mRNA_P-littoralis_Contig209.71.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig209.71.2
Unique NamemRNA_P-littoralis_Contig209.71.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig209.71.2 vs. uniprot
Match: D8LSL7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSL7_ECTSI)

HSP 1 Score: 131 bits (330), Expect = 3.780e-37
Identity = 74/113 (65.49%), Postives = 79/113 (69.91%), Query Frame = 1 
Query:   82 MVRLVEGHIVADDEGGDSTDGLLSGLLRCRGGTTINFLGFRVPLYWSCVAAVFALLRFGAPGLLFVAVVAGASHFACRDDGSGESSGGR--RPFARGSNIRGIGDLPRPPPSS 414
            MVRLVEG IVA+DE  D   G L GLLRCR   TINFLGFRVPLYWSCV  VFA L+FG  GLLFVA  AGAS +AC              RPFARGSN+RGI DLP+PPPSS
Sbjct:    1 MVRLVEGQIVAEDE--DGAGGWLRGLLRCR---TINFLGFRVPLYWSCVIVVFAGLKFGIFGLLFVAAAAGASQYACNXXXXXXXXXXXXXRPFARGSNVRGISDLPKPPPSS 108
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BLAST of mRNA_P-littoralis_Contig209.71.2 vs. uniprot
Match: A0A7S2A9X7_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9X7_TRICV)

HSP 1 Score: 52.4 bits (124), Expect = 4.460e-6
Identity = 35/104 (33.65%), Postives = 49/104 (47.12%), Query Frame = 1 
Query:   97 EGHIVADDEGGDSTDGLLSGLLRCRGGTTINFLGFRVPLYWSCVAAVFALLRFGAPGLLFVAVVAGASHFACRDDGSGESSGGRRPFARGSNIRGIGDLPRPPP 408
            +G ++++ E   +  G   GLL  R G  ++  GF +      V  V A L  G  GLL      GA     R   S +  GG    + G+NIRG+ DLP+PPP
Sbjct:   10 DGTLISEGEESAAPPG---GLLSLRSGQNVDAFGFNLEPRQFVVVLVLAALMLGGTGLLAFVFSLGAYSLFRRVASSEDGRGGGEHRSAGANIRGVKDLPKPPP 110
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.71.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSL7_ECTSI3.780e-3765.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2A9X7_TRICV4.460e-633.65Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig209contigP-littoralis_Contig209:382678..389949 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size417
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-09_002120.1
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790016.3256354-CDS-P-littoralis_Contig209:382677..3827301680790016.3256354-CDS-P-littoralis_Contig209:382677..382730Pylaiella littoralis U1_48CDSP-littoralis_Contig209 382678..382730 -
1680790016.3346975-CDS-P-littoralis_Contig209:383118..3831901680790016.3346975-CDS-P-littoralis_Contig209:383118..383190Pylaiella littoralis U1_48CDSP-littoralis_Contig209 383119..383190 -
1680790016.3464782-CDS-P-littoralis_Contig209:389657..3899491680790016.3464782-CDS-P-littoralis_Contig209:389657..389949Pylaiella littoralis U1_48CDSP-littoralis_Contig209 389658..389949 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig209.71.2prot_P-littoralis_Contig209.71.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig209 382678..389949 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig209.71.2

>prot_P-littoralis_Contig209.71.2 ID=prot_P-littoralis_Contig209.71.2|Name=mRNA_P-littoralis_Contig209.71.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=139bp
MWALVQHRSTGPFTLLVLIAPQQFLTAMVRLVEGHIVADDEGGDSTDGLL
SGLLRCRGGTTINFLGFRVPLYWSCVAAVFALLRFGAPGLLFVAVVAGAS
HFACRDDGSGESSGGRRPFARGSNIRGIGDLPRPPPSS*
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mRNA from alignment at P-littoralis_Contig209:382678..389949-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig209.71.2 ID=mRNA_P-littoralis_Contig209.71.2|Name=mRNA_P-littoralis_Contig209.71.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=7272bp|location=Sequence derived from alignment at P-littoralis_Contig209:382678..389949- (Pylaiella littoralis U1_48)
ATGTGGGCTCTAGTCCAGCACCGCAGCACCGGCCCTTTTACTCTTTTGGT
GCTCATCGCCCCCCAACAATTCCTCACAGCCATGGTACGCCTGGTGGAGG
GCCATATTGTGGCCGACGACGAAGGCGGCGATTCTACGGACGGGCTCCTT
AGCGGGTTGCTCCGCTGTAGAGGTGGCACGACGATCAACTTTCTCGGCTT
TCGCGTCCCACTCTACTGGAGCTGTGTTGCCGCAGTCTTCGCTCTGCTGC
GGTTCGGTGCTCCGGGGCTGTTGTTCGTGGCGGTAGTTGCAGGTAAGGCA
AGCCGGAAATCGATTCCGGAATCTGACCATTGATCAGCGGCGGGCGCCAT
GAGCGACGCCTTGTCGTTAGTTATTGGACGGGTGCTGCATTTCCCTTGTA
TTTTATATTTTCAAGCAGGATATCATACAGCAGTCGGCGGTGCTGGTGCG
GCGTGAAATGATTCGATTGCACTGTTCATCTCGCGACTACTTGTACAGCA
GGAGTACGCGATACTGCTGTACGCTGGACACACCAAGGATTGCTCTCAGG
TTCTGTCGGCGTGTTCTCTTTGTGTGATATGGGGTGCGGAGGTGCACCCA
GTTGCTCTCTCTCGAGAGACCGGGAAACCAGTTGCTGTACGAGTCCAAAT
ATACGAAGTGCTTCGGAGTCTGAAAATATCACATTTCAGTAAGAGCCCAG
CCCGTATTAACCCTTTGAACCCCCTATTCCCCATTGGGGACAATTTGGGG
ACACCTGTTTTTTTTTTTCGTGACTTGGGCTTTGAAGGCGCCTATCTACA
GGTATTTTGGGTGTGGTTCCGTGTGCTCGATGGAATGTTTGTGGATCGAC
CAATCGTTGGCTGCCTCGGTGCCACATTTAGTTTTTTATTATTATTATTG
GAGAGCAAGCGCGCCCGACAGCATAGTAGACACAACGGCGATCATTGTAT
CACACTTTCTTCATGCCGGCAACCTCCCTGCTGCATTGCACACAACATGC
ACACATACACGTGACCTCGTCGATGGGCCTAGCCTGTAGTTTGAACCGCA
GGGTGCAGACTAGTGTGCCAGAGAATATGGGATGATAACACACGCACATA
AGACATGATACACAGACTATGTTATACCTGGTACCACTGTACCGCTCCTA
TGAAACGCTGATGATGCTGACGTACTTCTGCACTCACATACATACCCTGA
TTTCTGCAACTATTATTGTTCTCTGCTTCTGCTGCTGCTGTGTGCATGCT
GCAGCAAGCACCTAGCTGATGATGTGTCGTGCGGTGGGTTGGTCAGGCAC
ACACCACGCACACGGGGGCCGACACTACAAACAGACACATCGCGCCACGC
ACGTTTGAAAGCTCGTAACTTACCCGGCGATCTCGTACGAGTATCATCAC
ATGGGTACCATTACATGCCGACACCCTTGCGTTGATCACATGCAAGATGG
TGATATGTTTGACTTCAGAGGCTAGTGCATCTGCTGCTTGCTGCTGATGA
TGACGAGACGCTGTAGACCCTGAATGAATGTTGCGGAGTGGAACCCTGTG
TGGTTGTCGAGCGGGGTACCCTCATCTGCCATTCTAAGTGGCGGTATTGC
TGCGTGCTACCTTGCATACAGCAGTATCCCTTTGAAGCAACATCCTGTAA
AACTAAACAAACAACTTTTGTGTAGTTGACCCCCCCAAAAAAGTTTGGTG
TACAGTAGCTTTAGACTGAAATCTTTCTCCATTTTTTTCAGGGCAAATTG
GGGACAGATTTCTGTGTATAATCAAGTCACACCCCTTTTTTCACCCGAAG
AGAGCAGGGAGTCAGCGAGACATCAGTACTTTTTTTTTTGAGACTGTCGA
CCATTCGCCAATCATCGGTGCACCGAAATCAGTTAATTTTTGGCTCCAAG
ATTAGTTTTTTCAAACCCTTGGGGGGTCAAAGGGTTAACGGGGAATTGAC
AAAAACGAAATTGCGAAAAAGAAAACGAAAACGAAATAACTTCGTTCTTC
TGTAAATAAAAAAATACTAGTTGTTGAGTATTAACTGAACGAGCATCCTC
TTGTTTTTTTTTCACGCTGCTGAGCGAACCTGGTACCAGGGTGGAGAAGA
AGAGGAGCAGTACACCAGCGGACACCTTTTGCGATGACTTTTGATATTTT
TTGGATGGCTGATCGCTTGTTTCCCGTCACGCTCGATACTCACCGACCCC
AACCCTTGGGTGTTCCCGATGGACATTAGACCCATCTCTCTAGGCACGCA
GTTGGTAGGGAATTTCATCCGTTTTCCGGCGAGATATCAGTGGAAACGTA
AACTTGGCTGCTTGCGAACTCACCCGAAAAAGCGGCTCAAAGCAAAAGCG
GGTCGTTGTGCACGAGTTGAAAACTTTTTTCGCGTCACGCTTGACACCCC
ATTGCCCCAAACCTTGGGCATTCCCAATTCACTTCAGACCCACCTCTCTA
GACATGCAAATAGCAGGGAATTTCGTCGCTTGTGTCGCGAGTTATCAGTC
AACGTGTGAACTTGTCTGCTGTACAAAAGTCTACCGGGGATGCCTCGCAG
AGCTGAAGCGTCCCCGCCTACAAGCCTAGGAGGCGGTATTTCGTTTTCGT
TTTCGTTTTCGCAAAAAAAAAAGGTCCAAAACACTTTATTTTCGCGAAGA
AAAAAACGAAATACCGCCTGCTCGGTGTGTGCTGAATCGGAGACACGTCT
CTTTCAAAAGAAAATAACGCCTCTTTCTCTTCTTTTCTTGGACCAATCAG
AGCCCAATTTCGTTTTCTTTTTCGCAATTTCGTTTATTTTCAATTCCCCG
TTAATCCGGGCCCTTACGCTTTGAGAACTATCTACCCTTTGCCGAAGGAG
GGAACGTTCTGGGAACGTTCCGAGAACCCAATGAACGGGATTGAATCTGA
TCTGGAAGAGCACGCCGTCAGGATCTCCGGCGGGCCATTTGATGCCTTCA
CAATCTACGGTCATTCTGTGTGGCATTTACAGCTTCGTGTATTCGAAGTA
CAATGTAGATCTGCAGCGATTAAATACCGGTATTATTTTTGGAAATCACG
TTGGGGCCAGCACCTCTCGTGAACATCGTCCAGAGAGCAGACAGCCCCCC
CCGTGACACGCATGGGTTCAAACGAACTCGTTTTTAGAGTCCGATAACTA
TCAGGGTGAGAGCCTGTATTAACTCTATGTAATGAGAAAATCATGCAGCA
TGTTATCGGAATACTTCGAAGTATGACTTTACGAGAAACCCTTCAAGCCA
TATTAACGAAAAAGCTAGAACAAGCTGTTTGAAGGCCTAAACAAGCCAGC
AGGATGAAAAACCTCTGATGATGATGGCACGACGGGTACTGTTGTAAAAC
AGAACAATATGATATAATTCGAAGTGAAATAGGCGTCCTCACGTATGCAT
AGAGGCACGGTCGTGGGCTCTGTGCATCAAGGTTGCATGCTGAGAGACGT
GCGGTGTGTTTGTGTGCGTGTTGGCTCATGCACGCAAGACTGCTGTGTCA
TACGGCTGTCTCCTGTGGGCTGTGAGAGGCGGCCTTGTGACGTGCTTGGC
GTGTGTGGTGTGTGTAATGGCTCGTCACCATGCAAACTGCTGTGTTTAGC
CGTTGCGCTATCGTAGTGCTGGCGTTGGCTTGCCTGATGCAACGGCAAAC
CTCTCTGCCATGCTCTGTGGCGGCACTGCTGTTGGTTGCTTCGGTGTGGT
CTAGCTTACCTGTCTGCCTGTCTATGGTGCGCGAGGCACGTCGTTCAGAA
AAACTTCGATCGGGTACAGACCCCGAGTGATGATAACGATTTTCTGTCGA
TTAAGTATTTTTGGACTTCTTTGGTCGGCCGGTGATGTCCAAAAAACCAT
AGGCGTCGTCCGGAGGTTTTGAGAGCCTCGGCCAGTCAGAGACCATTTAT
GATTATTCTTTATAGAAATTATGATTTTCCGACAAGTGTTAATGCAGGGC
CTGAAAGCACTGCCCGCGGGGTATCATAGCGCTCCAATTATTTAATTTCC
CGATCACCAACATCGAGATGTACACCGAGCGCCACAGCCCCTTTTGGACA
ATTTGTTAGTTGTATTGTAGGATTCTTGCCCATGCTGTAGCTTTGTTGAG
GTCAGCGCTGACTGCCTCAGCAGAGCAACAGCAGCGGTATCTAGAGCGCG
TTACTCCCCCAACTGGGAGTGCTTCGCTCGCGCTCTGTGCCATGGCGTAA
AAGTTCGCGATATTTCTTCGAAAATGCAGAAAAGTTACCAGCGTTCGGGT
GGGCAGCAGGCAGAGGGAGGGTGGTCTGATTAACCCAGCCTCGGGTTGCA
GAGTAACCCTTCCTCGAGTCGTCAGCTAGGATAGATAAGCACACCTTTCA
TGTATGTAGGCCGTGAGCCGCCAGCACTCTGATGTCTGTGTGTCTGTTGT
TTGATCTTCGTTTTTGTCTGGAGGACGCACGGCAATACATTATTTCTTTA
CGTCGAGCATGGACCCGTCGCGGATGGCCATTATTGTTGATGATAAGACG
TACGAAGTGTGTGATGCAGCAGTACAGAGTAGTTTTATTTCGTCAGCCGG
TCGCATTCCAGTCACACCCCTCTTTATGGTCGCCATATCTGGCCGTCAAA
AGTAAAAGTTTGCTCAAATGTCAAACAACATTTAGGAGGCAGATGTCCAC
TTTTCGAAGATATCGTCCCGCTGTTTACGGAGAAAAACATCTTGTTTCGT
GGATCTTCCAAATGCGCGGCGAAATGTTGGGTCTCTTTTGTTCTTCTATT
CCTTTTTTTTGTCGGAAGTTCGCAGGCCCAAGGCCCAAACGTGCGTGTGA
GTCTGGCACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTTGAAGATT
GAAGATTGAAGGCAACATGAGAACATCGCAGTCACTTTCTTTCTCACTAC
ACCACCTATCAAGGTCAAACCTTTCCGGCTGTCACCTCTATTCACCGGTC
TTTTGTCAAAAGGGTGTAGGGGTAGCCGTGCATCCGTTCAATCGGCTGAG
AGAAGCATCGTTCCTGGGTCAGACTTGCCAAACTGAAAATACAGTCTATT
TTCCTCATTTTTATACTTCGAAATAGAGCCCACAATGTTGTACCTCGGAA
ATGATTCTAAAAGCAGATGTTCGATACACAGCACAGCGAGCGATGATTCT
CTCTGCTGCGATTGCATGAGCCCACGGCCAGCTCAAAGTCTTGCTGAAGG
ACAGCAATGAATGGAAATGGTAGCCAACAAGGTTTCATCATGACTGGTGG
TCAAGGGAGCAAGAACACAACTGCTGTGGTATTCTGATATCTCGCCTTCA
ACACTGCTGCTGCTGCTGCTGCTGCTGCTCTGAGCCTGAGGTTTCACACG
CACGCCAGTCCACACATGCCTACCTTTTCAAGAGCTTATTGAATGTTTTT
TTTTTCCATTCCTGGCCAGCTTCCGCCACATACCAGCAGTAGAGGCGTTG
GCACAGTGACTTTAGGGTTTCACAGAGCCTTTCACCAGCTCGCTGCGTTC
AGATTCCATGGCGTAGTGGCTGGTGTTGCCTGCTGAAGCGTGGTGGTGTA
TCGTAATCTCACCGCTTCCAACAAGATATGTGCGACTGCTGGGATGGTCA
GATGTTGAGCCAACTTTTACCGATTTGGTCCAGTTTGGGCCGGTTTGGAA
AATTTTAACGACATTTCGGACGACATATTTACCCGTAGGCAGTGAAATAG
ATCTTGATTTGAAAAAATTTACAAACCTTTACTTTTGACGTCCAGGTATG
GCGACCGTAAACATGGGTGTCAGCATGGATTCTTGGGTTCACTTGAAGTG
TTTTCGGTGGACCAAGGCGAGAATGGTGAGAGCCGACGGATTCCGCAGAA
TATGAATGTAGAACGTGGCGCGATCGGTGTGGTATTTGACCGCCGTCCCT
GAGTGCCGCGAGTGTGCGAAAGACAGTACAGTGTCAACATGACGACCGAG
ACAAGAAAAGCGAAATACAAAAGCCGCACAGCAGTAGTGCAAAAGCAAAA
CTGTTGTGTCCAAAATTTCCTCAAGACAAAATTGGCATCAGGTGTGACGT
ACCGCTGTACTTTAGACTGCGCTGTGTGTACGAAGAAAAAGCGTTCGTCA
GACTTTTGAATATTCAAAATATCAAAATATCCGTATGGTATGGGAATTGC
ATGACATTGCGCAATTGTGCCAACCCGGGACAGTTGATGCAAAGGGTGTT
CTCAGAGCAAACATTCGAAAAGAGGGGGGGGGGGACTATGCACTACAACC
TTTAACAACAATTCCCAACGCTCCACGAAAAAAGGAAGTCAAGCGACAAA
GGTCGTGCACATTACTTTATTATTTTCCCTTCTCTGGCATGCCATGCTCC
GGCACTTGTGCTGCAGCAGTAGCAGCCGCACTCGTCAGTATTCCATGTTA
ATTTCCAAGGGAGTAAGCCGCGAAGTTGCCTGTCCGTCGTCGTAACCCTC
CGACTTCCGCTAAAAACACGACTTGATTCTTGGGCATCAAAGGCACATAC
CGCGGCCACCTTCTGTATGCGACCCGGGCTGTATGCCGCCGTGTGCCAGA
GAGGATGGGGGAGAGAGAAAACAGAGATAGAAGCAGCTCGATAGCAACAC
ACAGGACGAGGAGATTATCAAAAAAGTAATAAACGTGTCTCGCATAACGA
CGTCACAAGTCCTGTTAGTATTTGTTCACGTCTCTCACGCATGAGCGCGT
GACGCACCGTGCGTGTCCGACCTGTCGTTGTCGGTGCATCTATCTTGACT
TACTCACAGGTGCGAGCCACTTCGCTTGCAGGGATGATGGTTCGGGCGAG
AGCAGCGGCGGACGTCGACCGTTCGCGAGAGGTAAGATCAGGCACCACAA
CGAAGAGCAGTAGTCGACGACCACACGAGTGGATTCCATCTCAATACTCC
CGCAGACCCCAACGAAATGCACGTTGCCTTCAGCGAGTTGCGTAAATGTG
AGGGTTCTAACATACCGGAAGGGAGTAGACATCAATGAGGCGTTCTGTTC
TTGTTGTCAAATGCGCGCGATGCGCCGCACCTATGCGTGTGTTCATGTGT
TGTTGCGGCTTCCGCCGTTTGACCCCAACGTCTCACTTTCTTGTTGCGTC
TTCACGACCGCCTTCGACACCGCGACTGCCGCAACCCCCACCCCCACCAC
CACCGCGATGTCTCGGTTCGTGCTGCGCACGCATGCACGTACACATCTAT
CGCCCTCCGGCAGGGTTAGGGTCGAACATCAGGGGCATAGGAGACCTTCC
TAGGCCTCCCCCGTCCAGCTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig209:382678..389949-

>mRNA_P-littoralis_Contig209.71.2 ID=mRNA_P-littoralis_Contig209.71.2|Name=mRNA_P-littoralis_Contig209.71.2|organism=Pylaiella littoralis U1_48|type=CDS|length=417bp|location=Sequence derived from alignment at P-littoralis_Contig209:382678..389949- (Pylaiella littoralis U1_48)
ATGTGGGCTCTAGTCCAGCACCGCAGCACCGGCCCTTTTACTCTTTTGGT
GCTCATCGCCCCCCAACAATTCCTCACAGCCATGGTACGCCTGGTGGAGG
GCCATATTGTGGCCGACGACGAAGGCGGCGATTCTACGGACGGGCTCCTT
AGCGGGTTGCTCCGCTGTAGAGGTGGCACGACGATCAACTTTCTCGGCTT
TCGCGTCCCACTCTACTGGAGCTGTGTTGCCGCAGTCTTCGCTCTGCTGC
GGTTCGGTGCTCCGGGGCTGTTGTTCGTGGCGGTAGTTGCAGGTGCGAGC
CACTTCGCTTGCAGGGATGATGGTTCGGGCGAGAGCAGCGGCGGACGTCG
ACCGTTCGCGAGAGGGTCGAACATCAGGGGCATAGGAGACCTTCCTAGGC
CTCCCCCGTCCAGCTGA
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