mRNA_P-littoralis_Contig6.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig6.10.1
Unique NamemRNA_P-littoralis_Contig6.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: D7G8B1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8B1_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 6.150e-48
Identity = 82/98 (83.67%), Postives = 88/98 (89.80%), Query Frame = 1
Query:    1 SPSLGKSIRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYTTTPFGPRPPSNINHCEAFALVPCEGGVPPGESVTVKAVFS 294
            SPSLGKSIRV +RGEGV+PVL M PADGRLDMGHVLEGDT ERE+KL NDSVFPLRY T PFGPRP SN+NH EAF+LVPCEGGVPPGESVTV A+FS
Sbjct: 1490 SPSLGKSIRVCVRGEGVKPVLRMTPADGRLDMGHVLEGDTIEREVKLLNDSVFPLRYATAPFGPRPSSNVNHLEAFSLVPCEGGVPPGESVTVTAIFS 1587          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: A0A024UTE2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UTE2_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 2.790e-15
Identity = 39/92 (42.39%), Postives = 52/92 (56.52%), Query Frame = 1
Query:   19 SIRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYTTTPFGPRPPSNINHCEAFALVPCEGGVPPGESVTVKAVFS 294
            ++RV L GEGV PVLS+ PADG++D   VL  +    E  L N S+FPL+Y           N N    F  +P E  +PPGE+  V+A+FS
Sbjct: 1104 NLRVSLHGEGVSPVLSITPADGKVDFKPVLAREKGYTEFSLLNSSLFPLKYIIKSLDNGSHPNFNQTSVFTCIPNEASIPPGETQVVRAIFS 1195          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: A0A6G0XXY8_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XXY8_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 6.280e-14
Identity = 40/92 (43.48%), Postives = 49/92 (53.26%), Query Frame = 1
Query:   19 SIRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYTTTPFGPRPPSNINHCEAFALVPCEGGVPPGESVTVKAVFS 294
            S+ VRL GEGV PVL +VP DGR+D   VL  +    +  L N S FPL Y   P      SN NH   F+ VP    +PPG +   +A FS
Sbjct: 1068 SLSVRLHGEGVSPVLGIVPPDGRIDFKPVLAREKGFTDFTLLNTSQFPLTYVLKPLEEHAHSNFNHTLVFSCVPNAATIPPGGTQIARATFS 1159          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: W4GLF0_9STRA (Uncharacterized protein n=9 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GLF0_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 8.580e-14
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1
Query:   22 IRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYTTTPF--GPRPPSNINHCEAFALVPCEGGVPPGESVTVKAVFS 294
            +RV L GEGV PVLS+ PADG++    VL  +    E  L N S+FPL+YT      G   P N N    F+ +P E  +PPGE+  V+A FS
Sbjct: 1111 MRVSLHGEGVSPVLSITPADGKIHFKPVLAREKGYTEFSLLNSSLFPLKYTIKSLDNGTTHP-NFNQTSVFSCIPNEASIPPGETQVVRATFS 1202          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: A0A485KUG8_9STRA (Aste57867_12034 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KUG8_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 2.190e-13
Identity = 39/90 (43.33%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   28 VRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYTTTPFGPRPPS-NINHCEAFALVPCEGGVPPGESVTVKAVFS 294
            V L GEGV PVLS+ PADG++D   VL  +    E  L N S FPL+Y   P        N N    F  +P E  +PPGE+  V+AVF+
Sbjct: 1144 VTLAGEGVSPVLSITPADGKIDFKPVLAREKGTTEFSLLNSSQFPLKYIIKPLDVADAHPNFNQTNVFTCIPNEASIPPGETQVVRAVFN 1233          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: A0A6A3UMM1_9STRA (Uncharacterized protein n=5 Tax=Phytophthora TaxID=4783 RepID=A0A6A3UMM1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 7.220e-10
Identity = 41/108 (37.96%), Postives = 52/108 (48.15%), Query Frame = 1
Query:    7 SLGKSIRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYTTTPF-----GPRPP--------SNINHCEAFALVPCEGGVPPGESVTVKAVF 291
            +LG +IRVRLRGEG+ P L++ PADG LD   VL    + REL L N S FPL ++  P      G   P        +       F   P    +P   SV V+ VF
Sbjct: 1251 ALGVNIRVRLRGEGINPSLTLTPADGSLDFQDVLARTRSVRELVLANGSAFPLAFSIVPLDDMKAGTMAPGAKEEDSMTTSTGLPVFTFSPTNAIIPENGSVMVQVVF 1358          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: G4ZVK7_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZVK7_PHYSP)

HSP 1 Score: 60.8 bits (146), Expect = 1.190e-8
Identity = 36/98 (36.73%), Postives = 49/98 (50.00%), Query Frame = 1
Query:    7 SLGKSIRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYTTTPFGPRPPSNINHCEA---FALVPCEGGVPPGESVTVKAVF 291
            +LG +IRVRLRGEG+ P L++ PADG LD   VL    + R+L L N S FPL ++          ++        F   P    +P   S+TV   F
Sbjct: 1044 ALGVNIRVRLRGEGINPSLTLTPADGSLDFQDVLARTRSVRDLVLANGSAFPLAFSIEALVKEDGDSMTTSTGLPVFTFSPTSAIIPENGSITVHVGF 1141          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: A0A225WWT8_9STRA (Flagellar associated protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WWT8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 5.640e-8
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1
Query:    7 SLGKSIRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYT 174
            ++G +IRVRLRGEG+ P LS+ P DG+LD   VL      REL L N S FPL ++
Sbjct: 1003 AVGVNIRVRLRGEGINPSLSISPVDGKLDFQDVLARTRNVRELVLANGSTFPLAFS 1058          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: A0A329RY00_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RY00_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 5.020e-7
Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1
Query:    7 SLGKSIRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYT 174
            +LG +IRV+LRG G+ P LS+ P DG LD   VL      REL L N S FPL ++
Sbjct: 1220 ALGVNIRVKLRGVGINPSLSLTPEDGNLDFQDVLARTRNVRELVLTNGSAFPLAFS 1275          
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Match: A0A3L6VDD3_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6VDD3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 1.240e-6
Identity = 26/51 (50.98%), Postives = 33/51 (64.71%), Query Frame = 1
Query:   22 IRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQNDSVFPLRYT 174
            +RV L GEGV PVLS+ PADG++    VL  +    E  L N S+FPL+YT
Sbjct:  482 MRVSLHGEGVSPVLSITPADGKIHFKPVLAREKGYTEFSLLNSSLFPLKYT 532          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig6.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7G8B1_ECTSI6.150e-4883.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A024UTE2_9STRA2.790e-1542.39Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0XXY8_9STRA6.280e-1443.48Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
W4GLF0_9STRA8.580e-1444.09Uncharacterized protein n=9 Tax=Aphanomyces astaci... [more]
A0A485KUG8_9STRA2.190e-1343.33Aste57867_12034 protein n=1 Tax=Aphanomyces stella... [more]
A0A6A3UMM1_9STRA7.220e-1037.96Uncharacterized protein n=5 Tax=Phytophthora TaxID... [more]
G4ZVK7_PHYSP1.190e-836.73Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A225WWT8_9STRA5.640e-851.79Flagellar associated protein n=1 Tax=Phytophthora ... [more]
A0A329RY00_9STRA5.020e-750.00Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A3L6VDD3_9STRA1.240e-650.98Uncharacterized protein (Fragment) n=2 Tax=Aphanom... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig6contigP-littoralis_Contig6:47992..49628 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G8B1
Preferred nameKIAA1751
PFAMsASH,PapD-like
Model size299
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0032838,GO:0035082,GO:0040011,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0048870,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0070925,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038
Exons3
Evalue1.01e-48
EggNOG OGs2CMB2@1|root,2QPUP@2759|Eukaryota
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-19_003810.1
Descriptionaxoneme assembly
Cds size297
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791232.5122256-CDS-P-littoralis_Contig6:47992..480671680791232.5122256-CDS-P-littoralis_Contig6:47992..48067Pylaiella littoralis U1_48CDSP-littoralis_Contig6 47993..48067 -
1680791232.5258257-CDS-P-littoralis_Contig6:48786..488801680791232.5258257-CDS-P-littoralis_Contig6:48786..48880Pylaiella littoralis U1_48CDSP-littoralis_Contig6 48787..48880 -
1680791232.542965-CDS-P-littoralis_Contig6:49500..496281680791232.542965-CDS-P-littoralis_Contig6:49500..49628Pylaiella littoralis U1_48CDSP-littoralis_Contig6 49501..49628 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig6.10.1prot_P-littoralis_Contig6.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig6 47993..49628 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig6.10.1

>prot_P-littoralis_Contig6.10.1 ID=prot_P-littoralis_Contig6.10.1|Name=mRNA_P-littoralis_Contig6.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=99bp
SPSLGKSIRVRLRGEGVRPVLSMVPADGRLDMGHVLEGDTAERELKLQND
SVFPLRYTTTPFGPRPPSNINHCEAFALVPCEGGVPPGESVTVKAVFSS
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mRNA from alignment at P-littoralis_Contig6:47992..49628-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig6.10.1 ID=mRNA_P-littoralis_Contig6.10.1|Name=mRNA_P-littoralis_Contig6.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1637bp|location=Sequence derived from alignment at P-littoralis_Contig6:47992..49628- (Pylaiella littoralis U1_48)
AGCCCTTCGCTCGGAAAGAGCATCCGCGTCCGCCTGCGGGGTGAAGGGGT GAGGCCGGTCCTCAGCATGGTCCCCGCGGATGGCCGTCTGGACATGGGGC ACGTTCTGGAGGGCGACACGGCGGAGCGGTGAGAAGTTGGGGGAGCAGGC GCACTGTTGGGGTATGTGAGAATTGTAGTTCACCGCGGAGAACGGTTGTG CCCTCGTGCAGTACGCACGGCCTTCTTGCCGTCATCTGCTCCTGAGCGCA TTTCCGACTTGGAGTCACACAGAACGCTTCCTCCCTTTCCGCCCGCCGCC CCCCACGTTTTGGCGCGTACTCATCGGTTCATACTTGATCGGTGTGGTAT ATATGGTCAGCGAACCCGATACGGATCTCAAACCCGCGTTCGGGGACCGC ACGAACTGCTGTGGCACAGACGTATTTTAGTGGAAGTAGACCCGCGTTTG CGGACCACACTGCTGGGGCAGAAAGTCATTTTCGAAGTAAAATTGAGCTT GAAGCTATGGGGGAACCCCGAGGGGTAGGCCGAGCATTGCTTGCGGTTGG TGCCAGTCTAGCGGGGAGAGGCGCACAAAAGGCTCTGACCAACCAGGTCC AGCGGCAAAGCTTCAGCAAAGGCACCAGTGTTGTAACCTGTAAGGCACGA CCGCCTCTGTTGCTTGCTTCGCGACACCGTCCGATGCAGACCTTCCCGTC CCCCATCCCCCGTCCCCCGTCCGCCGTCCATTGGCGCCTCCCCTGCAGGG AATTGAAGCTCCAAAACGATAGCGTGTTTCCACTCCGCTACACCACTACA CCATTCGGTCCACGGCCACCCTCCAACATCAACCATTGCGAGGTCTGTAT ATGACAAGCGGGTCGGGCGTTGTATCAACCGCATTGTAGCGCTAGCAGGC AAAAACCGAATGAGCGAGGGAATCTCGCGCCTCTGTTTCGAACCCGGCTA CACATTGGCAGTCGATGCACTGACTACTTCCAAGACAACGAGGAATTAGT CACTTGGAATATGAGTATGACACGTTGAAACATCTTCAATTAAAGCGTCG ACTGAAGGACAAATTAGATGTCCTGTAGGACGGAGATTCGGCAGAAAAAA ACTTCACATTTTTGGAATAAATAATGTTTTTTTCGTAGGAGAAATACCGG CGTGGTGGGTATACATCTTTCGAAAATGCACAACAGCACATGGTAGGACC AACTCCCTCCAGCGCGACAAGTGCAGCATGGATGAAGACCACGAATTATT TATCCTTGACAAAACTGCCACGCGTTTTTGTGCGGAAAAGACAGCGCCTA TGGGTCTATGAGTAATGGCCGGGGTTTCGAGCATTAGTCCGCTTTGAATT TAATTTGCGCTCGCCGCATGAGTATGCACAGGCGAAATCCCTGGCCCTCT CACAGCGCTTGCCACTAACCACATGCTGCCGGGTTCAACCCCATACACAG AAACAAATAGAAACATACAGAAACACAGACGCACACAACCTCACACACAC ACGTGCCCATGCACACACACACACGCACGCACGCACGCACGCACGCACGC ACGCACTGCAGGCTTTTGCTCTGGTGCCGTGCGAGGGCGGCGTGCCTCCG GGCGAGAGTGTCACCGTCAAGGCCGTTTTCAGCTCGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig6:47992..49628-

>mRNA_P-littoralis_Contig6.10.1 ID=mRNA_P-littoralis_Contig6.10.1|Name=mRNA_P-littoralis_Contig6.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=297bp|location=Sequence derived from alignment at P-littoralis_Contig6:47992..49628- (Pylaiella littoralis U1_48)
AGCCCTTCGCTCGGAAAGAGCATCCGCGTCCGCCTGCGGGGTGAAGGGGT
GAGGCCGGTCCTCAGCATGGTCCCCGCGGATGGCCGTCTGGACATGGGGC
ACGTTCTGGAGGGCGACACGGCGGAGCGGGAATTGAAGCTCCAAAACGAT
AGCGTGTTTCCACTCCGCTACACCACTACACCATTCGGTCCACGGCCACC
CTCCAACATCAACCATTGCGAGGCTTTTGCTCTGGTGCCGTGCGAGGGCG
GCGTGCCTCCGGGCGAGAGTGTCACCGTCAAGGCCGTTTTCAGCTCG
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