mRNA_P-littoralis_Contig21.168.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.168.7
Unique NamemRNA_P-littoralis_Contig21.168.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: A0A6H5LB75_9PHAE (Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB75_9PHAE)

HSP 1 Score: 781 bits (2017), Expect = 3.050e-266
Identity = 458/782 (58.57%), Postives = 517/782 (66.11%), Query Frame = 2 
Query:  377 RAPKPTKKILICGKEVTLKDTGGRKKRKQPMEALVILAYKGH----------------------KGIKQDLSTHLMVLSLCGGSPGEKDELDPGNGSTRNGSTRPHHAATLARAAADDAAALAKPTEGEVGNASAQENTHAAAEAALQIFSDASNGGAVSLPESAYTAVIRACCLDGRADRGREFLEALKRADVRPRVRTYAPLLEAYSGLDGRLQDCMDIWHDAVAVPEEGRPGITMTEREYLHLVAACTRAKDEKCFLEVMEEYMDDVLQPRSRHSWDVLKAWFKVAPNDIGNGVTEQVKPAAAAQE---------------EKPEASGNGDPGGGKDGAVEPGTSSTAVATEAEDTAAAQAAGVVEAEQGTVSTXXXXXXXGVPAASEATSSTPAPSDAPEQDTSVSSSXXSPSKAVIPKTPGAAEDRDDIAAAADGDDSMGLEKKSPRGDDKVDADSSPMETETEEXXXXXXXXCCGGDGDAIGMAKDLPSDEGVC---------AAEGADADVDADAALKESPSGSDGSWIVTECKVDEDGTCNNCGEVLKSIDLSPDDERRLLEQINVMVCTNEQRTKQWEGFRGWLDRRGKERYNVIIDGANVGYYKQAALSNSELADLEQVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGVIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEG---DMRELIADEPRTYSKRTQKGVDSWHVPLEGSGDWLCARWR 2575
            + P    KI ICGKE+TL+ TGGRKKRK PME L++LAYK                        KGIKQDLSTH+MVLSLCGGSPG++DELDPGNGST        HAA++ R AA    A+AK   G V  ASAQ+NT AAAEAALQIFSDAS GG VSLPESAYTAVIRACC DGRADR RE LEALK+A ++PRVRTY PLLEAYS LDGRL+DCM +W +AV+ P   + GITMTEREYLHL+AACTRA+DEKCFLEVM EYMDDVLQPRSRHSWDVLK+WFKV PN IGNG  +  + AAA                  E P+  G  +  GG+ G     TS  A A       AA A GV ++                P+ S+A  +T  PS  P+      S       A+ P +          A  + GDD+ G    SPR         S                 CGGD DA+  A     DE V          A E A    DA    KE PSG    WIVTEC V +DGTC NCGEV++SI+LS DDE+RLL+QI  +VCTNEQRT QWEGFRGWL+RRGK+RYNVIIDGANVGYYK A LS  ELADL QVDWAV+K++ EGKKPLVVLHSRHLVE RLSDEA EIYKRWKE  +IQSCAPKNNDDWYWLYAAVYTGG+VLVLTNDEMRDHHFSMLSHRSFQRW+ERHQ RF FG+W  EG   D RE+I +EPR+YSKRTQKGVDSWHVPLE S DWLCARW+
Sbjct:  103 KPPTTAGKITICGKEITLQHTGGRKKRKHPMETLILLAYKEELTLKCKANNMISALEIHQEMKSKGIKQDLSTHMMVLSLCGGSPGDRDELDPGNGSTGG------HAASVERTAA----AVAK---GRVEGASAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQAGLKPRVRTYTPLLEAYSKLDGRLEDCMALWREAVSPPGGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKSWFKVGPNVIGNGYVKHREVAAATTARTKPEEGEIENPRSGELPDNGGISEGDGGESGQESTATSGAAAAAPTLAGDAAGAPGVGDS---------------APSLSKAVVATEPPSARPDGSHGTDS-------ALAPASSSXXXXXXXQADGSSGDDATGAAATSPRAAGAYAVGRS------------FQADGCGGD-DAMEDAPQADGDEAVGGPTPVAGEDAVEEASPRADAAGGEKEPPSGGTSGWIVTECYVRKDGTCENCGEVMRSIELSEDDEQRLLKQIEELVCTNEQRTHQWEGFRGWLERRGKQRYNVIIDGANVGYYK-ACLSEGELADLRQVDWAVKKFQDEGKKPLVVLHSRHLVEKRLSDEAKEIYKRWKEADMIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKGEGGDDDEREVITEEPRSYSKRTQKGVDSWHVPLERSRDWLCARWQ 835
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: D7FNK6_ECTSI (PPR_long domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK6_ECTSI)

HSP 1 Score: 373 bits (958), Expect = 2.070e-113
Identity = 261/548 (47.63%), Postives = 300/548 (54.74%), Query Frame = 2 
Query:  377 RAPKPTKKILICGKEVTLKDTGGRKKRKQPMEALVILAYKGH----------------------KGIKQDLSTHLMVLSLCGGSPGEKDELDPGNGSTRNGSTRPHHAATLARAAADDAAALAKPTEGEVGNASAQENTHAAAEAALQIFSDASNGGAVSLPESAYTAVIRACCLDGRADRGREFLEALKRADVRPRVRTYAPLLEAYSGLDGRLQDCMDIWHDAVAVPEEGRPGITMTEREYLHLVAACTRAKDEKCFLEVMEEYMDDVLQPRSRHSWDVLKAWFKVAPNDIGNGVTEQVKPAAAAQEEKPEASGNGDPGGGKDGAVEPGTSSTAVATEAEDTAAAQAAGVVEAEQGTVSTXXXXXXXGVPAASEATSSTPAPSDAPEQDTSVSSSXXSPSKAVIPKTPGAAEDRDDIAAAADGDDSMGLEKKSPRGDDKVDADSSPMETETEEXXXXXXXXCCGGDGDAIGMAKDLPSDEGVCAAEGADADVDADAALKESPSGSDGSWIVTECKVDEDGTCNNCGEVLKSIDLSPDDERRLLEQI 1954
            + P    KI ICGKE+TL+ TGGRKKRK PME L++LAYK                        KGIKQDLSTH+MVLSLCGGSPG++DELDPGNG T        HAA++ R AA    A+AK   G V  ASAQ+NT AAAEAALQIFSDAS GG VSLPESAYTAVIRACC DGRADR RE LEALK+AD++PRVRTY PLLEAYS LDGRL+DCM +W +AV+ P   + GITMTEREYLHL+AACTRA+DEKCFLEVM EYMDDVLQPRSRHSWDVLKAWFK                               D GGG D        +T  AT +   A A A G   + Q     XXX    G P                                                  ADGD+++G              D  P+  +   XXXXXXX   GG+                                K+ PSG  GSWIV EC V +DGTC NCGEV++SI+LS DDE+RLL+Q+
Sbjct:  102 KPPTTAGKITICGKEITLQHTGGRKKRKHPMETLILLAYKDELTLKCKANNMVSALEIHQEMKSKGIKQDLSTHMMVLSLCGGSPGDRDELDPGNGLTGG------HAASVERTAA----AVAK---GRVEGASAQDNTFAAAEAALQIFSDASKGGTVSLPESAYTAVIRACCRDGRADRAREALEALKQADLKPRVRTYTPLLEAYSKLDGRLEDCMTLWREAVSPPAGLQQGITMTEREYLHLIAACTRARDEKCFLEVMTEYMDDVLQPRSRHSWDVLKAWFKA------------------------------DGGGGDD--------ATGAATTSPRAAGADAVG--RSSQXXXXXXXXDVMEGAP-------------------------------------------------QADGDEAVG--------------DPPPVAGKDAXXXXXXXXDAAGGE--------------------------------KKPPSGGAGSWIVRECYVRKDGTCENCGEVMRSIELSEDDEQRLLKQV 501
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: D7FNK8_ECTSI (PRORP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNK8_ECTSI)

HSP 1 Score: 200 bits (508), Expect = 3.130e-56
Identity = 91/110 (82.73%), Postives = 99/110 (90.00%), Query Frame = 2 
Query: 2255 VIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEG---DMRELIADEPRTYSKRTQKGVDSWHVPLEGSGDWLCARWR 2575
            +IQSCAPKNNDDWYWLYAAVYTGG+VLVLTNDEMRDHHFSMLSHRSFQRW+ERHQ RF FG+W  EG   D RE+I +EPR+YSKRTQKGVDSWHVPLE S DWLCARW+
Sbjct:    1 MIQSCAPKNNDDWYWLYAAVYTGGSVLVLTNDEMRDHHFSMLSHRSFQRWKERHQARFYFGDWKGEGGDDDAREVITEEPRSYSKRTQKGVDSWHVPLERSRDWLCARWQ 110
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: A0A1V9ZIW2_9STRA (Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZIW2_9STRA)

HSP 1 Score: 204 bits (520), Expect = 2.330e-53
Identity = 101/246 (41.06%), Postives = 144/246 (58.54%), Query Frame = 2 
Query: 1829 SDGSWIVTECKVDEDGTCNNCGEVLKSIDLSPDDERRLLEQINVMVCTNEQRTKQWEGFRGWLDRRGKERYNVIIDGANVGYYKQAALSNSELADLEQVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGVIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEGDMRELIADEPRTYSKRTQKGVDSWHVPLEGSGDWLCA 2566
            SDG W V    VDE G C+  G  L+S++LS   +  L+ ++  +VCT+++RT+QW  F+ WLD  G   ++VI+D AN+GY+ Q            Q+   +  Y+  GKK L+VLH R   + ++ ++   + + W+++GV+ +C P NNDDWYWLYAAV  GG  LV++NDEMRDHHF M+ +  F RW+ERH   +       + D    I DEPR YSKR+Q    SWH P      WL A
Sbjct:  231 SDG-WTVETGTVDESGVCSVTGSTLESVELSEAKQAALMTKVEGLVCTSDERTEQWAAFKEWLDTNGP--FDVILDAANIGYFSQNYEGGG--FSYRQIQRVLSAYQARGKKVLIVLHKRRTSDRQVPEDLRPLVQAWRDDGVMYNCLPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNVDFHRWKERHLVHY-------DKDAGRFIFDEPRVYSKRSQHLAKSWHFPTPDKETWLVA 464
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: K3WUG8_GLOUD (Ribonuclease P n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WUG8_GLOUD)

HSP 1 Score: 202 bits (515), Expect = 1.400e-52
Identity = 101/241 (41.91%), Postives = 143/241 (59.34%), Query Frame = 2 
Query: 1841 WIVTECKVDEDGTCNNCGEVLKSIDLSPDDERRLLEQINVMVCTNEQRTKQWEGFRGWLDRRGKERYNVIIDGANVGYYKQAALSNSELADLEQVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGVIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEGDMRELIADEPRTYSKRTQKGVDSWHVPLEGSGDWLC 2563
            W  +   VD+ G C+  G+ L+SI+L P  E +LLE+I  +V T+E+RT QWE F+ WL   G   ++V+ID ANVGY+ Q         D +Q++  +  YE++ K+ L+VLH R  ++ ++  E   +  +W E  ++ +C P NNDDWYWLYAAV  GG  L +TNDEMRDHHF M+  R+F RW+ERHQT +  G          L   EP  +S R Q+   +WH P   S +WLC
Sbjct:  247 WTCSVGSVDDKGVCSVTGDQLQSIELPPALETKLLEKIESLVTTDERRTAQWEAFKTWLSEHGP--FDVVIDAANVGYFNQNYDGGG--FDYKQIETLLTHYEQQDKRVLIVLHKRRTMDEQVPAEHRAMVAQWAERRIMFNCLPGNNDDWYWLYAAVRLGGRTLAVTNDEMRDHHFQMIHDRAFARWKERHQTHYEVGA--------RLRLHEPTPFSVRPQRIGGNWHFPCTDSSEWLC 475
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: A0A7S2SKI7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SKI7_9STRA)

HSP 1 Score: 198 bits (503), Expect = 2.210e-52
Identity = 98/219 (44.75%), Postives = 138/219 (63.01%), Query Frame = 2 
Query: 1901 LKSIDLSPDDERRLLEQINVMVCTNEQRTKQWEGFRGWLDRRGKERYNVIIDGANVGYYKQAALSNSELADLEQVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGVIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEGDMRELIADEPRTYSKRTQKGVD-------SWHVP 2536
            L+SIDL  ++ +R+LEQ++ +  T +    +W GF GWL+R+G+  ++V++DGANVGY+KQ      +  + EQ+D  VR ++ +GK+ L+ LH RHL    L     ++ KRWK E  + +    +NDDW+WLYAAV+    V V+TNDEMRDHHF MLSHRSFQRW+ERHQ  + FG ++     R +I   P TYS R Q   D       +WHVP
Sbjct:   82 LRSIDLGGEERQRMLEQVSELALTGKDGAAKWAGFTGWLERKGRTAFDVLVDGANVGYFKQNYPGAPKHVNYEQIDCVVRHFQAQGKRVLLFLHQRHLFPQNLPASCVDLTKRWKSEKTLFTTPVGSNDDWFWLYAAVWLEN-VQVVTNDEMRDHHFRMLSHRSFQRWKERHQIHYEFGGFDSSLRGRRVITHVPPTYSIRMQASTDPTSGEVTAWHVP 299
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: A0A1V9YXD0_9STRA (Ribonuclease P n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXD0_9STRA)

HSP 1 Score: 201 bits (510), Expect = 4.070e-52
Identity = 101/248 (40.73%), Postives = 146/248 (58.87%), Query Frame = 2 
Query: 1841 WIVTE---CK---VDEDGTCNNCGEVLKSIDLSPDDERRLLEQINVMVCTNEQRTKQWEGFRGWLDRRGKERYNVIIDGANVGYYKQAALSNSELADLEQVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGVIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEGDMRELIADEPRTYSKRTQKGVDSWHVPLEGSGDWLCA 2566
            W ++E   CK   V+EDG C+  G  L SI+LS + E  LL+++  +VCT+++RT+QW  F+ W+D  G   Y+V++D AN+GY+ Q         + +Q+   ++ Y++ GKK L+VLH R   +  + +    +   W+++  + +C P NNDDWYWLYAAV   G  LV++NDEMRDHHF M+S   F RW+ERH  R+     N        + DEPR YSKR+Q   DSWH P      WL A
Sbjct:  223 WFMSEGFTCKEGTVNEDGICSVTGAKLLSIELSKEKEDILLKKVEGLVCTSDERTEQWNEFKSWIDENGP--YDVLLDAANIGYFNQNYEGGG--FNYKQIQRVLQAYQRRGKKVLIVLHKRRTSDKEVPEHLRSMVAGWRDKNEMYNCRPGNNDDWYWLYAAVNFSGRTLVVSNDEMRDHHFQMISGVDFHRWKERHLVRYDKKNGN-------FVFDEPRVYSKRSQHVNDSWHFPTPDKDKWLVA 459
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: A0A067CVR5_SAPPC (Ribonuclease P n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CVR5_SAPPC)

HSP 1 Score: 199 bits (507), Expect = 1.110e-51
Identity = 100/237 (42.19%), Postives = 143/237 (60.34%), Query Frame = 2 
Query: 1862 VDEDGTCNNCGEVLKSIDLSPDDERRLLEQINVMVCTNEQRTKQWEGFRGWLDRRGKERYNVIIDGANVGYYKQAALSNSELADLE--QVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGVIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEGDMRELIADEPRTYSKRTQKGVDSWHVPLEGSGDWLCA 2566
            VD  G C+  G  L+SI+LS + +  L+ ++  +VCTN++RT+QW  F+ WLD  G   ++V++D AN+GY+ Q    N E    +  Q+   ++ Y+  GKK L+VLH R   +  + DE   + + WK++GV+ +C P NNDDWYWLYAAV  GG  LV++NDEMRDHHFSM+++  FQRW+ERH   +       +    +   DEP  YSKR+Q    SWH P      WL A
Sbjct:  237 VDASGVCSITGAQLQSIELSDEKQAALMAKVEGLVCTNDERTEQWTAFKEWLDAHGP--FDVLLDAANIGYFSQ----NFEGGGFKYTQIQRVLQAYQARGKKVLIVLHKRRTKDREVPDELRPMVQSWKDDGVMFNCRPGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFSMIANVDFQRWKERHLVHY-------DKVNGKFTFDEPSVYSKRSQALAHSWHFPTPNKDAWLVA 460
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: A0A024UCX6_9STRA (Ribonuclease P n=3 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UCX6_9STRA)

HSP 1 Score: 199 bits (505), Expect = 2.930e-51
Identity = 99/248 (39.92%), Postives = 145/248 (58.47%), Query Frame = 2 
Query: 1841 WIVTECKVDEDGTCNNCGEVLKSIDLSPDDERRLLEQINVMVCTNEQRTKQWEGFRGWLDRRGKERYNVIIDGANVGYYKQAALSNSELADLE--QVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGVIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEGDMRELIADEPRTYSKRTQKGVDSWHVPLEGSGDWLCARWRR 2578
            W+    +V++ G C+  G  L+S++LS + ++ LL ++  +VCT+++R  QW  F+ WLD  G   ++VIID ANVGY+ Q    N E       Q+   V+ Y+ +G  PL+VLH R   +N++  +   + ++WK+E  + +C   NNDDWYWLYAAV  GG  LV++NDEMRDHHF M+ ++ F RW+ERH   +     N       ++  EP  YSKR+Q    SWH P   S DWL    RR
Sbjct:  243 WLCNVGEVNKAGICSVTGSTLQSVELSAEKQQALLTKVENLVCTSDERVAQWAAFKAWLDEHGP--FDVIIDAANVGYFNQ----NFEGGGFNYGQIQTVVQAYQSKGLTPLIVLHKRRTKDNQVPAQHRAMVQQWKDEKTMFNCEYGNNDDWYWLYAAVKLGGRTLVVSNDEMRDHHFQMIHNQDFHRWKERHLVHYEVRGHN-------VVLHEPSVYSKRSQHLASSWHFPTTSSSDWLVFHRRR 477
[Close]
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Match: A0A7S2BW17_9STRA (Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BW17_9STRA)

HSP 1 Score: 201 bits (510), Expect = 1.460e-50
Identity = 109/244 (44.67%), Postives = 147/244 (60.25%), Query Frame = 2 
Query: 1841 WIVT-ECKVD-EDGTCNNCGEVLKSIDLSPDDERRLLEQINVMV-CTNEQRTKQWEGFRGWLDRRGKER-------YNVIIDGANVGYYKQAALSNSELADLEQVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGVIQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWRERHQTRFSFGEWNEEGDMRELIADEPRTYSKRTQKGVD--SWHVP 2536
            WI T +  +D + G C  CG  L+SIDLS +  +R+LEQ+  +     E+  K W+ F  WL RR  ++        +VIIDGANVGYYKQ      +  D EQ+D  +R +E  GK+ ++ LH RHL E  L  +   I +RW+E+ V+ +    +NDDWYWLYAA++ GG+V ++TNDEMRDHHF MLSHR FQRW+ERHQ  F F      G  RE++   P  YS R Q+     +WHVP
Sbjct:  335 WIATMDAPMDLKQGVCGACGTKLRSIDLSEEHRQRMLEQVAGLARAGGEKSCKAWKCFTDWLSRRRDKQAANQVTGMDVIIDGANVGYYKQNFAGAPKHVDYEQIDQIIRHFEAAGKQVMLFLHKRHLFEQNLPAKYRHIVERWREQKVMYNTPVGSNDDWYWLYAALWLGGSVQLVTNDEMRDHHFQMLSHRDFQRWKERHQVHFEFSREGIRGH-REVVTYAPPAYSVRMQEDSKGKAWHVP 577
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.168.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5LB75_9PHAE3.050e-26658.57Ribonuclease P n=1 Tax=Ectocarpus sp. CCAP 1310/34... [more]
D7FNK6_ECTSI2.070e-11347.63PPR_long domain-containing protein n=1 Tax=Ectocar... [more]
D7FNK8_ECTSI3.130e-5682.73PRORP domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A1V9ZIW2_9STRA2.330e-5341.06Ribonuclease P n=1 Tax=Achlya hypogyna TaxID=12027... [more]
K3WUG8_GLOUD1.400e-5241.91Ribonuclease P n=1 Tax=Globisporangium ultimum (st... [more]
A0A7S2SKI7_9STRA2.210e-5244.75Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A1V9YXD0_9STRA4.070e-5240.73Ribonuclease P n=1 Tax=Thraustotheca clavata TaxID... [more]
A0A067CVR5_SAPPC1.110e-5142.19Ribonuclease P n=2 Tax=Saprolegnia TaxID=4769 RepI... [more]
A0A024UCX6_9STRA2.930e-5139.92Ribonuclease P n=3 Tax=Aphanomyces invadans TaxID=... [more]
A0A7S2BW17_9STRA1.460e-5044.67Ribonuclease P n=1 Tax=Dictyocha speculum TaxID=35... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:629026..640798 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog65071.PYU1_T008615
PFAMsPPR_long,PRORP
Model size3511
Max annot lvl121069|Pythiales
Hectar predicted targeting categoryother localisation
Exons11
Evalue2e-54
EggNOG OGsCOG0534@1|root,KOG1347@2759|Eukaryota,1MF35@121069|Pythiales
Ec32 ortholog descriptionRibonuclease Zc3h12a-like
Ec32 orthologEc-01_005100.1
DescriptionSource PGD
Cds size2574
COG categoryV
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.168.7prot_P-littoralis_Contig21.168.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 630111..640791 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.3293896-UTR-P-littoralis_Contig21:629025..6293761680790024.3293896-UTR-P-littoralis_Contig21:629025..629376Pylaiella littoralis U1_48UTRP-littoralis_Contig21 629026..629376 -
1680790024.3414712-UTR-P-littoralis_Contig21:629531..6301101680790024.3414712-UTR-P-littoralis_Contig21:629531..630110Pylaiella littoralis U1_48UTRP-littoralis_Contig21 629532..630110 -
1680790024.4488394-UTR-P-littoralis_Contig21:640791..6407981680790024.4488394-UTR-P-littoralis_Contig21:640791..640798Pylaiella littoralis U1_48UTRP-littoralis_Contig21 640792..640798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.352222-CDS-P-littoralis_Contig21:630110..6302721680790024.352222-CDS-P-littoralis_Contig21:630110..630272Pylaiella littoralis U1_48CDSP-littoralis_Contig21 630111..630272 -
1680790024.3605807-CDS-P-littoralis_Contig21:630723..6309041680790024.3605807-CDS-P-littoralis_Contig21:630723..630904Pylaiella littoralis U1_48CDSP-littoralis_Contig21 630724..630904 -
1680790024.370369-CDS-P-littoralis_Contig21:631171..6312541680790024.370369-CDS-P-littoralis_Contig21:631171..631254Pylaiella littoralis U1_48CDSP-littoralis_Contig21 631172..631254 -
1680790024.3816876-CDS-P-littoralis_Contig21:632811..6330151680790024.3816876-CDS-P-littoralis_Contig21:632811..633015Pylaiella littoralis U1_48CDSP-littoralis_Contig21 632812..633015 -
1680790024.390164-CDS-P-littoralis_Contig21:637320..6381881680790024.390164-CDS-P-littoralis_Contig21:637320..638188Pylaiella littoralis U1_48CDSP-littoralis_Contig21 637321..638188 -
1680790024.398996-CDS-P-littoralis_Contig21:638488..6386651680790024.398996-CDS-P-littoralis_Contig21:638488..638665Pylaiella littoralis U1_48CDSP-littoralis_Contig21 638489..638665 -
1680790024.409262-CDS-P-littoralis_Contig21:639084..6392361680790024.409262-CDS-P-littoralis_Contig21:639084..639236Pylaiella littoralis U1_48CDSP-littoralis_Contig21 639085..639236 -
1680790024.4201336-CDS-P-littoralis_Contig21:639584..6398121680790024.4201336-CDS-P-littoralis_Contig21:639584..639812Pylaiella littoralis U1_48CDSP-littoralis_Contig21 639585..639812 -
1680790024.4306393-CDS-P-littoralis_Contig21:640206..6402311680790024.4306393-CDS-P-littoralis_Contig21:640206..640231Pylaiella littoralis U1_48CDSP-littoralis_Contig21 640207..640231 -
1680790024.4400024-CDS-P-littoralis_Contig21:640297..6407911680790024.4400024-CDS-P-littoralis_Contig21:640297..640791Pylaiella littoralis U1_48CDSP-littoralis_Contig21 640298..640791 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.168.7

>prot_P-littoralis_Contig21.168.7 ID=prot_P-littoralis_Contig21.168.7|Name=mRNA_P-littoralis_Contig21.168.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=858bp
MSELKRKREDNDPEGEEPCAQDATRVAEPNESLAAPPSPVAPTASVAAAA
MPPSTTDINTPIERAAAAALADTAPPASSSSSSGVSATAATTADGDAVVK
AAAASTTSAASSSSSPPSARNNERAPKPTKKILICGKEVTLKDTGGRKKR
KQPMEALVILAYKGHKGIKQDLSTHLMVLSLCGGSPGEKDELDPGNGSTR
NGSTRPHHAATLARAAADDAAALAKPTEGEVGNASAQENTHAAAEAALQI
FSDASNGGAVSLPESAYTAVIRACCLDGRADRGREFLEALKRADVRPRVR
TYAPLLEAYSGLDGRLQDCMDIWHDAVAVPEEGRPGITMTEREYLHLVAA
CTRAKDEKCFLEVMEEYMDDVLQPRSRHSWDVLKAWFKVAPNDIGNGVTE
QVKPAAAAQEEKPEASGNGDPGGGKDGAVEPGTSSTAVATEAEDTAAAQA
AGVVEAEQGTVSTTVTTEAVGVPAASEATSSTPAPSDAPEQDTSVSSSSP
SPSKAVIPKTPGAAEDRDDIAAAADGDDSMGLEKKSPRGDDKVDADSSPM
ETETEEESSSRGGGCCGGDGDAIGMAKDLPSDEGVCAAEGADADVDADAA
LKESPSGSDGSWIVTECKVDEDGTCNNCGEVLKSIDLSPDDERRLLEQIN
VMVCTNEQRTKQWEGFRGWLDRRGKERYNVIIDGANVGYYKQAALSNSEL
ADLEQVDWAVRKYEKEGKKPLVVLHSRHLVENRLSDEANEIYKRWKEEGV
IQSCAPKNNDDWYWLYAAVYTGGAVLVLTNDEMRDHHFSMLSHRSFQRWR
ERHQTRFSFGEWNEEGDMRELIADEPRTYSKRTQKGVDSWHVPLEGSGDW
LCARWRR*
back to top

mRNA from alignment at P-littoralis_Contig21:629026..640798-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.168.7 ID=mRNA_P-littoralis_Contig21.168.7|Name=mRNA_P-littoralis_Contig21.168.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=11773bp|location=Sequence derived from alignment at P-littoralis_Contig21:629026..640798- (Pylaiella littoralis U1_48)
CGCAGGAATGTCGGAGCTGAAGCGCAAGCGAGAAGACAATGATCCTGAAG
GAGAGGAACCGTGCGCACAAGACGCCACCCGCGTGGCGGAACCAAATGAA
TCACTAGCAGCGCCGCCATCGCCCGTTGCTCCTACTGCTTCTGTAGCAGC
GGCTGCAATGCCACCATCAACAACGGATATCAACACACCAATTGAGCGTG
CGGCGGCGGCTGCACTTGCAGACACAGCACCACCTGCCAGCAGCAGCAGC
AGCAGCGGTGTCTCTGCTACTGCTGCCACCACAGCAGACGGGGACGCAGT
AGTTAAAGCAGCAGCAGCATCAACAACATCTGCGGCGTCATCTTCTTCAT
CACCGCCGTCCGCTCGTAATAACGAGCGCGCACCTAAACCCACTAAGAAA
ATCCTGATCTGCGGCAAGGAGGTCACCCTCAAGGACACGGGCGGGCGCAA
GAAGCGCAAGCAGCCCATGGAGGCGCTTGTAATCCTGGCGTACAAGGGAC
AGCTGGCCATGGCGTGCAAGGTGAACAGCATGCTGTCCGCGCTGGAGATC
TACCAAGATATGAAGAGCAAGGGCATCAAGCAGGATCTCTCGGTGAGTAA
GAGGGAAAACCACATGAAGTTTATTTCATTGCAACAGCACGGGTGGTCCT
CCTCGACTTGAACAGTTTGTAGCAGTGCAACATTCTACAGCAGTAGTTCA
ATGTCTGCAAATGGAGGTAACCCCCGCTGACTTGAACGGAGTACTTCGTA
ATCAAGTTTGATCGCTCTTGCTGCATTCCCAGTGTCAGCGTGCTGACAGC
TTCTGGTGGGCAAAAAGAAATATTTCGAAGTACTGTACCGGAGTGCATAT
ATTGTACAAGGACATAACAGGAAAAAAACGCCGTCCACGAGCAACACGAT
TCCTGAAATCGCGCCCGCCCCCCCCAAACCACCCCTCGTGGCCGCGCTCA
GTGACTCATCTCTCTCTTGCGCTGCTGTTGTGCCAGACTCACCTCATGGT
CCTATCGCTCTGCGGTGGCTCACCGGGCGAAAAAGACGAGCTGGACCCGG
GTAACGGATCAACCCGTAACGGCTCAACCCGCCCTCACCACGCTGCCACA
CTCGCCAGAGCCGCCGCCGACGACGCCGCTGCTCTCGCCAAACCGACCGA
GGGAGAAGTCGGAAACGCCTCCGCCCAAGAAAACACCCACGCTGCTGCCG
AGGCGGCGCTGCAGGTGCGGCGTTAATTTTATATTTCATTTGTCATGAAA
GGAAAGAGAGAAGGGTACAGTACAGGAGCTCTCTCGGATAAAGTGCGGAC
GTGACGTAAACGAAGCTTCCGGGTTTTTGCCAGCGTTGCTGTCGCGTTTC
CTGCTGCTAGAAATTCGATTTCGCTTTGATAAACCACAAACTACGGAGTT
AATGACATTCGCAAACGGGTGCATGTCTCAACTTGCCTGTATCTCTCCCC
CACTCCTCTTTCTCCCGTCCCTCCTGCCCCCCCCCACCACCACCACCACC
TGCGCGTCTTGCGCACGTCGTCGATCGCAATCGTTTTCGTTTCTCATCGG
CCGTCAGCGCAGATATTTTCGGACGCGTCGAACGGCGGCGCCGTGTCCCT
GCCAGAGTCGGCGTACACGGCCGTGATCCGCGCGTGCTGCCTCGACGGCC
GAGCGGACAGAGGTCGGGAGTTTCTTGAGGCCCTCAAGCGAGCCGACGTC
AGACCACGCGTAAGGTGGGTGGATGTGTGGGTGACTCCTGTGTGTTGCCT
GTCACTGGCACACCGCAATGACCGTCACTGGCGTGCGGTTGTGTGAGTGA
CCGTGTGTCGATCACAACAGCAGTAGTCTCATGGGTCGCAGTTCGGTGCC
GTGCTTCGGCTGTTGGTGCACCGATGCGCACGCGTTGATGAGACAGACCC
CACGCAGCGCGCGGGGCTTACAGAAAGGTTCCCGTGCTTACCCTTGCCCT
TGCGCCCACCCGTCTCTTTCGATTGATTCGCTTCACTCCGCCTAATTGAC
GCTGATGGCGTTTGTTGTATATTTCGAAGTACAAGTTTTGTGTCTTGTGT
GCTTGCTTTGCTTTGTTTTGTTCTATGCTCGCACGCGCGAAGGAACGAAT
GCGAATGCAACATCGTGTTTTTCTGCCAACCAGGACGTACGCACCGCTGC
TGGAAGCGTACTCGGGACTCGACGGGCGGCTGCAGGACTGCATGGACATC
TGGCACGATGCAGTGGCGGTTCCAGAAGAGGGGCGGCCAGGGATCACCAT
GACCGAGAGGGAGTACCTGCACCTCGTTGCCGCGTGCACCAGAGCTAAAG
ACGAAAAATGGTGAGATAGATCTCACCCGCGCAGCATCCGTGATGCGCTT
CGGGACCATGTGTCGCCGGCCCATCTGTTTGGTGGGTTTTTGCCCGCGTC
CTTTGACAGTGTGGGGACTGTTCATTGGTAGGTGTTCGTCCGTGTGTGTT
TGTGTCTTCGGGGCGTGTATGTTGCATCGATTGACAATGCTGGTTTGACC
TAACGGTCGTTTCCCACGTACAGCCACCGAGCGATCTTTATCCTCATTGC
CTCTTGACGAGTTACTCCCCTACCCTCTTCGTTCGTATGTACTCCTCTAC
ATTTGGCCAGCTTTTTGGAGGTAATGGAAGAGTACATGGATGACGTGCTC
CAGCCACGCAGCCGACACAGCTGGGACGTGCTCAAGGCGTGGTTCAAAGT
TGCCCCCAACGATATCGGCAACGGCGTCACGGAACAAGTGAAACCAGCAG
CCGCTGCTCAAGAAGAGAAACCAGAAGCATCTGGCAACGGCGACCCTGGT
GGAGGAAAGGACGGAGCAGTAGAACCAGGAACGTCCTCTACCGCAGTTGC
AACAGAGGCAGAAGATACAGCAGCAGCACAAGCGGCAGGAGTGGTGGAAG
CAGAACAAGGAACGGTCTCCACCACAGTTACGACGGAGGCAGTCGGAGTA
CCAGCAGCATCAGAGGCAACCTCGAGCACTCCTGCCCCTTCTGATGCACC
GGAACAGGATACCTCTGTGTCGTCGTCGTCGCCATCGCCGTCGAAAGCAG
TGATACCCAAAACGCCCGGCGCCGCAGAAGACAGGGACGATATAGCAGCA
GCAGCAGATGGTGACGATTCCATGGGGCTAGAAAAAAAGTCACCGCGTGG
TGATGACAAGGTTGACGCCGACAGCAGTCCCATGGAAACAGAAACGGAAG
AGGAGTCGTCATCGCGCGGTGGTGGTTGTTGCGGTGGTGATGGTGATGCG
ATTGGAATGGCAAAGGACTTGCCGAGTGACGAGGGGGTTTGTGCGGCTGA
AGGTGCCGATGCAGATGTCGATGCAGATGCCGCCCTAAAAGAGTCGCCGA
GCGGTAGTGATGGTAGTTGGATAGTGACGGAGTGTAAGGTCGACGAGGAC
GGCACGTGCAATAACTGCGGAGAGGTACTGAAGTCGATCGACCTCTCTCC
GGATGACGAGCGGCGGCTGCTTGAGCAGGTGGGTCGTCCTTTTCGGATAT
GACTTGGTGTCTGGGTCTTGGTCTGGGCGTGTCTCTGCTTTTTTGCGGGC
TCTCTCTAGTTAAAGTATTTGTGATGTAGATCTGCCTTTTCGAAACAAGC
TCATTGCGGATGCGCCTTGCTCTCGGTGTCTGTTCTGTGGTATGAGAGTG
TTTCGCGAAAGGCGAGATGCAAACATGCTTGCGGCCTGAAAGAACGCAAT
CGTTTTGTAGCTTTTGTGTCAAACGCAGGTTATGGAGTTCACGAATGGTT
CCACGGCGCGTTACTTTAAACACCGTGGACCTCCCTGTTGAGTATCACAT
CCCCCAGTGACTGCATCGATATTAGCTCTATCGGACGGGTCCTCAAATAG
CCCGAATTGACGAGAAGGAATCGTGAGGAGGGGTTAAACAACATTCAAGA
GCTAAAAAGAACATACGACTGGCTTCCCATCGTTTCGTGTTACGTGCGTA
GTGCAAGGGGTTCCATCGCAAGGAAATTCATCAACTGTTGCCCCAGTGAC
TGCATCGATATTAGCTCTATCGGACGGGTCCTCAAATAGCCCGGATTGAC
GAGAAGGAATCGTGAGGAGGGGCAAAATGAAGTCGTACGAGTAGAAGTTG
AAGACAGTACTTGCCGGTGTTGCATGTGCGAAGTACAGCGGTTTTACTCA
CACGATCATGACCAACTGTTGATCCGAGTGAAAGCATCGATATTGGCTCT
ATCGGACGGGTCCCCAAATAGCCCGAATCGACCAAAAGGAATGTGAGTCT
GGGTAAAAAAAGAATTCAGGACATGAGAAGAAGGAAAAGGCGGAGGCTGG
CTTCCCAGTTTTTCGTGTACGACGTGCAAAGGTGTTCTCAACAAGAGAAG
AATATACCAGTGTCGACCCCAGTTACTGCATCGATATTAGCTCTATTGGA
CGGGTCCTGAAATAGCCCGAACTGACGAGAAGGAATCGTGAGGAGAGGCA
AAAGCTTGAATCGCACAAGTAGAAGTCGAAGAAGACTTGCCATGATGCGT
GCGAAATGCAACGGTTTGCTCATAGTACAATCACCAAGTGTTTACCCCAA
TGACTGCGTCGATATTAGCTCTATCCGACGGGTCCTCAAATAGCCCGGAT
TGACGAGAAGAAATCGTGAGGAGGGGTAATTTTTTGGTAAAAAGTAGCTA
TCAGATAGGCTTTGCGGCCTGACAACCATACTTTCAGTGCAAAGGTTTCA
ACGCTTTTACACAGGAAAATGCAAATTTGTTGACCCAAGTGACTGCATCG
ATATTAGCTCTATCGTACGGGTCCTCAAATAGCCCGAAGTGACGAGAAGA
AATCATGAGGAGGGGTAAAATACCAACAGGAGCAGAGCAGCGATGTTACA
ATTTGCAGCGGTGCTTCAATTTTTTATTTTTGAAGCCATCGTCGCTTCGC
AGTTGTTGGTTGCATAGATAAGTGTATGTTTGCATTGGTTGTTTTTCCGT
AAGCACGAGAAGGATTATAGTGCAGGCACTCGCAAACGAAGACAGAACGA
CAGACAAGATTTTAAGAAAATAATAAAAAAAAATGCGTTTTTTTTCCCCA
GTGACTGAACGATTCAAATGCTCTATCGATCGTATTACCTTCGGGCCTTA
CAATCCTGGGGGTTCTCTTGACGATAATGATTATCGTATTAAATAACAGG
AGGGGGAAAAAATACCTGCGCTGCTGTTTACTGCTGTTCTGCCGTCTCGA
GCATGACTATCCTGCGTTGTTGTCCGTACGTAGACCGAAGAAGCATAAAG
CAGAGCCAGACGAGCGTGCCAAGGCTGTACCGTTTTCAGTTTTCAACCAT
GAGGGCGTTCTTCGAGGAACAGCCCGCTGCGCAAACGGAGCCCTCCTCCA
AGTATCATGGCGGTGGGCACCCTTCGCGGGATTGATTCTTCTCTCGGCCG
CGACAACCCGACAAATCTGGGGGTGGTGGATGGTCTCCTGCTCGTGTACT
GCACACTGCTGTAATGCGGGAGAAATATTGTCATACGATAGCGGCAAAAC
ACGATTCGACAACGGGACGGAGGAGCCCCGACAACAGGCTCTCGCGGTTT
CGGCGGCCCGGGAGGCCACCACCAACGCTCTCGATGGGAGTCGCGCATCG
CCCGTTGGCATTCGCAGAGACATGTCATATGATATGCGGCCACGCGGAAG
GATCCGTTCTGGTTGTGATGATGTTTTTTTGCCAGTTTTCACCCCTCGCA
TACTTTGCGGGAGACCCGCCACCCGCGGGGGCGGCCCCGCAGTGTTATCG
CGGACGGGCGGGAGGGAGCCATCCCCGCGTAGGAGAAAAATGACTCTCCC
TCTGTAACATGATAGTTTGAGGCAAGCTCCGCTTGCGCAGCCAGCGCGCT
GTTCCCCGAAGAATACCTACCTCTTCCTCGGGTTCTCTCTCCTCGGGCTC
CTCTCACGTCTTTTCGTTGTCGTCCTCCTCTTCCTCTTCGGCCTCGGCAT
TGCTCCTACCCCCCCTCCAGCTCCCCACCGGTGCCCCGCTGAGTGTTGGC
GAAGAGGGTAGGGCCGGTTCCGAGGAGCAATCCGGAGAGGCAGCGTCAGC
CGCGGGTGTCCTAGCCGCCGGCGTTGTATCGGCTGGGGTGCCTTTTGGCG
CTGACGCCTATTTTGGTTCCTCTCTCAACAACCCCCAGTTCTTGTTACCT
CGCTCGGAGCTTGTTAAAGCTTTGCCGTTTTCCTGCGATTGGAAGACGGC
ACTGCCCTCACGGCCCGAGCGGTTGTGGCGTTGATTTGTTGTTATCCTTT
CTTGTCTCTTTTTCGTTTTTTTCCCCCCATTTTTATTCGCTCTACAGCAG
TAGAACTTCTTTCCTTTTCTTTTTTCAAATCGACGCCAGTACACACCCAG
GCTGACTTCGGTAGACGTCGCCGTAGAGGGTCCCAGGGGCGTGGTCGTAT
TGGCCCACGACCAAGGGCCGGCAATGTTCTCTCACGTAGATTTAGCAAGC
AAGAGTACAAAATTAGAGTGGCAAAAGGGTCCTACCGAAGTGTCTACGAC
TTGCCCACCGGAAGGTACAGCCAGATTTCCGTCGGATTGGGAGAGTCCGA
GAAGACTCGTCGTGTCCTACGATATCTCGTTGTATCCGCGCAGAATGTTC
ATGATATCCCTAAAGCTCGGTTATACACAACACGAGACGAAAAATAACAC
AGCGCTTCCTTCCCCAGTGACTGATCGATTAAAATGCTCTATCGATCGTA
TTTCCTCGGGACTTACAATCCTGGGGAACTTTTGACGAGAATGACTGTCG
TATTAAAAAACAGGAGGGGAAAAGAATGGCGCGCACGCTGTTTACCGTAC
TCTGCTGCCACCTTGACCATTGCCGTTCTGCGCGATGTTTTGTGTGTCGA
GAGTGTAGAACGAAGACGCAGAGCAGACGAGCGTCTCATGGTTGCCGCGT
TTTCCAAACTACGTAAGCATCTGACTAGCATGGGTGATGTGCCGTTCATG
TGATTGCCGCTTCTGTTTTCTTGTCGAGTGAAACCAAGCTGTGTCTGAAA
GCCAAAAATATAAAATAAAACGTGCGAAAGTGCTTGTGATAGTGTTTCGG
AGGTGTGTACCCACATGTACCGACCCTATCCCCAGCACCGCTTCGGTAGG
CAAGAAACGGTCATTGTTCCTGTGTCGCTTGAAAAGGCACAAAACACCAG
TGTCCGTGATATGGAAGGGTTTGGGTGTCGGCCTGCCTCTGTAGTACGGC
GCACGCTGACAGGAGTATCGTGGATGAATCTTGTTTTTTTTGTTTGTGGT
TCTTCCCGGTGACTGAACGATTCAAATGCTCTATCGATCGGATTTCTCGG
GGCCTACATTCCCTGAGATCTTCTTGACGAGAAAAGAACATTTGCGCACA
TTGTGTGTGTGAGGAGGGAAAGCACAGCCGTTGTTGTACGAGTGCGCACG
TGTACTGTATCTGTCGCAAGCGCGCGCTCTTGGTGTCAATCCCCACAACG
AACGTGGTTTCGCCGGCATTGTTTGTGACCGTCGTACTCCGTTTCGTTTT
GTGTACGTACTGTACTGCTGTACAGTAGTCGATGGTCTCAATTTTAAAGC
GAGCAAATAACCCCCCCCCCCCCAAGAAACCAATATGTGAGATGTGGCAA
AAAAGTGAAAAACGCCCACGTGTTGGTGACTCCATCGTGGGTAGGAACGG
TGCCGCTCCGGTCTTGAACGGGTTGCATGTCTTGTCAAAGGTCAAGTTAC
TAAGGCAAGCAGCAAATGAGCACACCCCCTCCCCCTCCCCCTCTTGTCTG
TACATCCCGCCCCCATCCCCGACCCCCCCGCAGATCAACGTGATGGTTTG
CACCAACGAGCAGCGCACGAAGCAGTGGGAAGGTTTTCGAGGCTGGCTTG
ACCGGCGAGGGAAGGAGCGGTACAACGTCATCATCGACGGCGCCAACGTG
GGGTACTACAAGCAGGCCGCTCTCAGCAACAGCGAGCTCGCCGACCTCGA
GCAGGTGGACTGGGCGGTCAGAAAGTACGAGAAGGAGGTGAGGGCACGCA
CGATTTCTGAATCGCGTCACACTGCTGTGTATCCAACATGATTTTACCTG
TACAGTGCCTTCACAAGGGGTTCAAGCACATTGCTGAAGTTTTTTTCCCA
ATTGTGCGGTTAGAGGAGGAGGGTCTTTGGAGGCGTCGCTGACTTGATCG
CGTTTGCTGTTCGGAAACGTGATATGATTGTATCGGCTTGTTCTGGACCT
GCAGTACAGTGAACTTGACAAATTATTTTTCATGCTGAAGTGACCAACAA
TGAACATGACCAAAACCCCAAGGCGATGGCGATTCTGGGTCTGAACGTGA
AGTCGAATGTCGGTGAGGTGTCTACGGTCTGAGATTTTTTTTCTCGTATG
ATGCCTAACAGAGTCGAGGGCGAAATGGCCGTGGGTACATACACGAAATT
CGACTTTGGGCTCGGCGAGGGAAATCGGGACTGAAGCACGAGATTCCTGA
CAGAAGGGGACGTGGAGAAAAAAGAAAACTCCTGCGTCGACGTCCCGTGT
GACCCCGGCTGGTGTGGCCAGAACATATACTGAACGGTGTAGACCGACTT
CTGTAAATGGGATGGCACTACTCACACAATTGACGTCGCAGAGGCCAAAC
TGATATCCACAACGGGATCCTTTCGCTTTTTCCTTTCTCCAACCGAGACT
CTCGGTAGGCTGTAAGCTTTTCATTCTTCTTGCAATGCAAGCGGTGACGA
CGAATTTGGGAGGAAATACTCTTCGTTTATTTGCCACGCAGTGATTTTTC
CATCGGTTTGACCGACCCCCCACTTAGCGTAAGGTGGGGAGGGGGGGACT
AATCCGCCCTACTGCTCTGGCGAGTTGAAAATTATTTGACAAGCCGGGGC
AGTGCTGTTGGGGGTGTCGCCAGGCGGTTGTTTGGCGTGCCAGTTTCGTA
TGTGTATGTGTGTGTGTGTTTTCCTGCGTTGTCGTCGGGTCTGTCAGTTC
GATCTGGCTGGTACTGCCAGGCGTTTTTCCGGTTTTCCAGTTTTTTTTTC
GCTTCCCACGTCTTCGTCGAGCTGTCACCAGCCTGGATGGGCAGCATGGA
CACACGCACAACTCGACGTCGACAAAGCTTTGCCTATGACGAACAGCCAC
ATTTCGCAAGCACGAAAGAGGGGCGACTGTGGTGAAGGCACGCGCGAAAG
CGCTCCTGTTTCCAACCACTCCGTCCTGCTTCATGCGTGATTTTTCCGCT
GCGTTCTTTCCGAGGCATTCAAACGGGAGTTTCTACCAGTGTTAATCTGT
AGCTTGGCGGGGGGGGGGGGGGTAAATGCATCGTCGTTTTCCGTTGCTGG
CACGTGCGGGGAGCTTTGCGCCCACACCATGTTGGCAATTATTATTTCAA
GGGCGAGTCGCCAGCACAAAAAACGTGTTCCATTTCTCGTAAATATCATG
TGTACAAATGTTTTTTCTAAGTCATTTTTCGTTATTTTTTAAAGTTGTTT
CGAAACGCAAAGAAAGGCGAGCCCTCTCTGTCCGGTTGAACGTGTGTACT
CTGTACGCCTCAAATGCTGTTGGGTTTCTTTCCCCCGCGATCAGGGCAAA
AAGCCGCTGGTCGTGTTGCACAGCCGACATCTGGTGGAGAATCGCCTCTC
CGACGAGGCTAACGAGATTTACAAGCGGTGAGATGAGATAACACCGCCGC
ATCACACGGTCAAATATAAAGTCTCGAAGCACTCCCTCTGTAATGCTGCG
CATGTATATATACAACGCTTTGCTATGTTTTTTTCGTTTTCGTTGGCGGC
TGGTGCCGGTAAGGCACACATCCACGACACAAGACATACCCGACTCGAAA
TAAGGAAGTTCGTGAAGAAATTGGCGGAAGGCAGGCTCTATCCCAACATT
TTTTTTTGTTCGCTATCTCTACATACTTAAAATGAACGGATCAGGTGGAA
GGAAGAGGGTGTAATCCAGTCGTGCGCGCCGAAGAACAACGACGACTGGT
ACTGGCTCTACGCGGCGGTGTACACGGGGGGCGCCGTGCTGGTGCTGACT
AACGACGAGATGAGGGATCACCACTTCTCCATGCTGTCGCACCGCTCGTT
CCAGAGGTGGAGGGAGAGGCACCAGGTATGTACGAGTATGCTATGTATCG
CATGGCATGGCATGCTGTTCGCGTTTCTTTTCGAAACTGTCTTCGAACGT
TTGGGGCAAAATTTTCTCGGTACGTGGTATTTTCTTCTCTGAGAGACTGC
CGCCACTTGAGGTAAAGCCGACACCACGTTTGCAAGCATTGCTTTTTGGT
GCTGGCCTCTGGGCGTCGTGGCGGCCGCCAACCAACGGTTCTTGCCTCCT
CTTCCTTTCCTTCTGCCGAGGATACACATGTACGGCGATATGATGTGTGT
GGCTTTTTGCTTAACGAAAAGCACAAAACATGTCGTATTCATCTGGCACA
ATTTTTTTTCCGGTGTCAAACCGCAGCGTTGATGTACCCCCCCCCACCCA
TCCCCGCGCGCCTTCCTCTCGTTACTCCCTCTCCCCCTCCTGCTCTTGTT
CGCTAATCGGCTTGAAAAAAAAAAAGACCCGTTTCAGTTTTGGCGAATGG
AACGAAGAGGGTGACATGCGAGAACTCATCGCCGACGAGCCCCGAACGTA
CTCTAAGCGGACGCAAAAGGGCGTCGATTCGTGGCACGTGCCGCTCGAGG
GCTCGGGAGACTGGCTCTGCGCTAGGTGGCGGCGATAACGAACAGCGCTC
TATTTTTTTATGATCGGTGTTTGTTTGTCGACCTATGTTGAAAAGTTTTG
CAGAATTTCGGTGCCACTCTGGCACGCAGTTTCCTGATTAATCGCAAATT
GATGCTGCTGCACACATTGGACAGCAGTAGAAGCCAAGGTTTAAATTTTA
AGGTATGTGTATGTCGGCGGTGTACCGTAATCATGCGAAGGTTGGCACCG
GGGTGCGATCGATTTTTAAATGTTTCTTCGTTGTGTTTTTATCGCACCCC
GGTGCTATCTCTCCGATGGGTGCCAACCTTCCGATGGGGGTGCGGAAATA
CGAATAAATCATGCCGTTCTTCAATTTTGGCGCACCCCCGGTGCGATCTC
TCCGATGGGTGCGATACCGAGTACCACAACAGCTGGATACCGCACCCACC
CTGTTGCAGATGTAGGGCACAGTAAACACAGCAGTTAACACATACCTTAC
ATCACCCAAAACGGTGTGCCGGCGAATTGAGAATCGATCCGGTATAATAC
GGCACAATACCCCGAAAAACGCGGCGGCATTCCGCTGAGATGCGCAGCGT
CCACACAAACCCACGGTATCCAGACCACCCCCTGCAGCATCATGTCAGAG
GGTGCACGCTACCAGTTCTTGGGTGGTGGGGGGGGGGGAGTAGAGGAAGA
GGTTGAGCTGTAAAACATCGCTACAAAACCGGTACTTCAAAATCCCGTAG
ATCAGTAGAAAACAGGTGTTTTGTGCTTTGACCGTAGGTACCGTTGTCGC
TGGCTGGAATGCATAAGGGTATCGGAGTCTGGTGCGTGTCAACATGGCGT
TGGGGCTGGTTGTAGGGCCGAAGCGAGTTTGGTTGCGGCGTATTGCAATA
GGACGGAGAACGATGCTCCTGAGTACTGTTTTTGCTGAAATGTCACGTAC
ACTAAGTGTCTGCTCTTCGCTTTATGCTGAACCACTCGATCTCCTCTGTA
GTTCCTCTCTACCTCGGTTGCACAAGGTAGGAACCTAAAGTACGGTAATA
TCGTACCACGAGCTGGTTCTGTGATTTGTGAGGTGTACCGGTAGGCGGCA
TGTACCGGATGATGTGTGCTGTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig21:629026..640798-

>mRNA_P-littoralis_Contig21.168.7 ID=mRNA_P-littoralis_Contig21.168.7|Name=mRNA_P-littoralis_Contig21.168.7|organism=Pylaiella littoralis U1_48|type=CDS|length=2574bp|location=Sequence derived from alignment at P-littoralis_Contig21:629026..640798- (Pylaiella littoralis U1_48)
ATGTCGGAGCTGAAGCGCAAGCGAGAAGACAATGATCCTGAAGGAGAGGA
ACCGTGCGCACAAGACGCCACCCGCGTGGCGGAACCAAATGAATCACTAG
CAGCGCCGCCATCGCCCGTTGCTCCTACTGCTTCTGTAGCAGCGGCTGCA
ATGCCACCATCAACAACGGATATCAACACACCAATTGAGCGTGCGGCGGC
GGCTGCACTTGCAGACACAGCACCACCTGCCAGCAGCAGCAGCAGCAGCG
GTGTCTCTGCTACTGCTGCCACCACAGCAGACGGGGACGCAGTAGTTAAA
GCAGCAGCAGCATCAACAACATCTGCGGCGTCATCTTCTTCATCACCGCC
GTCCGCTCGTAATAACGAGCGCGCACCTAAACCCACTAAGAAAATCCTGA
TCTGCGGCAAGGAGGTCACCCTCAAGGACACGGGCGGGCGCAAGAAGCGC
AAGCAGCCCATGGAGGCGCTTGTAATCCTGGCGTACAAGGGACACAAGGG
CATCAAGCAGGATCTCTCGACTCACCTCATGGTCCTATCGCTCTGCGGTG
GCTCACCGGGCGAAAAAGACGAGCTGGACCCGGGTAACGGATCAACCCGT
AACGGCTCAACCCGCCCTCACCACGCTGCCACACTCGCCAGAGCCGCCGC
CGACGACGCCGCTGCTCTCGCCAAACCGACCGAGGGAGAAGTCGGAAACG
CCTCCGCCCAAGAAAACACCCACGCTGCTGCCGAGGCGGCGCTGCAGATA
TTTTCGGACGCGTCGAACGGCGGCGCCGTGTCCCTGCCAGAGTCGGCGTA
CACGGCCGTGATCCGCGCGTGCTGCCTCGACGGCCGAGCGGACAGAGGTC
GGGAGTTTCTTGAGGCCCTCAAGCGAGCCGACGTCAGACCACGCGTAAGG
ACGTACGCACCGCTGCTGGAAGCGTACTCGGGACTCGACGGGCGGCTGCA
GGACTGCATGGACATCTGGCACGATGCAGTGGCGGTTCCAGAAGAGGGGC
GGCCAGGGATCACCATGACCGAGAGGGAGTACCTGCACCTCGTTGCCGCG
TGCACCAGAGCTAAAGACGAAAAATGCTTTTTGGAGGTAATGGAAGAGTA
CATGGATGACGTGCTCCAGCCACGCAGCCGACACAGCTGGGACGTGCTCA
AGGCGTGGTTCAAAGTTGCCCCCAACGATATCGGCAACGGCGTCACGGAA
CAAGTGAAACCAGCAGCCGCTGCTCAAGAAGAGAAACCAGAAGCATCTGG
CAACGGCGACCCTGGTGGAGGAAAGGACGGAGCAGTAGAACCAGGAACGT
CCTCTACCGCAGTTGCAACAGAGGCAGAAGATACAGCAGCAGCACAAGCG
GCAGGAGTGGTGGAAGCAGAACAAGGAACGGTCTCCACCACAGTTACGAC
GGAGGCAGTCGGAGTACCAGCAGCATCAGAGGCAACCTCGAGCACTCCTG
CCCCTTCTGATGCACCGGAACAGGATACCTCTGTGTCGTCGTCGTCGCCA
TCGCCGTCGAAAGCAGTGATACCCAAAACGCCCGGCGCCGCAGAAGACAG
GGACGATATAGCAGCAGCAGCAGATGGTGACGATTCCATGGGGCTAGAAA
AAAAGTCACCGCGTGGTGATGACAAGGTTGACGCCGACAGCAGTCCCATG
GAAACAGAAACGGAAGAGGAGTCGTCATCGCGCGGTGGTGGTTGTTGCGG
TGGTGATGGTGATGCGATTGGAATGGCAAAGGACTTGCCGAGTGACGAGG
GGGTTTGTGCGGCTGAAGGTGCCGATGCAGATGTCGATGCAGATGCCGCC
CTAAAAGAGTCGCCGAGCGGTAGTGATGGTAGTTGGATAGTGACGGAGTG
TAAGGTCGACGAGGACGGCACGTGCAATAACTGCGGAGAGGTACTGAAGT
CGATCGACCTCTCTCCGGATGACGAGCGGCGGCTGCTTGAGCAGATCAAC
GTGATGGTTTGCACCAACGAGCAGCGCACGAAGCAGTGGGAAGGTTTTCG
AGGCTGGCTTGACCGGCGAGGGAAGGAGCGGTACAACGTCATCATCGACG
GCGCCAACGTGGGGTACTACAAGCAGGCCGCTCTCAGCAACAGCGAGCTC
GCCGACCTCGAGCAGGTGGACTGGGCGGTCAGAAAGTACGAGAAGGAGGG
CAAAAAGCCGCTGGTCGTGTTGCACAGCCGACATCTGGTGGAGAATCGCC
TCTCCGACGAGGCTAACGAGATTTACAAGCGGTGGAAGGAAGAGGGTGTA
ATCCAGTCGTGCGCGCCGAAGAACAACGACGACTGGTACTGGCTCTACGC
GGCGGTGTACACGGGGGGCGCCGTGCTGGTGCTGACTAACGACGAGATGA
GGGATCACCACTTCTCCATGCTGTCGCACCGCTCGTTCCAGAGGTGGAGG
GAGAGGCACCAGACCCGTTTCAGTTTTGGCGAATGGAACGAAGAGGGTGA
CATGCGAGAACTCATCGCCGACGAGCCCCGAACGTACTCTAAGCGGACGC
AAAAGGGCGTCGATTCGTGGCACGTGCCGCTCGAGGGCTCGGGAGACTGG
CTCTGCGCTAGGTGGCGGCGATAA
back to top