGAAAGAGTAAACAT
GGGACATTTGCGTGCTTGCTTGCCTGCGTGCTTCCTTCCTTCCTGCCTGC
CTGGCGTCTACCAAATCGAATACGTGACGAAAAAAGAAACAGAAGCAAGG
ACTCGAATCAGCAAACACTTGTTCGTGAGAGAAATGGCGGAAGATGAAAT
AATGCACACGCGCGCACGTACGGCCAGGCGCGTGGAGATGGGCAGAAATT
GCACTACTTCGTTTTTTCGCTCACGTTGCACATATGATATCTTCACCTTG
CACGAGGGGTCATGCGCGAATTTTTCATCCCAATGGTTCCAAGTGTTTCA
GGATTTTTGCAGTTGCTGGGCGTGAAATGAAGAATCCCCTTTGGCGAGCA
TAAAGTGCCGTTGTGCTTACCGGATACGTGCATTCCCTGGTGAAGCTTGT
TTGATGCCTCTGCATAATCTCGGAGCATCCCAATTTTTTTTTATGTATAT
TGATTGATCTGAAAAATGGGCTGCAACAAGAAAAATCCGTGTGGTTCGCT
CAACGAATCTTCTTGCGCTCAACGAACGCCCGAAAACGGAAGACACAGCG
TTACTATTTTTTCGCATTGCATTGAACGCTGTGTCTTCCGTTTTTATTCA
TGGTGACCCCATCCCAACCCCCTCCCCCCCCTCCTCTGGTATCGTTTGTC
GACAGGGGTTCGCGTTTGCGAAGGAGTGGTGCTCCAAGGGCAACGGACCC
ATCTACATCGAGGTCGACACGTACCGGTATGAAGGGTATTTCTATGGAAA
TTTCGTTTCTTTTTGCTCACATACAAGACGTTTCGGATCGGAAACCAATC
CGAAAAGTGAAGTACTCCTATATTTCGATGTGCCTCATCGATGGCATGTC
ATGCACACGGCACTGTGCGATGCGGCTGGTGGAAATTGGTTAATGTATCG
TAGCGCTAGTACACGCCTAAACCGCTCATCGCACCCCCTTTTCTTGGCTG
AACTGATGTATGGTGGTTGTGGTCCGATGTCTGATACAAAAGCCAACAGT
ATAGTGCACATCGCTTGTCGGACCCCCTCTACTCTCGTCGAACCTTGTTG
CGACTGCGTGCGTTCGGCGTGGGTCGGCGGTCGTTGCGCAATCAGATACC
ACGGGCACTCAATGTCCGACCCGGGCACGACGTACCGCAACCGCGACGAG
ATCGCGTCCATGCGCACGGCCCGCGACCCCATCGAGTTCGTCAAGAACTT
GCTCGTGGACAACGGTCTCGCGGAGGCGCAGGAGCTCAAGGACATCGAGA
AGGACATCAGGAAGGAGGTCCAGGTGGGGCGGTCGTTTTTTTTGGGGGGG
GGTCACACGCGTACACGGCACGCTGCGCACTCACAAACACCTCCAACCGC
CGCATTTTATTTTCATTTTTCTGACCCCGGAGAGTACCGTCGTCGTTCCC
CCCCACACACACTCACATGCACACATCCATCGAGTGCACGCGGAGAACGC
ATCACGCGTGTAAGGACGCGCTTCCATATCGGAGTACGATACGAGGTTCG
CACATGAAGGCACGCAGTGAGGGAGATTCTTCCAACGGAAGTGGTGGTTG
TCAAGCCTAGAATAAACAAATTCTTGGTTTCCGCCGCTTCAACGATGCCC
CAGTCCCAGTTCCAAAACATGCGCGAAACCGTCTGCGTGAAGTCGTCAAA
TATCGTTTCCGCTTCGGTCACCTCACTCTGCGGTTTTTTTTCGGTCGTCT
GTTGGTCATTTCGTCGATTTCTCGTTGTGCTGTCGTTGCTGTTGTAGGAA
GCGCTGAAGAAGGCGAAAGCGGGAACGCAGCCCCCGGACGAGGAGCTGTA
CAGCAACATCTGGGTAGCGGGAGAGAAGTACGAGACGCCCGTCATCCCGG
CTTACATCCGCATGCCCGACCGCTCCAAGAGCATTGGAAACATCATGAAC
GACGTCGTGGTGTAATTTATCGCACTTCCCCCCCTCCTGAACCACTGTCT
TGTTGTGGTCGTGTCGTACTTTTTTTGTGTGGTGACGTTTGGTGTAAGTA
CCTCCGCGGGAACCTCACCACCAACACAAGGGCACTTCGAGCCTACTGCT
TTGTAGCTGTCGCCGAAGTTTTTCAGGGAGTGACACGGCCAAATGTGTGC
GGGAAATTTGTTTCATGTCAGCCGCGTTTTTTTCTGCGCATGTTTTCCGA
GGAAAAGTATCATTAACCGGGACGAAAACTTTGGGTCAAGCGCTCTTGCT
CGAAAATTTGGTGATTTTTTTTTTGTGGGTTCCGATGCTACTCGTCTCTT
TCGGTAGCCTCAAGGAGGGATCTTGCTTGTGTACTACTGCTTAGGACTTT
GGATTCTGCAGTGACAACGTCGGACATTCCTCGTGGTCGGGGGGTTTCTC
TGGGCTACGACACAAGGCATGTTCGTGGTTTGCAGAGCGAGCATCCTACT
TCGAAGAATACGAAGTATGGGTATTTTTTGAAACGGACGAGAGGCTATTA
TTGTTTTTCCTGCTGAATTTTCATTCTCGGACTCTTGTTGAATCTTTGAG
TTGGGCCGAGGCACGACAAATCCGTGTGATGATATGATATGTCGGAAGTG
TTTTGCAAGGACATACACAAAACAGTGCGATCTGTCACACGTAGGCATCG
ACGTCAATATTGCAGTGCACGATCACTGTGTTGACGTTGCTCATATTCTC
GGCTGGTGCGGATCCCGGCTGATGCGCATAAGTACGCAAAAGTACAGATG
GGCGTCCAGGATATAGACGGAGCGACAGCATATGCACTCATATACATACA
CCGTGGTCCATATTTGTTGTTCAAATTTTGGGCCCAAGTTTGCGGTTTCA
TGCTCGAAACGCTCACTTGCTGTCGGGTCCAACACGCCCTACGCGGCAAA
AACAATCACCCGATCATAAATCCAAGTATAAGCAAAAACAAAAAAAACTG
ATGGCATTTTATTTTATCCAAAGTGTGATTTTTCTAACGCGGACACTCTT
TTTTCGGAAGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig6:824495..833655+

>mRNA_P-littoralis_Contig6.202.1 ID=mRNA_P-littoralis_Contig6.202.1|Name=mRNA_P-littoralis_Contig6.202.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1242bp|location=Sequence derived from alignment at P-littoralis_Contig6:824495..833655+ (Pylaiella littoralis U1_48)
ATGTTTCGAACACTTACGGCCGTAGTGGCGCCTGTGCGGAGGGCTGTGCT
GCAGCAGCAGCAGCGATCAGGCGCACGAATAGCAGCGAGGGCAATGTCGA
CCGACAAGCAGATTACGGTGCCCTTCACCAAGGACATCGACACGCACAAC
CTGACCGTGCCGCTACCGACGGAGGCCACCACGAACCGCGAGGAGCTCAT
GTCCTACTTCAAGCTCATGTACACTATGCGCCGCATGGAGATCACGTGCG
ACACCGAATACAAGGCGCGGACCATCCGCGGGTTCTGCCACCTGTACGAC
GGCCAGGAAGCGGTAGCGACAGGCATTGAGACATCCTTGAACCACCAGGA
CTCTTGGATTACCTCGTACCGATGCCACTGCACGTCCTTGGCCCGCGGGG
GCACCGTCGAATCGATCTTCGCCGAGCTGTTTGGGTTCAAGGAGGGCGTC
TCCCGCGGGAAGGGCGGATCCATGCACATGTACAGCAAAGAGCACAGCTT
CTTCGGGGGGCAGGGTATCGTTGGGGCACAAGTGCCGGTGGGCACTGGTT
TGGCTTTCGCAAGCAAGTACTCTGCTCCGGCCGGGGAAGATACGCCGGTG
GCCCTGGCCATGTACGGGGATGGTGCTGCCAACCAGGGGCAGATCTGGGA
GGCGGCCAATATGGCTTCATTGTGGAAGCTGCCGATGATCTACTGCATCG
AGAACAACCAGTACGGTATGGGGACGTCGAAGGAGCGATCGTCGTCAAAC
TCGACTTACTACACCATGGGCAACCACATCCCCGGGTTCAAGCTTGACGG
CATGAACGTGCTCATGATCAGAGAGGGGTTCGCGTTTGCGAAGGAGTGGT
GCTCCAAGGGCAACGGACCCATCTACATCGAGGTCGACACGTACCGATAC
CACGGGCACTCAATGTCCGACCCGGGCACGACGTACCGCAACCGCGACGA
GATCGCGTCCATGCGCACGGCCCGCGACCCCATCGAGTTCGTCAAGAACT
TGCTCGTGGACAACGGTCTCGCGGAGGCGCAGGAGCTCAAGGACATCGAG
AAGGACATCAGGAAGGAGGTCCAGGAAGCGCTGAAGAAGGCGAAAGCGGG
AACGCAGCCCCCGGACGAGGAGCTGTACAGCAACATCTGGGTAGCGGGAG
AGAAGTACGAGACGCCCGTCATCCCGGCTTACATCCGCATGCCCGACCGC
TCCAAGAGCATTGGAAACATCATGAACGACGTCGTGGTGTAA
back to top