mRNA_P-littoralis_Contig211.83.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig211.83.2
Unique NamemRNA_P-littoralis_Contig211.83.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig211.83.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig211contigP-littoralis_Contig211:330005..330962 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size308
Hectar predicted targeting categoryother localisation
Exons2
Cds size216
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790031.0270379-UTR-P-littoralis_Contig211:330004..3300941680790031.0270379-UTR-P-littoralis_Contig211:330004..330094Pylaiella littoralis U1_48UTRP-littoralis_Contig211 330005..330094 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790031.0371249-CDS-P-littoralis_Contig211:330094..3301911680790031.0371249-CDS-P-littoralis_Contig211:330094..330191Pylaiella littoralis U1_48CDSP-littoralis_Contig211 330095..330191 -
1680790031.0469842-CDS-P-littoralis_Contig211:330843..3309621680790031.0469842-CDS-P-littoralis_Contig211:330843..330962Pylaiella littoralis U1_48CDSP-littoralis_Contig211 330844..330962 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig211.83.2prot_P-littoralis_Contig211.83.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig211 330095..330962 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig211.83.2

>prot_P-littoralis_Contig211.83.2 ID=prot_P-littoralis_Contig211.83.2|Name=mRNA_P-littoralis_Contig211.83.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=72bp
DSPQARVNPQTSVNVSTIFKKHTIRTTRGTTPAIVRQESRDFLSPDVDED
TRANIRRLEVTGAVTPWRQPI*
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mRNA from alignment at P-littoralis_Contig211:330005..330962-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig211.83.2 ID=mRNA_P-littoralis_Contig211.83.2|Name=mRNA_P-littoralis_Contig211.83.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=958bp|location=Sequence derived from alignment at P-littoralis_Contig211:330005..330962- (Pylaiella littoralis U1_48)
GACAGTCCTCAAGCGAGGGTGAATCCACAGACCAGCGTCAACGTGAGCAC
CATTTTTAAGAAGCACACAATAAGGACAACAAGGGGAACGACCCCGGCCA
TCGTCCGCCAGGAATCGCGGTGGGTGAAGAAAGCTGCCCTATATTGCCGT
TGAATTTAGCGGGAGACTCCCAGACTGTTGTGTGTTGTCATCCCATATTC
TCTGGCACACTAGTCTGCACCCTGCGGTTCAAATTACAGGCTAGGCCCAT
CGACGGGGTCACACAGGAGGAGTTACCCCCACCTTCCTTCTACGGTACAT
GCGTGATATTTTTTCTCGCGAGCAGGGATCCGCGGTCCCTACCCTCGTCG
GCGAAGCCGAATCTGCTTTTCCCAACAGCATAGCCGCTTTTAAAGGTAGC
AAAGGAACACATTCACCGGGAATCGAACCCCCGTTCCTCTGCATCTAGTG
GGTAACGAGGGGACCACTAGTCCACTGTGTGTGTGCATGTGTGTGTGTCA
TCCCTTTAATTATTGGACTGCAATCAGGAATACGCAAAACGAGCTGTAAC
GTTTCTCATTCGTTGGTGGATCCCGCACTCTTGTACCTTCGATCCTCCGG
CTATTGCACCCACTTCGCACCGAAAGTTGATGAGTGTTGAATGGTGGTGC
CCAGCGGAACAAATAGGACGAAAACATACACACACACACACGCGCGCGCG
CGCGACTCCTCTGCTAGCGAGGCAAGCCTCATGTGTGAGTTCAAGAAACT
TCCCTCCGTTGTTTTGGTCAGGGACTTTCTCAGCCCGGACGTCGACGAGG
ACACACGGGCAAATATTCGTCGCCTCGAGGTAACGGGAGCTGTTACACCA
TGGCGTCAGCCGATCTAGCAGTTAAGACGCCCATTTTTGCTGCAGCAGCC
ATGTTGAATGCCCGAGAAGATGGATCCATCAGACAGACAAAAGTGGCAGA
CATAGTAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig211:330005..330962-

>mRNA_P-littoralis_Contig211.83.2 ID=mRNA_P-littoralis_Contig211.83.2|Name=mRNA_P-littoralis_Contig211.83.2|organism=Pylaiella littoralis U1_48|type=CDS|length=216bp|location=Sequence derived from alignment at P-littoralis_Contig211:330005..330962- (Pylaiella littoralis U1_48)
GACAGTCCTCAAGCGAGGGTGAATCCACAGACCAGCGTCAACGTGAGCAC
CATTTTTAAGAAGCACACAATAAGGACAACAAGGGGAACGACCCCGGCCA
TCGTCCGCCAGGAATCGCGGGACTTTCTCAGCCCGGACGTCGACGAGGAC
ACACGGGCAAATATTCGTCGCCTCGAGGTAACGGGAGCTGTTACACCATG
GCGTCAGCCGATCTAG
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