mRNA_P-littoralis_Contig211.35.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig211.35.2
Unique NamemRNA_P-littoralis_Contig211.35.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig211.35.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig211contigP-littoralis_Contig211:92255..96398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1919
Hectar predicted targeting categoryother localisation
Exons4
Cds size1449
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig211.35.2prot_P-littoralis_Contig211.35.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig211 92569..96242 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790030.7118163-UTR-P-littoralis_Contig211:92254..925681680790030.7118163-UTR-P-littoralis_Contig211:92254..92568Pylaiella littoralis U1_48UTRP-littoralis_Contig211 92255..92568 +
1680790030.7626789-UTR-P-littoralis_Contig211:96242..963981680790030.7626789-UTR-P-littoralis_Contig211:96242..96398Pylaiella littoralis U1_48UTRP-littoralis_Contig211 96243..96398 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790030.7227445-CDS-P-littoralis_Contig211:92568..927761680790030.7227445-CDS-P-littoralis_Contig211:92568..92776Pylaiella littoralis U1_48CDSP-littoralis_Contig211 92569..92776 +
1680790030.731695-CDS-P-littoralis_Contig211:93491..935661680790030.731695-CDS-P-littoralis_Contig211:93491..93566Pylaiella littoralis U1_48CDSP-littoralis_Contig211 93492..93566 +
1680790030.743723-CDS-P-littoralis_Contig211:94330..944581680790030.743723-CDS-P-littoralis_Contig211:94330..94458Pylaiella littoralis U1_48CDSP-littoralis_Contig211 94331..94458 +
1680790030.752779-CDS-P-littoralis_Contig211:95204..962421680790030.752779-CDS-P-littoralis_Contig211:95204..96242Pylaiella littoralis U1_48CDSP-littoralis_Contig211 95205..96242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig211.35.2

>prot_P-littoralis_Contig211.35.2 ID=prot_P-littoralis_Contig211.35.2|Name=mRNA_P-littoralis_Contig211.35.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=483bp
MMYHNTQKKCISDRALALLYNSTHAWALLLRSRNSVTRGCLYGEDSGACP
VTDGGPEEGCWPLHRDDDEGGKDVGLPCVWIRCWVSTNALKDEAAIVKHH
FLLVVHRIPEWVRSKCSTLLGPAFSSDYAGDGPTSPLPQSHPDAQAQRSA
GHGGGSNTVVGVTSESERGAALEADEVARQSRSSAQEMGVDESISSLSGG
QGVVMGGGSFAMGSRSISQVPARRTRRGNQASFRDADRRRSAPPSAGGTV
PASAQTPSSSQEGEAARCGRKRRSEGDAHPKASQKVSKRGPKPSCGIKAC
GETGDWSNPCQSCESVSHAGQYLCFACHRPTKMSSGKAIWRHFQETDLNE
VDSWWPQVHLDVRAPLRGDYTPSKHCVCSHRDCVAAAYDRYRQNAGSSAC
NRCETCGTRTTPHWRTAGIRYGYMHTFFASGKGATHRRDYLRVNGGELSM
ESNICNACWLFFRDNGGSVKTTAAAYASYVES*
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mRNA from alignment at P-littoralis_Contig211:92255..96398+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig211.35.2 ID=mRNA_P-littoralis_Contig211.35.2|Name=mRNA_P-littoralis_Contig211.35.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4144bp|location=Sequence derived from alignment at P-littoralis_Contig211:92255..96398+ (Pylaiella littoralis U1_48)
CCTCACCTGTTTCGGGGATGTTTAAAAACCGCCTACACATCTCATGAAGA
ACAATATCAGGCATACTCAGGGTGTCATGATTTGGCACCCGCTGTTGTTT
CTCGGGTCAACTTCACTGGGTTCAGAGCGCCAGAGCAGGAGCTGTGGTCC
TTCATCTGAAGTAGAAATTGGCAGAGGTGTTGAGTCGACACCTTGAGGGA
CTCGAACTACACCGTGGGTGGTGCAACCGGTTCTGTTAGGATTTCGCGAA
GTGTATATGTGGATCGGTGCTGGCTGCTGGTGGAACTTAGGGCAACAACT
GAGTGCAGTGTGGGATGATGTATCATAATACACAGAAGAAGTGCATATCC
GACCGAGCACTTGCACTGCTGTACAACTCAACACATGCATGGGCACTACT
GCTGAGGTCGCGCAATAGTGTAACGAGAGGCTGTCTATACGGGGAAGATT
CTGGTGCCTGCCCAGTTACAGACGGAGGTCCAGAGGAAGGCTGCTGGCCG
CTTCACCGCGATGACGATGAAGGTGTGTTGTGTTGTGGTGTGCTGTGTTG
GCTGTTTGCTATGTTTGATGTTGTCATCCGGTACCCCTGCTGCTTGTGTG
CGTGTGCCGTGCTGTGCTCGTCACCCGGGGCAGGGCAATGAACTGCCTTG
CTCGATTGCTGTGTAGATTTGCACAGCGTCACGAAGGGCTATAGCAAGGA
TGGCCTTTTATTTTACTGTATAGGTATCTTGTTGTCCAGCAGGACGTGTT
TGATAAATCTCTCCGCACCAACACATGAACCTTTGTATGTAGAACAGCAG
ACAGCTGTTTTCATATTCTACACAGCAGTACCGTATTCTACACAAGATAC
CACACCCCGTGTTAAGATTTTTGCATTCCGTATAGCTCCACAACCAGGAG
GGTGCCACTGCCGAAAAGGGTGGTTTTGGAAAGATCTCGTCGAGAGCTTT
CGTATGACGGGCTGTTTGGTGTTCGCACCCTCCTGGTTGTGGAGCAATAC
GGAATGCAAAAAACCTAACACGGGGTGTGGTATCTTGTGTAGAATACGGT
ATATTAGTGCTGTACCAGCACCCACCTGTGTATGGCCCGTACAGCAGTAC
TACTCTACTACATATATTTGTCGAAACATGCACGTGCAAATCATCGTCCT
TGGTGATGTACGAGTATTCACCCAAATTCGAAGAAAGGAAGAAATACTGA
ATGAGCGTCAATCTGTATGCTGAATGAATGTTGGCAGGTGGAAAGGATGT
TGGTCTGCCGTGTGTTTGGATCCGGTGCTGGGTGTCTACAAACGCGTTGA
AGGACGAAGCAGGTGAGATGGATGGGTTCAAACCGTTGTTGCCCGATGCT
CCGGGCCGGGCCGGATTGTGGGAATATCGTGCCCTGTTGTCGTATTCTTG
CGGCCATGATCGATGTTCACGGAGTCTTTCCCTCGTCAGATATGTCGCTA
TGCATATTATCGTTACGTTGTGTTATGGTTCATGGCCGTTACACCGAAGG
GGTTCCATTTGAAGGAAGCCTTCGGGGTACTGCAGAGGGTACCAGCGTAT
CGACTGAAGTCTATTCGCTGAGCCCCCCGTCCAACGAGCCACTTCAGCCC
TTCCTTCTCACCCTCCGAGTTGCCCGCTGAACAGCACAACTCTAGCCACA
TCCTTTCCGTCTAAGAACGACACAGCTATACCATCAGCTTCCGAGCTTCT
TCCTTCATCGCGTACGTAAGCTCCTCGATCTCGGTGACCAGCCAGTCGAC
ATGTCTTACTACGGACCCCAAGGTCAGATACCCTGCTTTTGCATGTGTAA
ACCTGGGGCATAATGAGACTCTGTCACGCATGTTCCGGCCTTTAGCTCTG
CATGGCAGCGGCATGTAACAGAGTACTCTATGAGTTGGTGTTTGCGTTCC
AGAACGAGGCAGAACAGAGACTCGCTGCCTCGCTCGACATATATACCCAC
TGGCTGCTCATAACAGTTGCTCAGTTGACTTACTTTATATACCTGGTACG
TGTTTTTCAGCCGTTTATGCGGAGCACTTTTGGATCAACATTGCTGTTAC
TTTGTCCTGCCCCCCGCTGCGAACAGCAATCGTGAAGCATCATTTTCTCC
TGGTGGTGCATCGGATACCGGAGTGGGTGCGATCTAAGTGTAGCACGCTG
CTCGGCCCAGCGTTCTCGTCGGATTACGCCGGAGACGGACCAACATCGCC
CTTGGTGAGGTGCATGGATGTATTGTTTGTAAGGATCGTTTGAAACATTC
CGAAAAAAAATGTTGCAATTCACGACAAAATACAACCAGCGACAGGCAGA
GGGCAGGTAGATGAAGAGGGTATTTATTTCTTGTTTGGGGGAAGATACTG
ACAACGTGTATTCGATTTGGTGTCGTGACGATACGCGCGTCGCGCTTGCC
GCTCCACAGCCCAAAACCTTGGCCATGCCCGGCAGATCATAGGCACATGT
CCGTGCTCCTCCAGTTGGCAGAGCTTTACGTCGTTTGTTCAGCGATTTCT
GCGCGAAAACGTGAACCGCTCTCCTGCGGTGGAAACGTCAATGGATATTG
TTTTGTACGGCAGCATCAGTAGGAGCGTGTTGCAAGTTAACATATCTTGT
CCAGGTGCATACAAGAAGTGACGCCCTCAAACCTTAGCCATATTCGATGG
ACGATACACCTATGTCTCTGGGGGGGCAATTTACTCCGAGTCTACTCCTC
TTTTCCGCGAGGTATCGTTGATCGTGTCAAAGTGAATGCTGTTGGGTGAT
GTGATGAACAAACTAAGACGGACGAGGAGAAGAAACATAACAAAATCAAT
AAATAAATAATTAGATGAAACGATTTTTTTTGTGCCCCTTGGTTAAGATG
CCCTGAACACGTGTATAAAATTTTGACAACCCTAACCCTCTTCAGGTGTC
TTACTGATGCCCCGCTATCATTTTTTTTTTTAATTATCCTCTGCATGCAG
CCGCAGTCACACCCTGATGCACAAGCGCAACGGTCGGCCGGGCATGGAGG
TGGCAGTAACACGGTCGTAGGGGTCACTTCTGAGAGTGAAAGGGGGGCGG
CGCTTGAGGCAGACGAGGTAGCGAGACAGTCACGCTCATCAGCGCAGGAG
ATGGGCGTGGACGAAAGCATTTCATCGCTCTCGGGGGGTCAAGGTGTAGT
GATGGGCGGAGGATCGTTTGCGATGGGTTCGAGGTCGATATCCCAAGTAC
CAGCCCGAAGAACAAGGAGAGGGAATCAAGCTTCGTTTCGAGATGCCGAT
CGTAGACGTAGCGCACCACCGTCTGCAGGAGGGACGGTTCCGGCTTCAGC
ACAGACGCCTTCATCGTCACAGGAAGGGGAGGCAGCGAGGTGTGGTCGCA
AGCGGCGAAGCGAAGGTGATGCCCACCCTAAGGCATCGCAGAAAGTATCC
AAAAGGGGGCCCAAACCATCTTGTGGTATCAAGGCATGCGGTGAAACGGG
TGATTGGAGCAATCCCTGTCAGAGTTGTGAAAGCGTGTCCCACGCTGGAC
AGTACCTCTGCTTCGCGTGCCACCGTCCGACGAAGATGAGCAGCGGGAAA
GCAATATGGCGACACTTCCAAGAAACTGATCTGAATGAAGTGGACTCGTG
GTGGCCCCAAGTACACCTCGATGTCCGGGCTCCACTCCGTGGCGACTATA
CGCCGAGCAAGCATTGCGTGTGCTCCCACAGGGACTGCGTAGCGGCGGCG
TACGACCGTTACAGGCAAAACGCCGGCAGTAGCGCGTGCAACAGGTGCGA
GACTTGTGGCACTCGTACCACCCCCCATTGGCGCACGGCGGGAATCAGAT
ACGGCTACATGCATACTTTCTTCGCTAGCGGCAAAGGCGCCACTCACAGG
CGAGATTACCTGCGGGTGAACGGGGGGGAGCTCTCCATGGAGAGCAACAT
CTGCAACGCATGCTGGCTGTTCTTCAGGGACAACGGCGGATCGGTGAAGA
CCACTGCTGCTGCGTACGCGAGCTACGTGGAAAGTTGACACGAAAGCCTC
TTTCTGTCAGCAGCCGACACACGGCATCTCTCGTGCTCCCGCAGCAGTCA
AGAACAAGACCACCGACGTCCAAGTGGGCCATCATGTCGTTCACCTGTCC
CAAGGCATGCCGATATTCGTTTCAGTATCATTTCGAAATTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig211:92255..96398+

>mRNA_P-littoralis_Contig211.35.2 ID=mRNA_P-littoralis_Contig211.35.2|Name=mRNA_P-littoralis_Contig211.35.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1449bp|location=Sequence derived from alignment at P-littoralis_Contig211:92255..96398+ (Pylaiella littoralis U1_48)
ATGATGTATCATAATACACAGAAGAAGTGCATATCCGACCGAGCACTTGC
ACTGCTGTACAACTCAACACATGCATGGGCACTACTGCTGAGGTCGCGCA
ATAGTGTAACGAGAGGCTGTCTATACGGGGAAGATTCTGGTGCCTGCCCA
GTTACAGACGGAGGTCCAGAGGAAGGCTGCTGGCCGCTTCACCGCGATGA
CGATGAAGGTGGAAAGGATGTTGGTCTGCCGTGTGTTTGGATCCGGTGCT
GGGTGTCTACAAACGCGTTGAAGGACGAAGCAGCAATCGTGAAGCATCAT
TTTCTCCTGGTGGTGCATCGGATACCGGAGTGGGTGCGATCTAAGTGTAG
CACGCTGCTCGGCCCAGCGTTCTCGTCGGATTACGCCGGAGACGGACCAA
CATCGCCCTTGCCGCAGTCACACCCTGATGCACAAGCGCAACGGTCGGCC
GGGCATGGAGGTGGCAGTAACACGGTCGTAGGGGTCACTTCTGAGAGTGA
AAGGGGGGCGGCGCTTGAGGCAGACGAGGTAGCGAGACAGTCACGCTCAT
CAGCGCAGGAGATGGGCGTGGACGAAAGCATTTCATCGCTCTCGGGGGGT
CAAGGTGTAGTGATGGGCGGAGGATCGTTTGCGATGGGTTCGAGGTCGAT
ATCCCAAGTACCAGCCCGAAGAACAAGGAGAGGGAATCAAGCTTCGTTTC
GAGATGCCGATCGTAGACGTAGCGCACCACCGTCTGCAGGAGGGACGGTT
CCGGCTTCAGCACAGACGCCTTCATCGTCACAGGAAGGGGAGGCAGCGAG
GTGTGGTCGCAAGCGGCGAAGCGAAGGTGATGCCCACCCTAAGGCATCGC
AGAAAGTATCCAAAAGGGGGCCCAAACCATCTTGTGGTATCAAGGCATGC
GGTGAAACGGGTGATTGGAGCAATCCCTGTCAGAGTTGTGAAAGCGTGTC
CCACGCTGGACAGTACCTCTGCTTCGCGTGCCACCGTCCGACGAAGATGA
GCAGCGGGAAAGCAATATGGCGACACTTCCAAGAAACTGATCTGAATGAA
GTGGACTCGTGGTGGCCCCAAGTACACCTCGATGTCCGGGCTCCACTCCG
TGGCGACTATACGCCGAGCAAGCATTGCGTGTGCTCCCACAGGGACTGCG
TAGCGGCGGCGTACGACCGTTACAGGCAAAACGCCGGCAGTAGCGCGTGC
AACAGGTGCGAGACTTGTGGCACTCGTACCACCCCCCATTGGCGCACGGC
GGGAATCAGATACGGCTACATGCATACTTTCTTCGCTAGCGGCAAAGGCG
CCACTCACAGGCGAGATTACCTGCGGGTGAACGGGGGGGAGCTCTCCATG
GAGAGCAACATCTGCAACGCATGCTGGCTGTTCTTCAGGGACAACGGCGG
ATCGGTGAAGACCACTGCTGCTGCGTACGCGAGCTACGTGGAAAGTTGA
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