mRNA_P-littoralis_Contig21.167.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.167.1
Unique NamemRNA_P-littoralis_Contig21.167.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig21.167.1 vs. uniprot
Match: D7FNQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNQ7_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 9.460e-60
Identity = 104/161 (64.60%), Postives = 116/161 (72.05%), Query Frame = 1 
Query:    1 SVGPRGALTNASDFSSLDDFPELNITNEDDEMLTSLLNEAGWGGKSKGE--TVKVPIEWVVDIADKDNDWFLATAYGYNDAKQTLHVMVPDRDAPTWSGDVAVNPL-----------TVRLLECCDRHSVALFKQLVRESAIEVGWDVCIHELSSAATVTT 444
            S  P GA +NA     LDDFPEL IT EDDE+LTSLL E+GWG  S  +   + +PIEWVVDIADKDNDWFLATA+GYND KQTLHVMVPD   PTW+GDVAVN L           TVRLLECCD+ S+ALFKQLVRESAIEV WDV IH   ++ T  T
Sbjct:    4 SAAPPGAPSNAPSL--LDDFPELAITREDDELLTSLLQESGWGETSNEDDRAINLPIEWVVDIADKDNDWFLATAFGYNDMKQTLHVMVPDGINPTWTGDVAVNQLGIEINSFASLQTVRLLECCDKRSMALFKQLVRESAIEVDWDVSIHHRRTSRTNPT 162
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BLAST of mRNA_P-littoralis_Contig21.167.1 vs. uniprot
Match: A0A7S4ECV5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4ECV5_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.250e-23
Identity = 55/128 (42.97%), Postives = 77/128 (60.16%), Query Frame = 1 
Query:   22 LTNASDFSSLDDFPELNITNEDDEMLTSLLNEAGWGGKSKGETVKVPIEWVVDIADKDNDWFLATAYGYNDAKQTLHVMVPDRDAPTWSGDVAVNPLTVRLLECCDRHSVALFKQLVRESAIEVGWDV 405
            LT A   S+    P+LNI+  +     SL   AG       +   + IEWVVD+AD + +WF+ATAY  +  ++ L V +PDRD PTW GD+ ++P T+ LLECCD  S+AL+KQ  RE +I+  W V
Sbjct:   63 LTAACQASATAQLPQLNISERE---ALSLRQHAG-------DQTTITIEWVVDVADNNLNWFVATAYSIDTVRRVLRVAIPDRDEPTWEGDLPLDPKTIHLLECCDNKSMALYKQCCREGSIKCKWTV 180
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BLAST of mRNA_P-littoralis_Contig21.167.1 vs. uniprot
Match: A0A7S3GRB9_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GRB9_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.890e-22
Identity = 47/83 (56.63%), Postives = 60/83 (72.29%), Query Frame = 1 
Query:  157 VPIEWVVDIADKDNDWFLATAYGYNDAKQTLHVMVPDRDAPTWSGDVAVNPLTVRLLECCDRHSVALFKQLVRESAIEVGWDV 405
            VPIEWV+DIAD+ N WF  T Y Y+D  Q LHVMVPD++ PT+ G V ++  TV L+EC D  S ALF ++VR+S I+V WDV
Sbjct:   50 VPIEWVIDIADESNGWFYGTGYHYDDTTQMLHVMVPDKENPTFDGQVLLDHRTVHLIECVDGKSDALFNKIVRDSVIKVKWDV 132
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BLAST of mRNA_P-littoralis_Contig21.167.1 vs. uniprot
Match: F0XYC2_AURAN (JmjC domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XYC2_AURAN)

HSP 1 Score: 104 bits (259), Expect = 2.530e-21
Identity = 47/115 (40.87%), Postives = 71/115 (61.74%), Query Frame = 1 
Query:   61 PELNITNEDDEMLTSLLNEAGWGGKSKGETVKVPIEWVVDIADKDNDWFLATAYGYNDAKQTLHVMVPDRDAPTWSGDVAVNPLTVRLLECCDRHSVALFKQLVRESAIEVGWDV 405
            P L I+  + + L SL        ++  E   VP+EWVVD+AD + +WF+ATAY ++DA  T+ V +PDR+ P W GD+ ++  T+ L+ECCD  S AL+K +V  + + V W V
Sbjct:   28 PALTISARELDALRSL--------RASSEGAAVPVEWVVDVADNNLNWFIATAYSFDDAASTVRVAIPDREEPDWEGDLPLDHRTIHLIECCDDASAALYKHVVAAATVPVAWRV 134
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BLAST of mRNA_P-littoralis_Contig21.167.1 vs. uniprot
Match: A0A7S0SQT5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SQT5_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.210e-20
Identity = 43/83 (51.81%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:  157 VPIEWVVDIADKDNDWFLATAYGYNDAKQTLHVMVPDRDAPTWSGDVAVNPLTVRLLECCDRHSVALFKQLVRESAIEVGWDV 405
            +P+EWV+DIAD+ + WF ATAY ++D KQ LHVMVPD+  PT+ G V ++  TV L+EC D  + ALF ++VR++ ++V WDV
Sbjct:   56 IPVEWVIDIADETSGWFYATAYHFDDTKQELHVMVPDKHNPTFDGVVLLDYRTVHLVECIDSTTDALFNRIVRDNVLKVKWDV 138
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BLAST of mRNA_P-littoralis_Contig21.167.1 vs. uniprot
Match: A0A7S3K0G8_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K0G8_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 4.290e-16
Identity = 41/93 (44.09%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:  127 GGKSKGETVKVPIEWVVDIADKDNDWFLATAYGYNDAKQTLHVMVPDRDAPTWSGDVAVNPLTVRLLECCDRHSVALFKQLVRESAIEVGWDV 405
            GGK   E  K+ IEWVVD+AD + +WF+ATA+ Y+D  +T+ V +PDR  P W G + ++   + L+ECCD +S+AL+K +      EV W V
Sbjct:   54 GGKKTAE--KLEIEWVVDVADHNLNWFIATAFLYDDESRTIKVAIPDRIEPQWEGYLPLDHRCIHLMECCDPNSIALYKYIASLWTREVCWRV 144
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BLAST of mRNA_P-littoralis_Contig21.167.1 vs. uniprot
Match: A0A7S2Y050_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y050_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 6.130e-13
Identity = 33/82 (40.24%), Postives = 52/82 (63.41%), Query Frame = 1 
Query:   61 PELNITNEDDEMLTSLLNEAGWGGKSKGETVKVPIEWVVDIADKDNDWFLATAYGYNDAKQTLHVMVPDRDAPTWSGDVAVN 306
            P+L +T + +  L +++N        +     VP+EWVV++AD+  +WF+ TAY YND + TLHV VPDR+ P W GD+ ++
Sbjct:   73 PDLQVTPKMESDLEAVVN--------RNPPTAVPVEWVVEMADERLEWFVGTAYSYNDHEGTLHVCVPDRENPDWEGDMRLD 146
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FNQ7_ECTSI9.460e-6064.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4ECV5_9STRA1.250e-2342.97Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S3GRB9_9STRA3.890e-2256.63Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
F0XYC2_AURAN2.530e-2140.87JmjC domain-containing protein n=1 Tax=Aureococcus... [more]
A0A7S0SQT5_9STRA1.210e-2051.81Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S3K0G8_9STRA4.290e-1644.09Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S2Y050_9STRA6.130e-1340.24Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:617452..619572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog44056.XP_009033274.1
PFAMsAminotran_3,C2,Exo_endo_phos,Kinesin
Model size852
Max annot lvl2759|Eukaryota
KEGG rclassRC00078
KEGG koko:K20278
KEGG ReactionR04404,R09827
KEGG Pathwayko00562,ko01100,ko04070,map00562,map01100,map04070
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.15e-22
EggNOG OGsCOG5411@1|root,KOG0565@2759|Eukaryota
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_004620.1
EC3.1.3.36
Descriptionphosphatidylinositol dephosphorylation
Cds size852
COG categoryT
BRITEko00000,ko00001,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790024.2658708-CDS-P-littoralis_Contig21:617451..6175441680790024.2658708-CDS-P-littoralis_Contig21:617451..617544Pylaiella littoralis U1_48CDSP-littoralis_Contig21 617452..617544 +
1680790024.2776213-CDS-P-littoralis_Contig21:617905..6181241680790024.2776213-CDS-P-littoralis_Contig21:617905..618124Pylaiella littoralis U1_48CDSP-littoralis_Contig21 617906..618124 +
1680790024.2862475-CDS-P-littoralis_Contig21:618373..6184741680790024.2862475-CDS-P-littoralis_Contig21:618373..618474Pylaiella littoralis U1_48CDSP-littoralis_Contig21 618374..618474 +
1680790024.2997391-CDS-P-littoralis_Contig21:619133..6195721680790024.2997391-CDS-P-littoralis_Contig21:619133..619572Pylaiella littoralis U1_48CDSP-littoralis_Contig21 619134..619572 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.167.1prot_P-littoralis_Contig21.167.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 617452..619572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.167.1

>prot_P-littoralis_Contig21.167.1 ID=prot_P-littoralis_Contig21.167.1|Name=mRNA_P-littoralis_Contig21.167.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=284bp
SVGPRGALTNASDFSSLDDFPELNITNEDDEMLTSLLNEAGWGGKSKGET
VKVPIEWVVDIADKDNDWFLATAYGYNDAKQTLHVMVPDRDAPTWSGDVA
VNPLTVRLLECCDRHSVALFKQLVRESAIEVGWDVCIHELSSAATVTTAV
QGDRAQGSTLAGEKRPPSSSLESAATSTAPVPSAASSNAQVTVLLLLGNL
AVVELEGGNGRGSAITTPSAFTTADDGAASVRVCAVVGGDGDGDDTGVTA
DAESGETERRLLRLEERIEILHCRGMFRVYCTG*
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mRNA from alignment at P-littoralis_Contig21:617452..619572+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.167.1 ID=mRNA_P-littoralis_Contig21.167.1|Name=mRNA_P-littoralis_Contig21.167.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2121bp|location=Sequence derived from alignment at P-littoralis_Contig21:617452..619572+ (Pylaiella littoralis U1_48)
TCGGTTGGACCTCGTGGAGCTTTGACAAACGCCTCCGACTTCTCGTCGTT
GGACGATTTTCCGGAGCTAAATATCACTAACGAGGACGATGAGGTGCGAT
TAGGGGCGTATGACAGCGGCCTTATTCACATCTTTATAACCTAATCTTAG
ACGTTCGGCAGGACTTCTACGATAGTATATAGCACATGTAGCACCGATAG
TGACGCTTCTTTAAGGAGACTGGTGTTGACACATAAGTAGGGAAGCGTTA
TTTGTTGTGAGCGTCAGACGTTTTTTTTTTAAGAAGACGACGTCGACGAC
AACAAATACACCACCCGATACTTTGATTGACTGAGGCTGCACATATATTA
TCCCCGATCGCGACATGAAAAACTTAGACATCCCTTAAAAAATTTAGACA
CGCAGCAACCCCCCCCCCTCCCGCCTTCTTTCTTTTCGGCGACAACAACA
AAAGATGTTGACATCGCTTCTGAACGAGGCAGGTTGGGGTGGTAAAAGCA
AGGGCGAAACCGTGAAGGTACCGATCGAATGGGTGGTCGACATAGCCGAC
AAGGACAACGACTGGTTCCTCGCCACGGCCTACGGATACAACGACGCCAA
GCAGACGCTGCACGTTATGGTTCCGGACCGCGACGCCCCGACGTGGTCGG
GCGACGTAGCAGTCAACCCATTGGTGCGCGGTTTATTTCTTCATGATTGC
GGCTGATAACTCTACAATGTGCATACATCCATATCTCACGTCCAGTTGAA
GGTTCCACACGCATGCTCATCATGCATACGTATATACACAAAATAAAGAA
AGCCACCGTACGATTTAGGGTCGATCGTGACACGATCCACGAAACGAACT
GACGGTACTGCTACGCTTTCATACACTTCTGGAGAGAATGAATAACTCTA
CTTGTCGTCTTCCTTTCTACAGACGGTGCGACTCCTAGAGTGCTGTGACC
GTCACTCGGTGGCGCTGTTCAAGCAGCTGGTGCGAGAGAGCGCGATAGAA
GTGGGCTGGGATGTATGCATCCAGTGGGTAAGATATAAGGTACAAAACAA
GACCACACACACACATGCATGCACACTTTGAATCATGGCTTTACACCCAG
GCAGCAGAGAGACCACCATGAAAAAAGCAACTGAGAGATAGGAGAGCGTA
TGGGGGGAACGGGCACAATGAAACCAACTTCACGAATTGTACTCTGCGAT
TTTATTGTGTATCCTCGCTGTGCCACCCCTCGCTCGATGGGGTATTGTTT
GCCAACTCTCGCAACACAACGAACCGTGCAAGGCATGGTCTGCCTCGTTG
GAATCAAATGGCGTATGCACGATGCGACGTATAGAAAGTTGATGCACGCA
CGATCTCCCCGTCCGTGCACAGTTCGACCCCTCAAATGCCCTCCGCGTAA
CGTTATGCACGCGTGTCTCGGTTCGCCCGACGGCTTTCGGGTATATGCGG
ACGTGGCGTACTCTTCTCATCAAATTGTGTGGCTTACCCTGCGTGCGGTC
AATCTGTAGCAGCCGTCTGAGCGAGGCAAGCGGACTCAAGCAGCACTAAA
AAAAGAAGACAAAAACAGCGGCGGCGGCAGCAAGAATGGAGATACCAGGG
GTGCAGCATCATCGTCCAATCGTCAGGAAGAAGCAGGAGGAGAAGATCCG
ACGGATGTTTCGGTGGAAGCCGTCCCAAACAGTGAATTATCATCAGCAGC
GACAGTTACCACAGCCGTACAAGGAGACAGAGCACAAGGTTCGACGCTCG
CGGGAGAAAAGCGACCGCCATCTTCCTCTCTCGAGTCGGCCGCAACTTCA
ACGGCACCTGTACCAAGCGCGGCTAGCTCTAACGCTCAGGTGACCGTGCT
GCTTCTGCTGGGAAACCTCGCTGTCGTCGAGCTCGAGGGCGGCAACGGCC
GTGGGTCAGCGATAACGACTCCCTCCGCCTTTACCACAGCCGACGATGGC
GCTGCTAGTGTTCGCGTTTGCGCTGTTGTCGGCGGTGATGGCGATGGTGA
CGACACGGGGGTTACTGCTGACGCGGAAAGTGGCGAGACGGAGCGGAGGC
TGCTGAGGCTTGAAGAGCGCATCGAGATTTTGCACTGCCGGGGTATGTTT
CGAGTGTACTGCACCGGCTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:617452..619572+

>mRNA_P-littoralis_Contig21.167.1 ID=mRNA_P-littoralis_Contig21.167.1|Name=mRNA_P-littoralis_Contig21.167.1|organism=Pylaiella littoralis U1_48|type=CDS|length=852bp|location=Sequence derived from alignment at P-littoralis_Contig21:617452..619572+ (Pylaiella littoralis U1_48)
TCGGTTGGACCTCGTGGAGCTTTGACAAACGCCTCCGACTTCTCGTCGTT
GGACGATTTTCCGGAGCTAAATATCACTAACGAGGACGATGAGATGTTGA
CATCGCTTCTGAACGAGGCAGGTTGGGGTGGTAAAAGCAAGGGCGAAACC
GTGAAGGTACCGATCGAATGGGTGGTCGACATAGCCGACAAGGACAACGA
CTGGTTCCTCGCCACGGCCTACGGATACAACGACGCCAAGCAGACGCTGC
ACGTTATGGTTCCGGACCGCGACGCCCCGACGTGGTCGGGCGACGTAGCA
GTCAACCCATTGACGGTGCGACTCCTAGAGTGCTGTGACCGTCACTCGGT
GGCGCTGTTCAAGCAGCTGGTGCGAGAGAGCGCGATAGAAGTGGGCTGGG
ATGTATGCATCCATGAATTATCATCAGCAGCGACAGTTACCACAGCCGTA
CAAGGAGACAGAGCACAAGGTTCGACGCTCGCGGGAGAAAAGCGACCGCC
ATCTTCCTCTCTCGAGTCGGCCGCAACTTCAACGGCACCTGTACCAAGCG
CGGCTAGCTCTAACGCTCAGGTGACCGTGCTGCTTCTGCTGGGAAACCTC
GCTGTCGTCGAGCTCGAGGGCGGCAACGGCCGTGGGTCAGCGATAACGAC
TCCCTCCGCCTTTACCACAGCCGACGATGGCGCTGCTAGTGTTCGCGTTT
GCGCTGTTGTCGGCGGTGATGGCGATGGTGACGACACGGGGGTTACTGCT
GACGCGGAAAGTGGCGAGACGGAGCGGAGGCTGCTGAGGCTTGAAGAGCG
CATCGAGATTTTGCACTGCCGGGGTATGTTTCGAGTGTACTGCACCGGCT
AA
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