mRNA_P-littoralis_Contig21.119.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY) HSP 1 Score: 360 bits (924), Expect = 9.170e-118 Identity = 183/213 (85.92%), Postives = 194/213 (91.08%), Query Frame = 2
Query: 53 MAVACAAGAQAFVAPSAFNGAALTSAKASNSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
MA+ACAA A FNGAAL ++ S+SAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAV GH+TQQN RLPGMLSF++N+AF D PNG+AAFSKIPPLGTLQIILAIG HELFVVKQVE SFPGDCTTGGNIFQSAWDN SEET+ASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAY+FN
Sbjct: 1 MAIACAA-APGLRGAEPFNGAALATSAKSSSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE) HSP 1 Score: 323 bits (828), Expect = 2.640e-103 Identity = 164/219 (74.89%), Postives = 187/219 (85.39%), Query Frame = 2
Query: 35 MKTACCMAVACAAGAQAFVAPSAFNGAALTSAKASNSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
MK+AC MA+ACAA A AFVAPSAFNGAA+ + S+SAMKMSFESEIGAQPP+GFWDPLGL+ADADQERF+RLRYVE+KHGRIAMLA+AGHLTQQNVRLPGMLS N++F D+PNG+AA SKIPP G QI +G EL V+K VE SFPGD T GGN F S+WD SEET+ SKRAIELNNGRAAQMGILA+MVHE+L+N+PYIINDL GA+Y FN
Sbjct: 1 MKSAC-MALACAASANAFVAPSAFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY) HSP 1 Score: 306 bits (785), Expect = 6.570e-97 Identity = 157/213 (73.71%), Postives = 179/213 (84.04%), Query Frame = 2
Query: 53 MAVACAAGAQAFVAPSAFNGAALTSAKASNSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
MAVACAA A F PSAFNGAALT++ + SAMKMSFESEIGAQ P+GFWDPLGL+ADADQERF+RLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLS N++F D+PNG+AA SKIPP G QI IG EL V+K VE SFPGD T GGN F ++WD SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL GA+Y FN
Sbjct: 6 MAVACAA-APGFRGPSAFNGAALTTSAKACSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY) HSP 1 Score: 299 bits (765), Expect = 5.060e-94 Identity = 155/212 (73.11%), Postives = 174/212 (82.08%), Query Frame = 2
Query: 56 AVACAAGAQAFVAPSAFNGAALTSAKASNSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
A+ACAA A PSAFNGAAL++ S+SAMKMSFESEIGAQ P+GFWDPLGL+ADADQERF+RLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLS N++F D+PNG+AA SKIPP G QI IG EL V+K VE SFPGD GGN F S+WD+ S ET+ASKRAIELNNGRAAQMGIL MMVHE+LSNQPYI NDL GA+Y FN
Sbjct: 1 AIACAA-APGLRGPSAFNGAALSTPAKSSSAMKMSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE) HSP 1 Score: 299 bits (766), Expect = 5.070e-94 Identity = 147/198 (74.24%), Postives = 170/198 (85.86%), Query Frame = 2
Query: 98 SAFNGAALTSAKASNSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
SAFNGAA+ ++ S+SAMKMSFESEIGAQPP+GFWDPLGL+ADADQERF+RLRYVE+KHGRIAMLA+AGHLTQQNVRLPGMLS +++F D+PNG+AA SKIPP G QI +G EL V+K VE SFPGD T GGN F S+WD SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL GA Y FN
Sbjct: 24 SAFNGAAVATSAKSSSAMKMSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY) HSP 1 Score: 290 bits (741), Expect = 2.210e-90 Identity = 148/211 (70.14%), Postives = 172/211 (81.52%), Query Frame = 2
Query: 59 VACAAGAQAFVAPSAFNGAALTSAKASNSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
+A A+ A PSAFNGAALT++ S+SAMKMSFESEIGAQ P+GFWDPLGL+ DADQ+ F+RLRYVE+K GRIAMLA+AGHLTQQN RLPGMLS N++F D+PNG+AA SKIPP G QI IG EL V+K VE SFPGD T GGN F S+WD S ET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL GA+Y FN
Sbjct: 6 MAVASAAPGLRGPSAFNGAALTTSAKSSSAMKMSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI) HSP 1 Score: 295 bits (756), Expect = 2.650e-90 Identity = 146/197 (74.11%), Postives = 166/197 (84.26%), Query Frame = 2
Query: 101 AFNGAALTSAKASNSAMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
AFNGAA+ + S+SAMKMSFESEIGAQPP+GFWDPLGL+ DADQERF+RLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLS N++F D+PNG+AA SKIPP G QI IG EL V+K VE SFPGD T GGN F S+WD SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL GA Y FN
Sbjct: 181 AFNGAAVATPAKSSSAMKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE) HSP 1 Score: 283 bits (724), Expect = 2.220e-88 Identity = 137/181 (75.69%), Postives = 154/181 (85.08%), Query Frame = 2
Query: 149 MKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
MKMSFESEIGAQPP+GFWDPLGL+ DADQERF+RLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLS N++F D+PNG+AA SKIPP G QI IG EL V+K VE SFPGD T GGN F S+WD SEET+ASKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL GA Y FN
Sbjct: 1 MKMSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY) HSP 1 Score: 277 bits (709), Expect = 3.850e-86 Identity = 136/182 (74.73%), Postives = 154/182 (84.62%), Query Frame = 2
Query: 146 AMKMSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
AMKMSFE EIGAQ P+GFWDPLGL+ADADQERF+RLRYVE+KHGRIAMLA+AGHLTQQN RLPGMLS N++F D+PNG+AA SKIPP G QI IG EL V+K VE SFPGD T GGN F S+WD SEET+ SKRAIELNNGRAAQMGILA+MVHE+L+N+PY+INDL GA+Y FN
Sbjct: 1 AMKMSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Match: D7FIR0_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIR0_ECTSI) HSP 1 Score: 268 bits (685), Expect = 5.340e-82 Identity = 142/223 (63.68%), Postives = 174/223 (78.03%), Query Frame = 2
Query: 35 MKTACCMAV---ACAAGAQAFVAPSAFNGAALTSAKASNSAMKMSFESEIGAQPPIGFWDPLGLVA-DADQERFDRLRYVEIKHGRIAMLAVAGHLTQQNVRLPGMLSFRDNIAFEDVPNGLAAFSKIPPLGTLQIILAIGVHELFVVKQVEDSFPGDCTTGGNIFQSAWDNFSEETKASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYKFN 691
MKTAC MA ACAA A AFVAPSAF GA+LT+AK ++S+MKMSFE+EIGAQ PIG+WDPLGL+ D QERFDRLRYVEIKHGRIAMLA+ GH+T QN R PGML+ +++F D PNGLAA SKIP G +QI L IG E V+ Q E SFPGD + N F+ W++++EE +A+KRAIELNNGRAAQMGIL +MVHEQ++N PY+IN++ G+ +FN
Sbjct: 1 MKTACAMAAGVAACAATASAFVAPSAFKGASLTAAKPASSSMKMSFETEIGAQAPIGYWDPLGLLTKDPSQERFDRLRYVEIKHGRIAMLAILGHITAQNFRFPGMLAPSADLSFADCPNGLAAISKIPLYGLIQIFLFIGFLETKVMLQKEGSFPGDMSLI-NPFEKEWESWTEEEQATKRAIELNNGRAAQMGILGLMVHEQINNTPYVINEILGSHVQFN 222 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig21.119.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig21.119.1 >prot_P-littoralis_Contig21.119.1 ID=prot_P-littoralis_Contig21.119.1|Name=mRNA_P-littoralis_Contig21.119.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=220bp MKTACCMAVACAAGAQAFVAPSAFNGAALTSAKASNSAMKMSFESEIGAQback to top mRNA from alignment at P-littoralis_Contig21:461280..465687+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig21.119.1 ID=mRNA_P-littoralis_Contig21.119.1|Name=mRNA_P-littoralis_Contig21.119.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4408bp|location=Sequence derived from alignment at P-littoralis_Contig21:461280..465687+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig21:461280..465687+ >mRNA_P-littoralis_Contig21.119.1 ID=mRNA_P-littoralis_Contig21.119.1|Name=mRNA_P-littoralis_Contig21.119.1|organism=Pylaiella littoralis U1_48|type=CDS|length=660bp|location=Sequence derived from alignment at P-littoralis_Contig21:461280..465687+ (Pylaiella littoralis U1_48)back to top |