mRNA_P-littoralis_Contig21.12.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig21.12.1
Unique NamemRNA_P-littoralis_Contig21.12.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig21.12.1 vs. uniprot
Match: A0A6H5K8V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8V9_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 1.730e-26
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWAQISWLYVEAYAMGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDYS+ SLL RLP TLS++SLSL RKWA++SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  267 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 337
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BLAST of mRNA_P-littoralis_Contig21.12.1 vs. uniprot
Match: A0A6H5K2M3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2M3_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.330e-26
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWAQISWLYVEAYAMGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDYS+ SLL RLP TLS++SLSL RKWA++SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  590 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 660
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BLAST of mRNA_P-littoralis_Contig21.12.1 vs. uniprot
Match: A0A6H5L7W4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7W4_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 6.430e-26
Identity = 50/71 (70.42%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWAQISWLYVEAYAMGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDYS+ SLL RLP TLS++SLSL RKWA++SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct: 1038 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 1108
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BLAST of mRNA_P-littoralis_Contig21.12.1 vs. uniprot
Match: A0A6H5K7K1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7K1_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 9.740e-26
Identity = 49/71 (69.01%), Postives = 59/71 (83.10%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWAQISWLYVEAYAMGLDGYMQYRDLKKWTCHRSSTDRVDAVL 213
            RRVCDYS+ SLL RLP TLS+++LSL RKWA++SWLY+ AY+ GL+GY+Q RDLKKWT HRS TD  D VL
Sbjct:  397 RRVCDYSVLSLLARLPMTLSTVTLSLCRKWARVSWLYIYAYSHGLEGYLQTRDLKKWTNHRSPTDTADNVL 467
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BLAST of mRNA_P-littoralis_Contig21.12.1 vs. uniprot
Match: A0A6H5K344_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K344_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 5.450e-12
Identity = 31/44 (70.45%), Postives = 38/44 (86.36%), Query Frame = 1 
Query:    1 RRVCDYSIKSLLKRLPATLSSMSLSLIRKWAQISWLYVEAYAMG 132
            RRVCDYS+ SLL RLP TLS++SLSL RKWA++SWLY+ AY+ G
Sbjct:  473 RRVCDYSVLSLLARLPMTLSTVSLSLCRKWARVSWLYIYAYSHG 516
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BLAST of mRNA_P-littoralis_Contig21.12.1 vs. uniprot
Match: A0A0D7AD75_9AGAR (Uncharacterized protein n=1 Tax=Fistulina hepatica ATCC 64428 TaxID=1128425 RepID=A0A0D7AD75_9AGAR)

HSP 1 Score: 51.6 bits (122), Expect = 1.980e-6
Identity = 29/73 (39.73%), Postives = 43/73 (58.90%), Query Frame = 1 
Query:   10 CDYSIKSLLKRLPATLSSMSLSLIRKWAQISWLYVEAYAMGL---DGYMQYRDL--KKWTCHRSSTDRVDAVL 213
            CDY+ + L   L A L S+S+SLI KW Q  W +VEAY +GL   D  +Q ++   +K+T H   ++ V  +L
Sbjct:   71 CDYTYEGLKTHLDAALHSVSVSLICKWEQHMWHWVEAYQVGLNAKDAQLQVKNFSSRKYTSHHRVSENVAWML 143
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5K8V9_9PHAE1.730e-2670.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2M3_9PHAE6.330e-2670.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7W4_9PHAE6.430e-2670.42Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7K1_9PHAE9.740e-2669.01Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K344_9PHAE5.450e-1270.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0D7AD75_9AGAR1.980e-639.73Uncharacterized protein n=1 Tax=Fistulina hepatica... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig21contigP-littoralis_Contig21:55521..55733 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog588596.U9UEZ3
Model size213
Max annot lvl4751|Fungi
Hectar predicted targeting categoryother localisation
Exons1
Evalue8.45e-07
EggNOG OGs29JY0@1|root,2RT6R@2759|Eukaryota,39VBJ@33154|Opisthokonta,3P12S@4751|Fungi
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790017.4444685-CDS-P-littoralis_Contig21:55520..557331680790017.4444685-CDS-P-littoralis_Contig21:55520..55733Pylaiella littoralis U1_48CDSP-littoralis_Contig21 55521..55733 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig21.12.1prot_P-littoralis_Contig21.12.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig21 55521..55733 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig21.12.1

>prot_P-littoralis_Contig21.12.1 ID=prot_P-littoralis_Contig21.12.1|Name=mRNA_P-littoralis_Contig21.12.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=71bp
RRVCDYSIKSLLKRLPATLSSMSLSLIRKWAQISWLYVEAYAMGLDGYMQ
YRDLKKWTCHRSSTDRVDAVL
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mRNA from alignment at P-littoralis_Contig21:55521..55733-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig21.12.1 ID=mRNA_P-littoralis_Contig21.12.1|Name=mRNA_P-littoralis_Contig21.12.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig21:55521..55733- (Pylaiella littoralis U1_48)
CGCCGGGTGTGCGATTATTCCATCAAGAGTCTTCTAAAACGACTCCCTGC
CACCCTTAGCTCCATGTCTCTGTCGCTCATTCGCAAGTGGGCCCAGATTT
CGTGGCTCTATGTTGAGGCGTATGCCATGGGGCTCGACGGTTACATGCAA
TACAGAGACCTAAAGAAGTGGACGTGCCACCGCTCATCTACTGATCGGGT
CGATGCCGTGTTG
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Coding sequence (CDS) from alignment at P-littoralis_Contig21:55521..55733-

>mRNA_P-littoralis_Contig21.12.1 ID=mRNA_P-littoralis_Contig21.12.1|Name=mRNA_P-littoralis_Contig21.12.1|organism=Pylaiella littoralis U1_48|type=CDS|length=213bp|location=Sequence derived from alignment at P-littoralis_Contig21:55521..55733- (Pylaiella littoralis U1_48)
CGCCGGGTGTGCGATTATTCCATCAAGAGTCTTCTAAAACGACTCCCTGC
CACCCTTAGCTCCATGTCTCTGTCGCTCATTCGCAAGTGGGCCCAGATTT
CGTGGCTCTATGTTGAGGCGTATGCCATGGGGCTCGACGGTTACATGCAA
TACAGAGACCTAAAGAAGTGGACGTGCCACCGCTCATCTACTGATCGGGT
CGATGCCGTGTTG
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