mRNA_P-littoralis_Contig596.29.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig596.29.1
Unique NamemRNA_P-littoralis_Contig596.29.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig596.29.1 vs. uniprot
Match: D7FYD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYD9_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 1.980e-27
Identity = 135/203 (66.50%), Postives = 151/203 (74.38%), Query Frame = 1
Query:  172 MTDNYDLRSALAEALPAARPSLAAMRVMDDIAFKADPKNNDMKELFVGLDIAPEEAPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGEGPAGKKKNGIAAAAAIRGVGLARAAGVAGLDVEEAAEDERYLRQANLSKTAAKMSSXXXXXXXXXXXXGTSYEDRYAGKVVNRSKRKGRMMAMKQMY 780
            M ++YDLRSALA+ALPAA P+ AA++ MDDI FKADPKNNDMKELFVGLDIA +E     XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX          + KN +AA                        +D   L++ANLSKTAAKMS XXXXXXXXXXXX T+YE++YAGKVVNRSKRKGRM+AMKQMY
Sbjct:    1 MDNSYDLRSALADALPAAGPTRAAVKAMDDIGFKADPKNNDMKELFVGLDIAQQEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX----------QAKNLLAAG-----------------------KDPASLKRANLSKTAAKMSXXXXXXXXXXXXXXTNYEEKYAGKVVNRSKRKGRMLAMKQMY 170          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig596.29.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYD9_ECTSI1.980e-2766.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig596contigP-littoralis_Contig596:96711..104476 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1896
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_003660.1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791226.207366-UTR-P-littoralis_Contig596:96710..968811680791226.207366-UTR-P-littoralis_Contig596:96710..96881Pylaiella littoralis U1_48UTRP-littoralis_Contig596 96711..96881 +
1680791226.2584481-UTR-P-littoralis_Contig596:103363..1044761680791226.2584481-UTR-P-littoralis_Contig596:103363..104476Pylaiella littoralis U1_48UTRP-littoralis_Contig596 103364..104476 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680791226.2192688-CDS-P-littoralis_Contig596:96881..971501680791226.2192688-CDS-P-littoralis_Contig596:96881..97150Pylaiella littoralis U1_48CDSP-littoralis_Contig596 96882..97150 +
1680791226.2299142-CDS-P-littoralis_Contig596:102292..1024731680791226.2299142-CDS-P-littoralis_Contig596:102292..102473Pylaiella littoralis U1_48CDSP-littoralis_Contig596 102293..102473 +
1680791226.2424858-CDS-P-littoralis_Contig596:103201..1033631680791226.2424858-CDS-P-littoralis_Contig596:103201..103363Pylaiella littoralis U1_48CDSP-littoralis_Contig596 103202..103363 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig596.29.1prot_P-littoralis_Contig596.29.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig596 96882..103363 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig596.29.1

>prot_P-littoralis_Contig596.29.1 ID=prot_P-littoralis_Contig596.29.1|Name=mRNA_P-littoralis_Contig596.29.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=204bp
MTDNYDLRSALAEALPAARPSLAAMRVMDDIAFKADPKNNDMKELFVGLD
IAPEEAPASAAAAAGGPGQAAAGPSAAQVLLDYRREKKAMEEAAQEEAER
MLAAGEGPAGKKKNGIAAAAAIRGVGLARAAGVAGLDVEEAAEDERYLRQ
ANLSKTAAKMSSKQKRRRKQGKEQGTSYEDRYAGKVVNRSKRKGRMMAMK
QMY*
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mRNA from alignment at P-littoralis_Contig596:96711..104476+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig596.29.1 ID=mRNA_P-littoralis_Contig596.29.1|Name=mRNA_P-littoralis_Contig596.29.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7766bp|location=Sequence derived from alignment at P-littoralis_Contig596:96711..104476+ (Pylaiella littoralis U1_48)
AGAGATTTCGTTCAGCACCCAGTTTGTGCAAAGCTAGCGGTCCAGCAGAA CAGCAGGGGGGGCACCGGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAGG AACCCCAAATAAAACACACAAAATATCTCCACCTCATCACGCCGTTCGAT TAGGCCGCAGCAACAAGCAGCATGACGGACAACTACGACCTCCGATCAGC GCTCGCCGAAGCGCTCCCCGCTGCGAGACCCTCGCTCGCGGCCATGAGAG TCATGGACGACATTGCTTTCAAGGCTGACCCGAAGAACAATGACATGAAA GAGCTATTCGTCGGCCTTGATATCGCGCCAGAAGAAGCACCAGCCTCAGC AGCAGCAGCAGCGGGTGGTCCGGGGCAGGCAGCGGCTGGGCCGTCGGCGG CACAGGTGCTGCTGGACTACCGGCGAGAGAAGAAGGCAATGTGAGCGAAC GTATCATGGTAGTGCGCCGAGATGAGATCAGGGGTGTGCCTTTCGGGCGG TTTAGTGTTGTGGTTTCGTTGCGGGCCCCTACGGTAGCGAACTGATATCA TCGGGCACGATGCTTGTGTTGTCATCCCATATTCTCTGGCACACTAGTCT GCACCCTGCAGTTCAAACTACAGGCTAGGCCCATGGACGGGGTCACACAG GAGGAAGGTCAACACAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACA TGCGTGAGGTTTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTC GGCGAAGCCGAATCTGCTTTTACTCACAGCATAGCCGCTTTCAAAGTAGC AAAGGAACACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTG GTTGACGAGGGGACCACTAGTCCGCCGGGGCGACGAGTGAACAGCAGTGG TACAGCAGTACACTCATACCGTACAAGTCTAAGTACAAAAAAAAAAAGGG CTGACCCCAAATAGCGGTACAGCAGCAGTATACCACCTGGTTTCCGCGCC ACAAAGCGGTACACCAAAATACACCTGGGCATTTGAGCCCCGTTCGCGTC GCTGATTGGCTGATTAAACCTCGTAACGCTTTTTGGTGGACCAGTCGGCG GTACATCACATCATCTGGGCTTCTCAGGTCGGCTGTCACCGCTTTTTGGC GCGACCCGTACCGCTTTCTGGCGGGATATTTCCCAGGCCATTCGTCCAAC AGTCTTTTGACACTTCCAAATCACGCATCAACCAAGGAAGCCACGTCACC TAATTACAGAGCCCCAGAGCCCTTTCGGATCGGTGAAGAACCTCTCACGT CCTCCGCACGTTTTCTCTACACCCGACGCCTTCGGGACCTTGCAAGCTGA TGCGTGCTTCTGCGGTGCTCTGCAAGAAGCTGGCAAGAAGGCCAGAACAA TCACCACCACTGCTGCTGCTTTAAAACCAGAAGAAGAGAGCAGTGTTGTA GTGGACCCATGTGAGAACGCGACTCACACCCCCGGCTCAAAACACACACA CACACACGGTGCTGCTCCTTACCAGAATAAAGACCGACTACGGACAAAAC TCGCGCAACCGCAAACAAACACCCTCATACAAGCACGATGACATGCACCT GATTTGGCAGGCTCGGACACATACATACAAACATGGATGATATACCTTGC TTTGCGTATTGCATGCGTTATTTGTTCCCAAATATCGTAACGGTTATTTT TCAAGGCCTCGGACGGCAGTCACGGTGTGTGTATTTGTGCTGGGGTGTGA GTCGCGTTCTCACATGGTCTACATACTACTTTGTCCTGTTTTTTTTACAG CAGCAGCAGTGGTTGTTCCGGTCTTCCTGCCAGCTTTCTTGCAGAGCACC GCAAAAACACAAAGCTCGTGTGTGATCTTCCTGCTGTGTGACCCCGGCTG GTGCACCCACTTTTCATACCGAAAGGTGTAGACTGGTTCCCAGAATAAAT GGGATTGACACACACAAACACGCATTGCAGCAAGCTGTAGAGGTCCCGAA GGGGTCGGGTGCAGAGAAAATGCGCGGAGAGGTTCTTCACCGATTTAGGG CCGGGGATTGTGGAACTGCGTGACGTGCTTCCTTGGTTGATGCGTGAGTT GGAAGTGTCAAAGGCTGTTGGGCGAATGGCCTGGGAAATATCCCGCCAGA AAGCGGTACGGGTCGCGCCAAAAAGCGGTGACAGCCGACCTGAGAAGCCC AGATGTGGTGTACCGCCGACTGCTGGTGCCAAGAAGCGTTACGAGGTTTA ATCAGCCAATCAGCGACGCGAACGGGGCTAAAATGCCCAGGTGTATTTTG GTGTACCGCTTTGTGGCGCGGAAACCAGGCGGTATACCGCTTTTTGGCGT CTGCCCAAAAAAAAAACTCCTGACCTTCCTCCTGTGCGACCGGCTCGTTC ACCCACTTTACACTGAAAAGGGCAGACTGGTGCCCAGAATAATGCAGCTG GAATGTGGGATGCAAACTCACTGAGAGAGAGAGAGAGAGAAGTTTGAAAG GATCGTATTATATCATACTCCGGTACGAAATTAGAGACTTGGCTTCCAGG TAGTTAAGGTCGCGTACGATACCGAGACACTGCTGCTCTAAAACACGTTT GGTCGCATCAATTTAATACCTAGTACACACACACTTCGAAGTACTTGTAA TGATCCTGTATGTATATGTATCATTTCATCATTTTTCATGCTTGGGCATA GATTTCTCCGCCGGCAGCGGTTCTGTACTCGCGATTTTTTTCTGGAGGCA CGCATGAGAGCCGTCGGTACATTACCGTGCAGGTCCGGGGGTCGCCCGGC ATCGGTGGCCCGTGTCCTCGACGCCCGAAGTTTCCTGCATTTGCTCTTTT TCGCGAGATCGCTTTCCGGGCAGAGATCGCCCGCCGAACCAAGTCGAAAC CCACACAAAAATTGGCCCGCGGCTCGCTCTCGTCGTGTGCGTCAGCACTC AACGGCCACCACATGCTCTTTTCAAATCTCTCACAGAAGCAAGCGGCACA CCCATAAACGTCTCAATACGAACACCTCAAATACTCCGTATAACATACCC GCACACCATATGCGACCACCTCACAACGCCCCGTCCCAAACAAGAGAGAA ACTAAGAGACGGACGTTTGTGATGTGATGCAGACAATTTTGACAGAAGTA CAGCAGTAGCATAAAATACCACGTGGAACCCAATCAAACGCACGCCCGAG AAAAAATACCAGAGGATTTCACAATCAGAATTGGAATTTCTCAAGCTTGA GAACTTCGATGTGGGAATTTGGCAATTTGAAATTCGCAAATCACATTCAT CGCATAGTGCTGCGGGTGCAGGCGCGCCCCCTCCGTCACAGACCCTGCTT CACAATCGCAGAAGTCCGCTCTAGCCTATTGGTCTCTCCACCGACAATCG CCCATGCCTCGCCGCACCACCACCGCCAACACCACCGACACTGAGAGCAC CAACACGAACCGGGTAGCTCTGCATTTTCCGCTGGTGGCGCGGCTCTTTG TCCGTCTCCGCCTTCTACACCCCTGTCCTCGGGCGCGGCGGGCGGTGCGT CCCACGACAACCTCGCCGACCGGGAAAGTGTTCCTCCTCACCGGGACCTT TCCTTACTGGGCCCGCGTGATCAGTGCAACATCGCACTTTTCCTGAAAAA AAAAACGCGCAAGAACAAGTCGGACTTTCCAGCATGAATATATCGATCCG GTGATCCCGCGGTATCTTGCCGGAGTGATACCCTTTGCAACCTGCCAGGT GCTGGTGTACATGTGATTCCTCAAAACTACGACTTATTGCAGCAGTACTC TGTTGTGCCTTACTCTGTGTCCGGTCCTCCTACCGAGCCGTGTTGTCCTG CTGTTTCTGAGCCGGAAAATGAAGAATGTCCACACATATCATAGTGCATT GATGTCCGCGGTAAGGCACCCGCAGACTGGAACACGTGCTATCGAACACG TACTATCGAACACGTGCTATCGTTGTCGTTGTTGTTGTTGTTGTTGTTGT TGTTGTTGTTGCTGGTTGTTTGTGTTGTTTGTGGTGGTGGTGGTGGTGTT GGTGTCCTTCTTGTTCGTATTATTGTTTCTGATATTAGCTCGCCGCCGAA GTTTAGCCCTTTGTTGTGAACCAGCCACATCCTTCTGTGGTATACTTTGA AGTATCGTACAAGGGTAAGAACATAGACCAGGCATAAACCATTCTCTGTG ATGATAGGAACAAAAAACTCCTTCGAAGTACGAGGTAAAATCAACCAAAA CAAAGAAAAAACAGGCAAAGATTCCTACGAAGACAAAGATATACCGCGAA CTAGGGGATCTTCGTCGAGGCCAAAATGAAAACCGCACAGGAAAACAGAA CTCTTAGATGGGAGTATATACACACTCGTACGGTATTTTCAGTTTTCCTG GTAACACATCAATGCCTTCGTCCCTCTCCAGGTACTCTCGATACTTGTCA AGTGAAATTGAAACTCGCGAGGAGATGACAGCGCGTGAAGGAGAAGGAAA GGACGCCAAAAGAGACGAAAATGACGAAGGGGTTTAGCGATAAAGAGAGG CGAGACAAAATCAAAGAAACGGGAGGGAGAGGAGGAATCGAAGAAAGAGA AAAGTGCATCAAAGAGGGAAGACACCAAATAGATGGGTTCACGCGCAATC AGTCGCAATCATGTCTCTCCACAAGGTCCTGCTCACGCTTGCTCTCCTTC CGCATACGCATGCCTCCTGTGACTCGTATGTTTGATACCACAGCACCCTT ACTACTTACGCCGCCCCCCAATTTAGTTCGTACATTTTTACCAGCAACAC CACACTCGCTTCCGCAAGTTCTGCCCTTCATGTTTTTTCACGGCACCACC GCCATACATAGCTTGGTTTGCTTTTTCTGCCTCACGTGTGTGTGTGTGTG TGCTTTTTTATTTGTCTCCTATCTATCCTGGTCGCCAGCATACGCCTCTC GGTGTATATAGGGCGCACCAGCAGGTGACACGCACAGCAGTTTCAACACA GGAGTTTTTTTTTTCGAATTAAGGCAAGAACCGCAGCGGGAAGTGGAGAA AAAAATAACTCCTACTGTATCTGTGACCCCGGTTGGTGTGTCTACCTACC CGAAAGGTAATCGCGTGGCGTCCAATTACAGGGATGACAACACACACGCA CGCACACACACGCACACACGCACACACGCACACACGCACACACAACTTTT TTTAGCACTCTGGGTTTTTCGCGCTCTCCGTGCTTTACTTTTTATCGTAA CGTTGTACAAACAATTGTATGATCCTAACGGAGCCCACGATTGTCAAGGA ACAAGAGTAGGTGGTGGTTTCCTCCCCCTCTGCACCTACGACCTTCGAGA AAGATGACGACGACTACACAATGACTGCAGTCATCGCGGAGGACGATGGT GTACCACAGCAGCACTTGGCGCGCGTGGCGATTGCGACCACCACTCGGGG GAATGGTTTGAGTAAACGATCATTAAAAGCTGTCGTCTGAAAAAAACGAG TTGCAGCAGCATGATCCTCGCGTTTACGCAATGCATAATCATACGTTCTC GCAAAACCACCCCTCCTGACACAACCGGACAGGGAGGAGGCTGCGCAAGA GGAGGCCGAAAGGATGCTGGCGGCGGGCGAAGGTCCAGCAGGGAAGAAGA AGAACGGCATCGCTGCTGCTGCTGCGATTAGAGGGGTCGGGCTGGCTCGG GCGGCGGGAGTGGCAGGCCTGGACGTGGAGGAGGCGGCGGAAGACGAGCG TTACTTGCGACAGGTGAGGCACAACACGTCTGCGTTTGGACACCGCCACC CTCGCGTACCATACCAGTTAGCAATCGAGCAGGTTTGGAAAGGGCACGCG TCGGGGAGAAAGAGGAACCCGCTGTGGGGCACTGTACCTTTTCGGTTTGT TCCCGTCGCCGACTCGGCCCGGGATCGGTTACCACTGCTGCACGCGTACA TGCAGCTTTCGCGATCAACATCTGACAATAAAAAATAGAGTCACGGCATG AAAGGACAAGATGGATTGTATAACTTGCGCATTCCAAGTCAATCGACTCG ACTTGTTGCCATCTTGACAAGTGTTTATTTGATCCCTCTCGCTGGCGTTC CCTTGTTGGTTGTCACCCAACCGTGGTGTTCCGTGCTTTTTAGTAAGAAC ACACACGTTCTAACGCAATTTCTCAGTGACTGAACAAAAAAAAAAGAGCG GTGGACTCTAGTTGTCCCACCTACCTTCCCCCAGGAAGCTCCGTGCGGTA GCGTTACGCAGAAGAAGTCGCAAGCGAGAAAACAACAGTTGGCTTTCTTC TGTAGTTTGTGCAACGCCGCTGCTGTATATCATTGATGCGGGCTGGTGGT TTTGGGGGGCTATTGCCCTTGCCCCTTCAGAACTGGCACAAACCGAGCAC CACCCCAAATCTAACCCATGTGCTGTTGTTGTGCCTTCGCCGGGTGTGGG GAATTGGCTGGACACGGGCATTGGCGCATTGGCGTGCGCAGGCGAACCTC TCGAAGACGGCGGCGAAGATGAGCAGCAAGCAGAAGCGGAGACGCAAGCA GGGCAAGGAGCAAGGCACCAGCTACGAAGACAGATACGCCGGCAAGGTCG TGAACAGATCCAAGCGAAAGGGCAGGATGATGGCCATGAAGCAGATGTAT TGATTTGTGTTGATTTGATTTGATCGGGTTTGGATAGATCCAATCGGAAG GGCAGAGTGACGACCATGAAGCAGGTGTATTGGTTTGTTTGGTTTGATTG GGTTGGGTCGGATTTGATGCGATTCGTCGTGTGCGTTTGTTTTGTATTTT TGTATTTTTTTGTTTTTCGGGCTTGCCATCAGAAAGCCAAGCCGATATGC TGATTACATTCAATGTTTGCGGTTTTGTTTTCGCATATAGGATTTGGTGT AATGCGCGGTTGTCTCCAATCGACTGGGCTCGACGTGCAGATGTCAATCA CACGTGGTACTGCGTGTTCAAGCACTTTTTTGGATTCAGTGCTGTTTTGG TGTGACGTCGATGGGCCGAGTATTTGCGGCATTCGGGTTGATTTTAGCAC TGCCCCACGAAACAGGCATGTTGTACGTGGGAAATCCGAGGTGCGAAACC AGACTCTTATCGCCACACGCACCAAGTACCTGGTAGTCTATTTTGGTTTG GGTTTTGCCGGAATTCGGGTGTCTGCTTGGAGGTGGGTGGGTTCGAATTG TTGGTTCAGTCGATTTATGCGGGTTTACCTGGATCAATTTGGTAGGCGTG CTGGCGTGGTGCTGCTATCGTATCATATTAGTTGGAATCGTTTGGCCGGG CTTGTTGGTGGGTGGGTGAAGATTGGGTTTTAAGTTGGGTTTACGCTCAT TTTGTTCATGCATTTGGGTGTCGATATGTTGTGTGATTTGACGAGACGGA TTCATCCTTTTGTGTTGCAGGGAATTCGTTGTCGGTTTGTTGTATTGAGA GCTGTTTGTGTCGAGCATGTGCGTGAATGTGTCGAGCACATCGTCGCTGT GACTATACGTTTGTGCGTTCAGCAGTAAAAATCAGGAATCGAGAAAAATG AGAAGACAAATTACACTCGTTTTAAAAGAAGAGTCAAGTGACACTCTTAT GAAATTAGCTTGTGTCGTCGCACCATGTGTTGTGTTGAGGGCAGTACTCC GCAAGCACCGCCGGTGCAAAAGTCAGTGCACCGTGGAACGCTTTGTCGTA ACGGACTACCCGCTCGTCAATTTTATTCGGTTGCGCCCTGCAACTGCGTG TGTGGGTGTCTGCGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig596:96711..104476+

>mRNA_P-littoralis_Contig596.29.1 ID=mRNA_P-littoralis_Contig596.29.1|Name=mRNA_P-littoralis_Contig596.29.1|organism=Pylaiella littoralis U1_48|type=CDS|length=612bp|location=Sequence derived from alignment at P-littoralis_Contig596:96711..104476+ (Pylaiella littoralis U1_48)
ATGACGGACAACTACGACCTCCGATCAGCGCTCGCCGAAGCGCTCCCCGC
TGCGAGACCCTCGCTCGCGGCCATGAGAGTCATGGACGACATTGCTTTCA
AGGCTGACCCGAAGAACAATGACATGAAAGAGCTATTCGTCGGCCTTGAT
ATCGCGCCAGAAGAAGCACCAGCCTCAGCAGCAGCAGCAGCGGGTGGTCC
GGGGCAGGCAGCGGCTGGGCCGTCGGCGGCACAGGTGCTGCTGGACTACC
GGCGAGAGAAGAAGGCAATGGAGGAGGCTGCGCAAGAGGAGGCCGAAAGG
ATGCTGGCGGCGGGCGAAGGTCCAGCAGGGAAGAAGAAGAACGGCATCGC
TGCTGCTGCTGCGATTAGAGGGGTCGGGCTGGCTCGGGCGGCGGGAGTGG
CAGGCCTGGACGTGGAGGAGGCGGCGGAAGACGAGCGTTACTTGCGACAG
GCGAACCTCTCGAAGACGGCGGCGAAGATGAGCAGCAAGCAGAAGCGGAG
ACGCAAGCAGGGCAAGGAGCAAGGCACCAGCTACGAAGACAGATACGCCG
GCAAGGTCGTGAACAGATCCAAGCGAAAGGGCAGGATGATGGCCATGAAG
CAGATGTATTGA
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