mRNA_P-littoralis_Contig211.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig211.72.1
Unique NamemRNA_P-littoralis_Contig211.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: D8LTT3_ECTSI (Eukaryotic translation initiation factor 4E-like 1 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTT3_ECTSI)

HSP 1 Score: 384 bits (985), Expect = 3.540e-127
Identity = 176/194 (90.72%), Postives = 188/194 (96.91%), Query Frame = 1 
Query:   49 MSNGNAEQLHPLQNTWCIWEHKVAKSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERLKMCLKDRNLHEKFMPSFDWKSHGGR 630
            M+NG+AEQLHPLQNTWCIWEHKVAKSSA+W DSMQSLAEF+TVEDFWKVYNNVPKPSQVMFDG+ RKKVG+RVIDSYSIFKKGIKPEWE+P+NSHGGEWQSRS+MTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSND +TAARLLERL+ CL DRNLHEK MPSFDWK+HGGR
Sbjct:    1 MANGSAEQLHPLQNTWCIWEHKVAKSSADWGDSMQSLAEFATVEDFWKVYNNVPKPSQVMFDGSMRKKVGDRVIDSYSIFKKGIKPEWEAPENSHGGEWQSRSKMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDGNTAARLLERLRACLADRNLHEKLMPSFDWKAHGGR 194
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BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: A0A835ZBP0_9STRA (Eukaryotic translation initiation factor 4E-like 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBP0_9STRA)

HSP 1 Score: 257 bits (656), Expect = 3.850e-78
Identity = 112/182 (61.54%), Postives = 139/182 (76.37%), Query Frame = 1 
Query:   76 HPLQNTWCIWEHKVAKSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERLKMCLKDRNLHEKFMPSFDWKSH 621
            HPLQN+WCIWEH+ +K+S++W  +M SL EF+TVEDFW+ YNN+PKPSQV FDG +RK+VG+R I+S+SIFKKGI+PEWE P N+ GGEW  R R+ P  LD  WE++VLGL+GET+D  DEICGARVVDKS+     YRFELWLR+ +  T ARL ERL  CL D N   K +P F +K H
Sbjct:   11 HPLQNSWCIWEHEASKNSSDWGSNMTSLGEFNTVEDFWRFYNNIPKPSQVFFDGKSRKRVGDRQIESFSIFKKGIRPEWEDPANARGGEWSCRERLQPIVLDTLWESLVLGLIGETIDWADEICGARVVDKSRGKDTYYRFELWLRAREPGTTARLKERLLSCLADGNPSTKGLPDFSFKDH 192
[Close]
BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: A0A7S2XVT5_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVT5_9STRA)

HSP 1 Score: 209 bits (532), Expect = 4.670e-60
Identity = 90/187 (48.13%), Postives = 123/187 (65.78%), Query Frame = 1 
Query:   61 NAEQLHPLQNTWCIWEHKVAKSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERLKMCLKDRNLHEKFMPSFDWKSH 621
            N    HPL+NTW IWEH+  K+  +WA +MQ +  F+TVEDFW  YN++PKPS + +DG TRK+VG+R ++S SIFK+GI PEWE P N+ GGE+  R    P  LD  WEN+++G++GET+D  D I GARVVDKSK    VY+ ELW++S +      L   +   + D  + +K M  F+WK H
Sbjct:    4 NPGDTHPLENTWSIWEHRATKNQGDWAGNMQKICTFATVEDFWAYYNHIPKPSAIFYDGQTRKRVGDRQLESLSIFKEGINPEWEDPVNAKGGEFSCRKTFDPVTLDKLWENLLMGIIGETIDWADHISGARVVDKSKGTRAVYKLELWVKSKEMDANETLKSNMLNVIFD-GIEQKLMVDFEWKKH 189
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BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: R1BIV2_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1BIV2_EMIHU)

HSP 1 Score: 195 bits (496), Expect = 6.390e-55
Identity = 83/164 (50.61%), Postives = 113/164 (68.90%), Query Frame = 1 
Query:   76 HPLQNTWCIWEHKVAKSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERLKMCL 567
            H L++ W IWEH+    +  + D+M  L E +TVEDFW+ +NN+PKPS++ +DG TRKK  +R ++++S+FKK IKPEWE P N  G EW  R   T   LD FW ++VLG++GET+D GDEICGARVVDKS N   +YR ELW R ND + +  LL +++  L
Sbjct:    8 HFLESEWVIWEHRAPDKNKSYEDNMAKLCEVATVEDFWRAWNNIPKPSEIFYDGRTRKKFASRTVEAFSVFKKNIKPEWEDPANRSGAEWYCRRAFTMPQLDEFWLHIVLGMIGETLDAGDEICGARVVDKSVNGRTMYRLELWFRKNDDALSKELLAKMQEAL 171
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BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: A0A7S2CNW6_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2CNW6_9EUKA)

HSP 1 Score: 193 bits (491), Expect = 4.590e-54
Identity = 86/176 (48.86%), Postives = 116/176 (65.91%), Query Frame = 1 
Query:   46 AMSNGNAEQLHP-----LQNTWCIWEHKVA-KSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERL 555
            A SNG+   + P     L++ W IWEH+   K+S  + D+M+ L E +T+EDFW+ +NN+PKPS + +DG TRKK  NR ++S+S+FKK IKPEWE P N  G EW  R     Q LD FW ++VLG++GET+D  D+ICGARVVDKS     +YR ELW +  D + A  LL R+
Sbjct:    2 ADSNGDVSPMPPGGPHFLESEWVIWEHRSPDKNSKSYEDNMEKLCEVATIEDFWRAFNNIPKPSAIFYDGRTRKKFANRSVESFSLFKKNIKPEWEDPMNRSGAEWFCRKTFASQQLDEFWRDLVLGMIGETIDPADDICGARVVDKSSGTRQMYRLELWFKRKDDAVAQELLNRM 177
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BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: A0A7S3EX75_9EUKA (Hypothetical protein n=2 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3EX75_9EUKA)

HSP 1 Score: 193 bits (491), Expect = 5.920e-54
Identity = 89/177 (50.28%), Postives = 118/177 (66.67%), Query Frame = 1 
Query:   49 MSNGNAEQ---LHPLQNTWCIWEHKVA-KSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERLKMCL 567
            + NG A +   LH L++ W +WEH+   K+S  + D+M+ L E +TVEDFW  +NN+PKPSQ+ FDG T+K+  NR ++S+S+FKK IKPEWE P N  G EW  R     Q LD FW+N+ LG++GET+D GDEICGARVVDK      +YR ELW +  DQ  A  LL R++  L
Sbjct:   13 VGNGEAMKPNGLHFLESEWVLWEHRSPDKNSKSYEDNMEKLCEMATVEDFWCAWNNIPKPSQIFFDGKTKKRFANRSVESFSLFKKNIKPEWEDPANRAGAEWFCRRNFPMQQLDDFWQNLALGMIGETIDHGDEICGARVVDKCAGGRCMYRLELWFKKKDQGIADELLGRMQSVL 189
[Close]
BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: A0A7S2LDB2_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2LDB2_9STRA)

HSP 1 Score: 189 bits (479), Expect = 4.230e-52
Identity = 88/198 (44.44%), Postives = 130/198 (65.66%), Query Frame = 1 
Query:   58 GNAEQLHPLQNTWCIWEHKVA--KSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVG--NRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVD---VGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERLKMCLKDRNLHEKFM---PSFDWKSH 621
            GN ++LHPL++ W +W+H     K +  W DSM+ L  FST+EDFW+ +N+VP+PS++ +DG ++KKVG  N VI+ YS+FKKGI+PEW  P N  GGEW  R+ +    LDLFW+N+VLG++GE+++   +G  I G RVVDK KN + +++ ELW+ + D     ++  +L  CL +     KF    P F+WK H
Sbjct:   16 GNQKKLHPLEHEWVLWKHIACHKKDANAWKDSMKELGTFSTIEDFWRYFNHVPRPSEIFYDGESKKKVGMNNEVIEEYSLFKKGIEPEWGDPLNKPGGEWFWRTHLDSDVLDLFWQNLVLGVIGESIEEASLGLHINGVRVVDKGKN-YPIFKIELWMDTKDVEVREKIRTKLVECLTNGLPAHKFAKNNPRFEWKDH 212
[Close]
BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: A0A7S0HHF8_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0HHF8_9EUKA)

HSP 1 Score: 189 bits (481), Expect = 5.040e-52
Identity = 82/161 (50.93%), Postives = 113/161 (70.19%), Query Frame = 1 
Query:   76 HPLQNTWCIWEHKVA-KSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERL 555
            H L++ W +WEH+   K+S  + D+M  L EF+T+EDFW+++NN+PKPS + +DG T+KK  +R ++S+S+FKKG+KPEWE   N  G EW  R       LD FW+++VLG+VGET+D  DEICGARVVDKS     +YR ELW R  D++ A  LLER+
Sbjct:   62 HFLESEWVMWEHRAPDKNSKSYEDNMAKLCEFATIEDFWRLWNNIPKPSAIFYDGRTKKKFKDRTVESFSLFKKGVKPEWEDAANRTGAEWFCRKTFPMPQLDSFWQDLVLGMVGETIDPADEICGARVVDKSSGTRCMYRLELWFRKKDETIAKELLERM 222
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BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: A0A2R5GD67_9STRA (Eukaryotic translation initiation factor 4E n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GD67_9STRA)

HSP 1 Score: 188 bits (477), Expect = 9.550e-52
Identity = 89/188 (47.34%), Postives = 118/188 (62.77%), Query Frame = 1 
Query:   64 AEQLHPLQNTWCIWEHKVAKSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGAT-RKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERLKMCLKDRNLHEKFMPSFDWKSHG 624
            A+ LHPLQNTW  WEH+   + +++   M  L EF TVEDFW+  NN+P+PS+V +   +  KK  +R ID +S+FK GI+PEWE   N +GGE+  R  M P  LD  WE ++LGLVGET+D GDEICG RVVDKSK+N   YR E+W RS D+     L  +++ CL    L E    +    +HG
Sbjct:    7 AKGLHPLQNTWAFWEHRKGGTGSDYGSKMFQLGEFETVEDFWRFKNNLPQPSEVFYTPQSGHKKFVDREIDGFSMFKGGIRPEWEDKANMYGGEFFCRQTMAPAQLDNAWEKLLLGLVGETIDNGDEICGVRVVDKSKSNRPTYRLEMWFRSRDKDVLEHLRTQVQKCLGANLLKEYMEHNVAMNTHG 194
[Close]
BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Match: A0A7R9WYN1_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WYN1_9STRA)

HSP 1 Score: 186 bits (473), Expect = 4.990e-51
Identity = 87/198 (43.94%), Postives = 125/198 (63.13%), Query Frame = 1 
Query:   67 EQLHPLQNTWCIWEHK--VAKSSAEWADSMQSLAEFSTVEDFWKVYNNVPKPSQVMFDGATRKKVGN--RVIDSYSIFKKGIKPEWESPQNSHGGEWQSRSRMTPQALDLFWENMVLGLVGETVDVG--------DEICGARVVDKSKNNHNVYRFELWLRSNDQSTAARLLERL-KMCLKDRNLHEKFMPSFDWKSH 621
            E LHPLQN W +WEHK    K   +W ++M+ L EF+T+E+FW+ +NN+PKPS+V FDG  +KK+G   R +  YS+FKKGI+PEW  PQN+ GGEW  R     + LDL+W N+V+GLVGET++          D + G RVVDKS+ +   YR E+W+ + D     R+ +RL  + +  ++   + +P F WK H
Sbjct:   31 ESLHPLQNAWVLWEHKSSTTKDPTKWKENMKQLCEFTTMEEFWQNFNNLPKPSEVFFDGQCKKKIGEDGRTVAEYSLFKKGIEPEWSDPQNTIGGEWFCRQSFELEILDLYWINLVMGLVGETIEDAINSDSKGNDHLNGVRVVDKSRGSLPQYRLEVWINTRDAVVRDRVKQRLIDVAVNGQDSANRTVPRFSWKDH 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig211.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LTT3_ECTSI3.540e-12790.72Eukaryotic translation initiation factor 4E-like 1... [more]
A0A835ZBP0_9STRA3.850e-7861.54Eukaryotic translation initiation factor 4E-like 1... [more]
A0A7S2XVT5_9STRA4.670e-6048.13Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
R1BIV2_EMIHU6.390e-5550.61Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S2CNW6_9EUKA4.590e-5448.86Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A7S3EX75_9EUKA5.920e-5450.28Hypothetical protein n=2 Tax=Haptolina ericina Tax... [more]
A0A7S2LDB2_9STRA4.230e-5244.44Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
A0A7S0HHF8_9EUKA5.040e-5250.93Hypothetical protein n=1 Tax=Phaeocystis antarctic... [more]
A0A2R5GD67_9STRA9.550e-5247.34Eukaryotic translation initiation factor 4E n=1 Ta... [more]
A0A7R9WYN1_9STRA4.990e-5143.94Hypothetical protein n=1 Tax=Craspedostauros austr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig211contigP-littoralis_Contig211:222369..230766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LTT3
PFAMsIF4E
Model size2084
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K03259,ko:K03715,ko:K07521
KEGG ReactionR02691
KEGG Pathwayko00561,ko01100,ko01521,ko03013,ko04066,ko04150,ko04151,ko04211,ko04360,ko04910,map00561,map01100,map01521,map03013,map04066,map04150,map04151,map04211,map04360,map04910
KEGG ModuleM00428
Hectar predicted targeting categoryother localisation
GOsGO:0000082,GO:0000278,GO:0000339,GO:0000340,GO:0000932,GO:0001662,GO:0002209,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005845,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006807,GO:0006950,GO:0006952,GO:0007049,GO:0007275,GO:0007346,GO:0007399,GO:0007610,GO:0008134,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009410,GO:0009719,GO:0009725,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010558,GO:0010605,GO:0010608,GO:0010629,GO:0010721,GO:0014070,GO:0016281,GO:0016442,GO:0017148,GO:0019222,GO:0019538,GO:0019827,GO:0019899,GO:0022008,GO:0022402,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031332,GO:0031369,GO:0031370,GO:0031960,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032870,GO:0032991,GO:0033391,GO:0033555,GO:0033993,GO:0034248,GO:0034249,GO:0034518,GO:0034641,GO:0034645,GO:0035690,GO:0035770,GO:0036464,GO:0042221,GO:0042493,GO:0042596,GO:0043043,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044424,GO:0044444,GO:0044464,GO:0044770,GO:0044772,GO:0044843,GO:0045595,GO:0045596,GO:0045664,GO:0045665,GO:0045787,GO:0045931,GO:0048471,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048545,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050768,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051246,GO:0051248,GO:0051384,GO:0051716,GO:0051726,GO:0051960,GO:0051961,GO:0060255,GO:0060284,GO:0065007,GO:0070491,GO:0070887,GO:0071310,GO:0071383,GO:0071384,GO:0071385,GO:0071396,GO:0071407,GO:0071466,GO:0071495,GO:0071548,GO:0071549,GO:0071704,GO:0080090,GO:0097159,GO:0097327,GO:0098727,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901654,GO:1901655,GO:1901700,GO:1901701,GO:1903047,GO:1990904,GO:2000026,GO:2000112,GO:2000113
Exons5
Evalue3.35e-135
EggNOG OGsCOG5053@1|root,KOG1670@2759|Eukaryota
Ec32 ortholog descriptioneukaryotic translation initiation factor 4E- like 1
Ec32 orthologEc-28_002900.1
EC2.4.1.46
Descriptiontranslation initiation factor activity
Cds size585
COG categoryJ
CAZyGT28
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko03012,ko03019,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig211.72.1prot_P-littoralis_Contig211.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig211 222417..229315 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.9580035-UTR-P-littoralis_Contig211:222368..2224161680790032.9580035-UTR-P-littoralis_Contig211:222368..222416Pylaiella littoralis U1_48UTRP-littoralis_Contig211 222369..222416 +
1680790033.0337183-UTR-P-littoralis_Contig211:229315..2307661680790033.0337183-UTR-P-littoralis_Contig211:229315..230766Pylaiella littoralis U1_48UTRP-littoralis_Contig211 229316..230766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.9721699-CDS-P-littoralis_Contig211:222416..2224821680790032.9721699-CDS-P-littoralis_Contig211:222416..222482Pylaiella littoralis U1_48CDSP-littoralis_Contig211 222417..222482 +
1680790032.9840424-CDS-P-littoralis_Contig211:226549..2266571680790032.9840424-CDS-P-littoralis_Contig211:226549..226657Pylaiella littoralis U1_48CDSP-littoralis_Contig211 226550..226657 +
1680790032.9970715-CDS-P-littoralis_Contig211:227193..2273611680790032.9970715-CDS-P-littoralis_Contig211:227193..227361Pylaiella littoralis U1_48CDSP-littoralis_Contig211 227194..227361 +
1680790033.0057018-CDS-P-littoralis_Contig211:228126..2282751680790033.0057018-CDS-P-littoralis_Contig211:228126..228275Pylaiella littoralis U1_48CDSP-littoralis_Contig211 228127..228275 +
1680790033.0141191-CDS-P-littoralis_Contig211:229221..2293151680790033.0141191-CDS-P-littoralis_Contig211:229221..229315Pylaiella littoralis U1_48CDSP-littoralis_Contig211 229222..229315 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig211.72.1

>prot_P-littoralis_Contig211.72.1 ID=prot_P-littoralis_Contig211.72.1|Name=mRNA_P-littoralis_Contig211.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=195bp
MSNGNAEQLHPLQNTWCIWEHKVAKSSAEWADSMQSLAEFSTVEDFWKVY
NNVPKPSQVMFDGATRKKVGNRVIDSYSIFKKGIKPEWESPQNSHGGEWQ
SRSRMTPQALDLFWENMVLGLVGETVDVGDEICGARVVDKSKNNHNVYRF
ELWLRSNDQSTAARLLERLKMCLKDRNLHEKFMPSFDWKSHGGR*
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mRNA from alignment at P-littoralis_Contig211:222369..230766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig211.72.1 ID=mRNA_P-littoralis_Contig211.72.1|Name=mRNA_P-littoralis_Contig211.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=8398bp|location=Sequence derived from alignment at P-littoralis_Contig211:222369..230766+ (Pylaiella littoralis U1_48)
CCATAAACCCAAAGGAACAGCGGCAGTGATCGACCAGCGAGGACAGCCAT
GTCGAACGGAAATGCAGAGCAGCTTCACCCTCTCCAGAACACGTGGTGTA
TATGGGAACACAAGGTAGGTAAATAAATTCAGTAGTAACCGCGGCATCTT
TCTTTCTCTCTTGGTGGCGGCTTGATTTCTTGCGGTTGTGCCCTCGAGGC
ACCAGACACACCTGTTCTCGTGACAGAGGGAGGGAGATTGGACCCAACGT
CAATGTAGCACGGTAACGGCTCTGATGTGCTAATGCATTACCCTTGTCAC
CACCTACTGCCGTGGTAGAGCTTGTGCCGGTTTCCCTCTTCAAGATTATG
TCCTATACTACGAAATAGTTGGGGTCACAATTATTGCCCAGGGCCGCAGC
CGCAAGAAAACTACGATGGTACTACGCTTGTATCGTGCATTATGATACCT
AAAACGCAAGAGGACAATTCAACGACGAGCTCCTCTCATGACACAATTTA
CCCCACCCCACCCCAACTCAGTCGTCGACCCGGGCCTCGATATTTGGCAG
CAATAGAGAGAGGTTAAGCAAAACCAAATGAGACTTGCGAGGAAAGTTCT
CAAACATAACCTCGTGGATTCTCCCTGCTGTTTGGATTGACAAAAGGGGG
GGGGGTATCTAGCGTCTATGTTGTGATCTGTGGAATTGGGATCAGTTCTT
CCTGATAGGCCGCAGGCCGGGCGTGCGGCATCCGTAGGACTGATTGGGAC
GGACTGGTGCCGGCTGCTGGTACGGGCACAGGGGGCACGGCATTTTCATG
GCTGTCGACAAAATCGAGCCACATGTAGACATGCAGATCAGTGCAGTATG
TTTCCTCCTTCCTGCAGCTGTGTCGCATTGAATTTGACGAAGAAGTGCTT
TGATACCGGTAAAGCACAGCAGTATGATATCATATACGAAGTACTCCGGA
GTACTTCGATATGAAGTAATTTGACACTTCGAAGTATGTCTCACCGACAT
CCTCTGACGGCATGATGTCACCTGTCCACGATGATACGAGTACAAGGGCT
CCGGACTGGGCCGCCTTCGTCGTCCTGTTCCTCAGTTTTGGAGGGTCTGA
AAGGAGGCTCGTGTACCGTATTCTACACAAGATACCACACCCCGTGTTAA
GCTTTTTGCATTCCGTATAGCTCCACAACCAGGAGGGTGCCACTGCCGAA
AAGGGTGGTTTTGGAAAGATCTCGTCGAGAACTTTCGTATGACGGGCTGT
TTGGTGTTCACACCCTCCTGGTTGTGGAGCAATACGGAATGCAAAAAACC
TAACACGGGGTGTGGTATCTTGTGTAGAATACGGTATTTGCGTCGAGAAG
TCCATACGACACCAAAAGAGCGAAGCTCACGATCGGAGCAGGCATTAGAC
GGTTGCAGAGGAAAGTGGAGGCGTTTGTGCGAAAATCGGGACGATGTTCC
TCGACAGGCAATAGAAAATAACATACTAAGTACAAGGTAAAAATACAAAA
AAGCTTGGGTTTGCTGAAGCGGTGAATCCTTCATCGGAGCGTGGAAGTTA
GGCTGAAGTGTGCGGGCCGGCGCCGTCGTTGACTGAAAGCCGCAACAAGC
AGACTTCCAGGCTACGCGTCTCGTAGGTGGATACGCAACAGGAACAACAC
GAGTTGTTGATGTATTTCAATGCGTTCCAGCAGCTGGTTCTAGAAGGGAG
AAGCCCGTGGAATGTGGAATCCCTGTCTGAAAAATCGATAGATGCAGTTT
TTTTTTCTCCTAGACCGGATACCCGCAACTTCCGTGTTTTGAACTTTCGA
TGAAAGAGAAAGCTGAGTCGGTGGCATCATTTATGTCACGGCCATGCGAC
TACACGGTCCTCTCCGACTTCGACCAAGGCCGGCGCACAGGTCTGCAACG
CAGATGTATCCCTTCCGATGTGCTGGCGTGTTGTGAGGGTGTGTGTATTT
TGTGTGTGCATGTGCGTGTGCGTGCTGCACAGACCGAGCTGCAGTACAGT
AGCGGATTCTACAAGGAAAGTCCAATTGTTTGTCGAACCACGTTTTTATT
TTTATATCTGTGTACACTGCTGCTGTATCTCGCAGAGTTTACTTACTCGT
GTTTAACACTCGCATAGAAAAAAATACCGCTTTTGCCTGTCATGGTTGAC
GGTTCACAAAATAACAGATATATCCCGCTCTATCTGCGACAACATGTCGC
CACGCAAGGTCGCGCATCCGCCAAAAGCAACCAAACCACGCAGTCTGTGA
TACAGTAGAATATCTGCGTCCACCTGCGCATTTGCGCGCGACTTTTTATT
TTTGGGAGCGTAGACCGGGCCGCAGATTCACAGCACATCTGCGCAGCATC
GACGCAATGGTCACGAATCAATGAATCGAAAACTTAAGTGCGTTGCCAAA
CCGCACGACTTTGAGGTCAACCTCTTGAATACTTTACTGGCTTCTGTTCC
TAGCAGATTTCGTTTCATCATGGTTGACCTCCTCAAATAATAGTACCCCG
CTCGTTGCGGTTGGGTGCTGAAACGCCTTAGCGGTTGGGTACTGAAACAA
CACGTACTGACAAGTGCCAGAGGACTGGCCGGCTCCGTAGCCCTGGCTGA
GAGGCCGCCAGTACCGTCAGCACATGACCATCTTACGTACGTCCTACAGA
ACGCCTCACAGAGAAGCGGAGCCCCCCCCCCCCCAAAAAAAAATGGTCAC
TCCGCAGTGAAAGAGAAGAGAAAAAATGTTTCACTTTTTGTGCACGAATC
TGTTTTGCCGCCAGTCTACAACCTTCGGTACGTGTTTGACGTGACAGCAG
GATGTACGAAGGAGAGCGGTCACACAGGAGGAAGGTCGCACAGCATCCTT
TTTTTTTTTGCATGAGGTGACATACTCAATCTCTCAACCCCAGTGGTACA
GAGTGTGGCCGTATTTCAATGGCCCATATATTAGGAAAATTCCTACCCGG
GAGTGCTTTTTTTCAAGTCCAGTACAGCTAAATCGCGAAAAAATCTCTCC
GGCGGGGCGCCTCCAGCGGGGCCCTCCGGGGGCGGCGGGGCCCCCTTACC
AGCCGGGGGGGAGCGATGTTCGCGGCGCAACCGCGACCAGTGTACTGATA
GGACCCAGGACTCTGGCTGCCGCAGCAGCCATTTCACCAGGTACTTGCGC
CGCGCGAGCGCACAACCCTATCGCTTCTGCTCGTTCATGGCTGACCTCTA
CTAGTAAAGGGAAAAATTCCACGCTTGAGCTGCGATGTTAATCACGACAC
ACAACTATAACGCACTCGCCAAAAGCGGCCGAACCAAACCGCACGTAGGC
CTGTAATGCACAGCAGAATCCCCATGCAAATAAATACGAAGTACATACGA
AGTATATGTGTGTGCTGTGTTTCGTGAGCGTGGACCGGGCCGCAGACGCG
GCAGCTGCAGCTGCAGTTCCGACGCTCTAAGTACGGGCGAAAACCATCGA
CGATAAAAGAAATCGCTTCCAGGCCTCCAACATTATTTTATCTTAGTCTG
TGTATCAGCCTGGCGTTCAGAAATTATGGGATACATAGCAGCACGTTCAC
GCACAGACCGGCGACCTCTGCATTCGCCGTCGCGCGTGATATTTTATGGT
ACAAAAGATCAGGCAGGAGGTGCCTGCTCTGGCGACAGTTTCTCTAGTTT
GACGAAAAACTCAAGCCTGCAAGTCCTGTACAGGTACATGCAGCAGCGGG
TATCATCTACCTGCCGACAGCCAACTGCTACGTACGCGGCAGTCGAGAAT
GTTGAAATTAAAAGAAAGAAAACAATTTTTATCCTTCCACTGAAGTCCTC
CGCGGCTGCTAACCCGCATCCTGACATATATATATAATGTGGCGGGCGGG
TGGGTTGGTGTCTACGTGAATGCATGAGGCGAAGCGGTCAGAGCGGTCAA
ATTTCCAAAGCTGGCGGACCTCTGCTCCTGCCACCGCCGTGCAACGAGCA
AGCGGGGTTTCCGACTGCTGCACTGACATTCTTACGGTATTTCGAAAGAA
ACGTTGGTAAAAAAAAAAACTGTCGGCCGGGGGAAGGTGCGACTGCATGC
ACGCAAGAGCCTGTCGGCCGCGTCTCTCCTCGCGATCTACCCGCCCCCGT
GTTGAACGATTGTCTAAGAATAATTGCTCTCCATATGCGTGCAATAGTTG
TCATTTGTTCATGCCCACGTACGCGAAACAGGTGGCAAAGTCAAGCGCCG
AGTGGGCAGATAGCATGCAGAGCCTGGCGGAGTTCTCCACCGTTGAGGAT
TTTTGGAAGGTCTACAACAACGTCCCCAAGCCTAGCCAGGTGAGGCACCG
GCACGTTTACCCTTCCCCACTGCTGTGCGCGTCATGCGCTGTTGGCTCCA
TGGAAGAGGGAGTCCAAGGTGAGATTGAACCTGGAACGTTTCACTCTGAC
CCCAGCCCTCATCCTGAAATTTTGGTCGGAAGGCCGGTTACAACTGAAAC
CCGAGCCTTCCCAATTGGATTCTCGCCACTTGGCGGAGGTACGGCTGTGC
TCGTCGGGTCGTGGTTTACATCTGAGAATGTTACTGCAGGACAAGAGTGA
GACCTCATTTGTGCGTGTAGAACCACCGGAGGGACAACAACGGCTCCGGC
TTTCTTCACGTACGTACGACACGCCGACCGACCGTCCAGACACGCCTCCA
TTGCACCGAGCGCGGACGTGCGCGCGCAGCTTCCACCAGGAAAGGCAACT
GAAAATCTACACCTCCAAAGAGCGTTATCGTCCTGCGCTATCATACAGCA
GTACAGTAGCACAGATAAAAAGGAAGTTATCCCTGTCTCCTCACCCCCCC
CCTCGTCCGCCTACTGCCTCTGAAGGTCATGTTCGACGGCGCGACGCGCA
AGAAGGTCGGGAACCGCGTGATCGACTCGTACAGCATCTTCAAGAAGGGC
ATCAAGCCCGAGTGGGAATCTCCCCAGAACAGCCATGGGGGCGAGTGGCA
GAGCAGGAGCCGGATGACGCCTCAGGCGCTCGACCTGTTCTGGGTGAGAG
TGCCGCCAAGGCGATCGATGGCCCACGCCCCACCCTCGAAGGGGTTGGTC
GATGGTGTTGGTGGTGTTGTGTAATGTTGAAGATCCACTTTTCAGGTCGC
CGTCCACACAAAACGAAAATGATTATTTTTTTCCTCACAGTATGCGTTGC
CTGGGGCCGCCCACGCCCCCCTGCGGTGCGTGCCTTCAATTTACATAAAA
ACCAAGTTTGGCTTTGGCAACTCCTCAGTAGCGTATCGATGTGGGCAAAA
ACCTGTCGGATGCCCGAAAAGATCCCTATCATAGGGTAGCTGTTGGTGGC
TCTATACGTTGATGTCTGTTGGGTAATCTGGATCCATGGAGCCCACGAAC
CCCCCCCCGCCGTTCCCGTCCCACGTCCTCCCCCGGGCTACTACTACTAG
TTGGGCTTCGAACGAGAACCTCGCGTGATGGGCATGGCCGCTGAAACGAT
CGGCACTGGCCTGACGAAGTTCCCCCGACACGCCCGCACATTGCATACCC
CGCCCCCGACTTCCATACCATCCTCAATCCCGGCCTTCATACGCCAGCAA
TGATTTGGCCACGGCGTATTTTTCTTCCGAAGGTTTTTCTGATCTCCCGG
GGTCATGTTTTTCTACAGGGCTGAGAAGCGCATAATTACGTACCGGTACG
TGATACTCCGAAAATGCATGGCGCCTTCTGTCATGGATCACCCCTTAATT
TTGTTTTGTTGCACGTTTCTTCGTGGGCGTGTGCGTGTGTCTTTTTTGAT
CGTGGCAGGAGAACATGGTGCTGGGCTTGGTGGGGGAGACGGTTGACGTC
GGGGATGAGATCTGCGGGGCTCGGGTTGTTGACAAGAGCAAAAACAACCA
CAACGTCTACCGGTTCGAGCTGTGGCTCAGGAGTAACGACCAGAGCACGG
CGGCTAGGTGAGCACCAATCGCTTACTCTACGCCGACGCGGGCCGCTGGT
TGATGTTCTGACTCGACAACCGTTTTTTTGTTTTTGATCCCGGGAGGCGA
TTTGGTTTGAGTGTTGGGGTTATTCTACATTTTTGTGCGCTCGTGACAAT
ACCAACAGCATCTTAAGCCGGTATGGAGCTCCTTACGTTTTTGTTGAATG
CGACCGGTTAGCAACGGCCGCTGGCGTCGGTCGGCGTAGCACGTAATAAT
TTCTGGAGGGTGGGGCTCGAGAGCTCCTGAGGTCTGCTTCATCAGCGATA
GGGCGCCAATTGTTTGACCCGCTCTGGCTGTATAGAGCGGCCGTCACAGA
ATGAGTTGACGACGGCAGTGCAGAGCCTCCCGTCCGTTGGCTGACTTCGG
GGTGAATTGCAGAAGTTCTTGAGCGGCAGCACCGTCTCGTGATTGGACTG
GCTTTTTTTACTTCAATTATGAGATTGCCTCCAATCCCCACACATACTCG
TGGCTAGCTTGAGCATTTACCGCCGCCTTTTTGACTCGATGCGACGCCGC
GCGGCGTTTCGACAGGTCGCCTTCGATTTCCACAAAATCACGCAGGGGCC
AAGGAGCTGCGTGACAGCAGTTGTTTGTTTTGTGCTTTGATGTGTTGGTT
TTGAACCGGTGCCTCCCGCCAGATTATTATTTCGCATTGAGTGACCATTT
GTCCCCGAGAACGGTGACGAATTTCGAAGATTCGATAGCCAGCAAGCTTC
GCGCCTTCCTCGGGTGCGCTTTGCTCTCTATCTGATGCTTCTTCCGGCTC
CATCGGGCCAGAATTTCGCTCGATTACTGCTGCGCTGGATTTTGATCTAG
TACCCATTGCTCATACCTATCTATTTACACGCTTCTTTTTCATTGTTCGA
CGTGTGCCTTCCCCTACATGCACCGGTCCCCGATTCGTCGAAACCCCGTA
TAGGCTACTGGAGCGGCTGAAGATGTGCCTTAAAGACCGAAACTTGCACG
AGAAGTTCATGCCGAGCTTCGACTGGAAGTCGCACGGGGGGCGGTGATTC
CTTTAAATGCGGCGAAATGAGAAATGAAACGAGTATTATGTGGATTATGT
AGCGCGGTAAATGTTGCGTGCAACCGCGGCGCCCATGGTGGCGTCGGTTC
TTCCCCAAGACATGCGCGTTGACGGTTGTTTTTTGTGGCCAGCCTGCCTC
TAAACTTTGGTTGGCTCATGTCCTCTCCCCGAGGAGCAACAAAATGTGGC
ACCGAAGTAGGATACGCGTTGTCGACGGCTCTTATTTTTTCGGTCTCTTC
AAGTACCGGTTAAGCCCGTGATTGCCACCTTTATTCTTGCTGGGGAATCA
GTACAGTAGTATCGTTTCCGTTTTGTTGGCGTCCGAGGGGGTGTGCGGCA
GACATGTGAAAGACGGCGGTTGTGACCCAATTTTTTGTGTTTTCAAGTTT
GACCATGGGGTGCCTCTTCCCGGAAACGGCGAATGTGGAGACTGCTCTGG
TGATTCACGGGCAATTTTAATCGCTTATTATATGTGGATTTAGGTCAACT
TGCCTTCGCCCGCCTGCTCGCGCATGTATAGTGTGTTGGTGGCGTGCACT
TCTACTGCGATTTCAACCTAGGGTACAGGTAAAAGAGGAGCATGATTCAG
TACTGTAGATTGCTTGCGGATTTGTCTTGCGTCGCGTCTTTGTTGCGTTT
TTTTTTTTTTGGCGCTTGTTTTGTCGTTCTGTTGTTGGTTGTGCGATCAT
ACTGTACGCGTGTCAAACGTGTCAACAGTCGACAGCGTCGAAACTGCTGA
CGAGCAGTTTCTTCGGGCTTCAACTCGGTATTTTTACCTGATGATGATAT
CCTGTCAGGTTCTTCACAGCAGTCGTTTTGGGAGGAAGGACAAAAATGTT
GACGTTCCCCCGAACTTGAGTATCAAGTACTACGTGTGTGGATCATAGCC
GGCTGTTCCAACGGCCGGAGGCAGAGCCCGTCCGTCCCCGACGTATGGTT
TATTGTCGTGCACTGGCACCTGCTGTTGCTGCTTCCGACAGTTTGTTTGA
ACAATTTTTCGGTTTGGAGTCGGAGTCGGGGGTCACGTCCGGTGTTGGAT
ATCAAGATCGAATTCGAGGAAAAACCCATGAAATCGATCCCGCGATTGTT
TTAAGATGTTTTTCATACACAGAATACCCCCCCCCGACCCGTTTGTTTTC
CTGTCCCCCCTCCTTAATCGATGTCGATCTCGCGGTACGGCGGTATATCG
ACATCGAGATTGGCCGTGTCGCGACTTGAATCGAGATCGATCTCGCGATC
TGGCCGTATCGGTATCGGTATCGGACGTTTTCTCGAGTGCTGAAAATAAA
TCGATCATCGCATTTTTGTTTCGGCGATCGATCCAAAAAACTCTGTTTTC
TGGGGTCTCGATCCCCAACAAAGGTTAATACACGCAGCATCATGACGTTT
TGCACAACAAACATGGAAGAAAAGATAATCGGATGGATGTGAAATCGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig211:222369..230766+

>mRNA_P-littoralis_Contig211.72.1 ID=mRNA_P-littoralis_Contig211.72.1|Name=mRNA_P-littoralis_Contig211.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=585bp|location=Sequence derived from alignment at P-littoralis_Contig211:222369..230766+ (Pylaiella littoralis U1_48)
ATGTCGAACGGAAATGCAGAGCAGCTTCACCCTCTCCAGAACACGTGGTG
TATATGGGAACACAAGGTGGCAAAGTCAAGCGCCGAGTGGGCAGATAGCA
TGCAGAGCCTGGCGGAGTTCTCCACCGTTGAGGATTTTTGGAAGGTCTAC
AACAACGTCCCCAAGCCTAGCCAGGTCATGTTCGACGGCGCGACGCGCAA
GAAGGTCGGGAACCGCGTGATCGACTCGTACAGCATCTTCAAGAAGGGCA
TCAAGCCCGAGTGGGAATCTCCCCAGAACAGCCATGGGGGCGAGTGGCAG
AGCAGGAGCCGGATGACGCCTCAGGCGCTCGACCTGTTCTGGGAGAACAT
GGTGCTGGGCTTGGTGGGGGAGACGGTTGACGTCGGGGATGAGATCTGCG
GGGCTCGGGTTGTTGACAAGAGCAAAAACAACCACAACGTCTACCGGTTC
GAGCTGTGGCTCAGGAGTAACGACCAGAGCACGGCGGCTAGGCTACTGGA
GCGGCTGAAGATGTGCCTTAAAGACCGAAACTTGCACGAGAAGTTCATGC
CGAGCTTCGACTGGAAGTCGCACGGGGGGCGGTGA
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