mRNA_P-littoralis_Contig6.137.12 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig6.137.12 vs. uniprot
Match: D8LL17_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LL17_ECTSI) HSP 1 Score: 1078 bits (2788), Expect = 0.000e+0 Identity = 677/1146 (59.08%), Postives = 781/1146 (68.15%), Query Frame = 2
Query: 266 ELFRHDVPVLRTSLVRHGLVDPSTSPEARRASLPPCS-EDLTATDRGEEQWITAAAVGRGAGFQALVGVDNVVVGHVRAAEELRSTLLSVTSSKEPPKDRSPAATTARRGERSPIGEERLRKRHSRLETSPNSPPSAPSSGRHWAGPAASMAAASAMAAARRVDRPFYVGTSGQTSRRSGGSPEETPQPG-GVSMANLLDIAVTLFGPGGG-----GRHSAGGDSGGATRGPGGSAGTPSSRVNKNKSKDDKLVTFTVDVHAGNSMTLGVTVKELGGGAVFVQDVRKLPGGFSGPAELAGVLIGDVILGINYQPLEKGLVHTSALLAEAIALSGFVKLQISRAVRPNTWRQPLPGKDCAIVTELMWRTAQLRKFGVLSSAERHTIAGLILQRMAWEEGTLVRPPRAPAHLSLLTSRLTASSSFESSASSLLDSMVLQVKGLREAISVRCLCAKSTVETVEVSSVWDPPTVEEAASGATTTATPEATTSASTLVTVRYILRVEDVATGREWLVFPQYSDFSELHQELLMLWPPIADLPFPAKRPVPRAMAPGSRAASGPGGEGAVVEERGGRLEAFLDGAIALLGIYASIDSRCSEALRLVQVFLRRPTDLARAELALSPALCDQKRAELLVYKLLNQVDSPAARMKHLLMGDFENEASLAPNVESLMKGTSSRLRRLQNYVLEQHEDQLSSSAHDTSEAKEVIMRKAVRRQVELSLYLPLRRCLWKELTRRLQSPARKLSRAIKVLRDSSPVVFGVETPGILASKEWGPVKESMGQATRRVLPTDQIDGLRRAAEHITALHASLQQSA--RGGSGRCDADERSAPRSKPNNGAVGVADDDAERVDWKLFGRRGEEXXXXXXXG--GVVFVEDATAARDGCLSPENGDMRSRGRDSCGRLKVSGESSACPATSDEGETYLDGDGSNGGDGEATDSVASSSSASKCMPAPPFAQGGPEENNGTSTEHMAEPKTTEATPLVDERPWGAARVHNGGVVTTEIPAMREAPLRGKLKGRRSWYASSASHETRPTLEIGPTLSWESISSVDD--SPGAKSQGRKRRGGQGSAGDGQVATIGRIDSEEAMGADDFLPLFSLVLVHSAPLDLLFPQTLLTYLMDLDGSLSEAGYLVATLEAAVAFITQVRSGNVS 3664
ELF HDVPVLRTSLVRHGLVD STSP AR+A P S +DL A DRGEEQW AAA G +GFQALVGV++VVVGHVRAAEELR++L S S ++ K R+P T RRGE+ EERLRKR L T S +A SS R AG AAS+AA AMAA RR DRP+YVG +G SR GSPE+TPQP GVSMANLLDIAV+LFG G G GRHS GD + SS V K+K K++KLVTFTVDVH G SMTLGVTVKELGGGAVFV+DVRKLPGG SGPAELAG+L+GDVILGINY+PLEKGLVHTS LAEAIAL+GFVKLQISR VR +WRQ LP KDCA+V+ELMWRTAQLRK G SAERH+IAGL+LQRMAWEEGT + A LL + SS ES+AS+LLDS+VL+ KGLR+AI VRCL ++ VETVEV SVW P T E AS A PEA T AST TVR+++RVEDV TGR+WLVFP Y D S L QELL +WPPIADLPFPAKR A A + E VVEER RLEAFLDGA++LLG+Y SID RCS AL +VQ FL RP DL A+LALSPAL DQKRAELL+Y+LLNQ DSPAARMKHLLM DFE++ SLAP+V+SLMK SSRLRRLQ++VL+ HE+QLSS A+ TSE +E I+RKAVRRQVELSLYLPLRRCLWKELT R++ PARKL RAI+ LR S P VFG+ET G+LASKEWGPVKE MGQATR VLPTDQIDGLRRAAEH+TALHASLQ +A G DA + S ++GA+ V D+ R KL+ R + G G V E ATA G L PE G+ R RDS G L++ G +T D G G AT+ VAS S PA A EE + + E D+ W A V + + T E+ REA LR RSW A S SH+ PT T SW+SI +++ +PG S++AMGADDFLPLF+LVLVHSAPLDLL PQT+LT+LMDLDGSLSEAGYLVATLEAAV+FITQV + ++S
Sbjct: 7 ELFPHDVPVLRTSLVRHGLVDLSTSPRARKAPAGPASSQDLAAGDRGEEQWTKAAAAGGNSGFQALVGVNSVVVGHVRAAEELRASLRSPPSPRDLQKIRAPGTPT-RRGEQPKSAEERLRKRSVSLRTDSPSAQAAASSRRQRAGSAASIAATLAMAAVRRGDRPYYVGAAGGASR---GSPEQTPQPTEGVSMANLLDIAVSLFGSGDGAGGRGGRHSIDGD-----------GSSKSSGVVKSKKKEEKLVTFTVDVHTGGSMTLGVTVKELGGGAVFVEDVRKLPGGSSGPAELAGILVGDVILGINYEPLEKGLVHTSTRLAEAIALAGFVKLQISRCVRSKSWRQSLPRKDCALVSELMWRTAQLRKAG---SAERHSIAGLVLQRMAWEEGT------SRALAPLLATTPPVDSSLESAASALLDSLVLEAKGLRKAIDVRCLHTRTIVETVEVPSVWGP-TSSEVASSDAKAAPPEAATPASTRATVRFVVRVEDVGTGRQWLVFPHYGDLSALRQELLAMWPPIADLPFPAKRSSVSRAAAAETAET----EETVVEERVVRLEAFLDGALSLLGMYVSIDPRCSGALHIVQDFLGRPEDLFNADLALSPALRDQKRAELLLYRLLNQADSPAARMKHLLMRDFESDTSLAPDVDSLMKCASSRLRRLQDFVLDHHEEQLSSCAYTTSETREAIVRKAVRRQVELSLYLPLRRCLWKELTWRIRDPARKLERAIQALRRSPPAVFGLETLGVLASKEWGPVKEVMGQATRNVLPTDQIDGLRRAAEHLTALHASLQLNACCDNGDASTDATDSSCNGRSGSSGALSV---DSRRASLKLYSREDGKGEAGEEDGEEGSVRAEGATAPTHGTLCPEEGEFGIRERDSNG-LRLGGRPDR--------QTRAVSDSFTGDGGRATNDVASDSDGPSSAPALSLAD---EEQRLNVVQELVE----------DDLCWQAQCVQDEDIATEEVD--REA-LRPNFNSSRSWSALSTSHDISPTAAKSSTSSWDSIGGLNEGAAPGXXXXXXXXXXXXXXX-XXXXXXXXXXXSDQAMGADDFLPLFALVLVHSAPLDLLLPQTMLTHLMDLDGSLSEAGYLVATLEAAVSFITQVHASSLS 1094
BLAST of mRNA_P-littoralis_Contig6.137.12 vs. uniprot
Match: A0A7S3H9E4_9STRA (Hypothetical protein (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H9E4_9STRA) HSP 1 Score: 134 bits (338), Expect = 3.210e-28 Identity = 151/568 (26.58%), Postives = 245/568 (43.13%), Query Frame = 2
Query: 1010 FTVDVHAGNSMTLGVTVKELGGGAVFVQDVRKLPGGFSGPAELAGVLIGDVILGINYQPLEKGLVHTSALLAEAIALSGFVKLQISRA---VRPNTWR------QPLPGKDCAIVTELMWRTAQLRKFGVLSSAERHTIAGLILQRMAWEEGTLVRPPRAPAHLSLLTSRLTASSSFESSASSLLDSMVLQVKGLREAISVRCLCAKSTVETVEVSSVWDPPTVEEAASGATTTATPEATTSASTLVTVRYILRVEDVATGREWLVFPQYSDFSELHQELLMLWPPIADLPFPAKRPVPRAMAPGSRAASGPGGEGAVVEERGGRLEAFLDGAIALLGIYASIDSRCSEALRLVQVFLRRPTDLARAELALSPALCDQKRAELLVYKLLNQVDSPAAR--MKHLLMGDFEN--EASLAPNVESLMKGTSSRLRRLQNYVLEQHEDQ----LSSSAHDTSEAK-EVIMRKAVRRQVELSLYLPLRRCLWKELTRRLQSPARKLSRAIKVLRDSSPVVFGVETPGILASKEWGPVKESMGQATRRVLPTDQIDGLRRAAEHITALHASLQ 2659
++V V G + TLG+ VK+L + V +++ G E AG+ +GDVI G+N+ P +G + L +K + R + WR +PG E++ + L + V S ER ++L M + +R S L ++ + L+ ++Q KGLR A+ VR + KS +TV Y+LRVEDV +G +W+V +YSDF L++ELL + ++ FP KR R A +VE R LE ++ + +L +YA++DS S ALR +Q FL L + PAL DQ+ EL+ Y+ LN S A + ++ + D + E A ++ L ++ +V + H Q L + D +E + +RK +RRQVE +LYLPLRR +++ + L ++ L RAI +L+ + P F +E P + + ++ + + LP DQ L +AA + LH Q
Sbjct: 128 YSVVVDLGKTGTLGIGVKDLADNVLAVSMLKR-ENCCPGAGEDAGIRLGDVIYGVNFIPTREG----------SKTLISIIKKETGRGKTHIHIQGWRCHQLCSDAIPGYHFPRADEILVQAYSLVQSKVFSDWERWNFIEILLGHML--DDLKLRASGDDGDTSGLLEPSQGAARAKQMQVLDLERNIMQAKGLRTALCVRIVHTKSHGDTVV------------------------------------YVLRVEDVQSGLQWVVQRRYSDFFALNEELLDMTHFTKEVEFPRKRLSIRNTAK-------------LVENRIVALEQYMRRMLHILTLYATMDSSASRALRHLQTFLGVDNYL---DCVHPPALDDQRFIELMAYQFLNDFGSEACQQCVRFITSVDLDGMVEIGTADGYVPVLNHARDALAEVEQFVQQLHMAQMIQTLQTRREDLNEDQLRSFVRKCIRRQVEAALYLPLRRTVFRIVFTFLAEKSKLLQRAITMLQGAPPKFFMLE-PFVTRATSLPRTVKAFRRVIQAYLPADQGQLLIQAATAVMELHKECQ 629 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.137.12 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig6.137.12 >prot_P-littoralis_Contig6.137.12 ID=prot_P-littoralis_Contig6.137.12|Name=mRNA_P-littoralis_Contig6.137.12|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1152bp MSKKMELFRHDVPVLRTSLVRHGLVDPSTSPEARRASLPPCSEDLTATDRback to top mRNA from alignment at P-littoralis_Contig6:521015..530936- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig6.137.12 ID=mRNA_P-littoralis_Contig6.137.12|Name=mRNA_P-littoralis_Contig6.137.12|organism=Pylaiella littoralis U1_48|type=mRNA|length=9922bp|location=Sequence derived from alignment at P-littoralis_Contig6:521015..530936- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig6:521015..530936- >mRNA_P-littoralis_Contig6.137.12 ID=mRNA_P-littoralis_Contig6.137.12|Name=mRNA_P-littoralis_Contig6.137.12|organism=Pylaiella littoralis U1_48|type=CDS|length=3456bp|location=Sequence derived from alignment at P-littoralis_Contig6:521015..530936- (Pylaiella littoralis U1_48)back to top |