mRNA_P-littoralis_Contig209.65.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig209.65.1
Unique NamemRNA_P-littoralis_Contig209.65.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 436 bits (1120), Expect = 2.700e-131
Identity = 219/290 (75.52%), Postives = 244/290 (84.14%), Query Frame = 3 
Query:  453 MGVAGLTGYVNNNLKGAVAMEDLRKGDTLAIDGAGWMFRLLLGQRVDHGGDYDLFHKTIVREVTRIREAGLNLLVFMDGPNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFERCRYIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAELCGISEQQVVEWAILMGNDYTRELSLPAIGFGNHKHRRPGKTLEYVRMIGPNVKIEQSETVFVRR 1322
            MGVAGLTGY+N NL+GAVAMEDL++GDTLAIDG+GWMF LL GQRVDHGGDYDL HKT+VREV R+R+AGL LLV+MDGP RKMKAAT+ERRR ++GEK ANLY YTLDGGG+FVG G  PD S  AFPLP LAQRQFYASLRT GVKIVECPGEADQE+AKASAED TGRTFAVGSDSDF +FERCRY+HFDDL L     +G  D    VAQARVWTR RLAELCGISE+QVVEWAILMGNDYTRELS   IGFG+H+ RRP KTLEYV+ +GP V +++     VRR
Sbjct:    1 MGVAGLTGYINKNLRGAVAMEDLQEGDTLAIDGSGWMFHLLEGQRVDHGGDYDLLHKTVVREVGRLRQAGLKLLVYMDGPTRKMKAATRERRRGQDGEKLANLYAYTLDGGGSFVGPGQAPDLSAEAFPLPKLAQRQFYASLRTTGVKIVECPGEADQEIAKASAEDGTGRTFAVGSDSDFLIFERCRYVHFDDLVL-HRREEGDGDGGG-VAQARVWTRTRLAELCGISERQVVEWAILMGNDYTRELSFRVIGFGSHRRRRPEKTLEYVQSMGPGVTLDERIERTVRR 288
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: A0A0L0H4V5_SPIPD (Uncharacterized protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0H4V5_SPIPD)

HSP 1 Score: 87.4 bits (215), Expect = 5.220e-14
Identity = 76/270 (28.15%), Postives = 111/270 (41.11%), Query Frame = 3 
Query:  585 RVDHGGDYDLFHKTIVREVTRIREAGL--NLLVFMDGPNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVG-VGMPPDRSVGAFPLPMLAQRQFYASLR------------------------------------------TAGVKIVECPGEADQELAK-------------ASAEDETGRTFAVGSDSDFFVFERCRYIHFDDL-KLPDNNVDGT-----VDAKERVAQARVWTRERLAELCGISEQQVVEWAILMGNDYTRELS 1202
            R ++GG Y  F   + REV  ++  G+  ++L + DG   + K AT E R  ++ ++++NLY Y       F G    PP + V  FP+P L   QF  +L                                           TA + IV+C  EAD E+A+                    GR +  G DSD+F+   C YI F  + +    N DG+           V    VW RE +A +  ++E Q+VE  IL+GNDYT E S
Sbjct:  143 RREYGGAYRAFDSFVRREVRYLQSLGVFESILFYFDGEMLQAKHATHEERVLQKEQRWSNLYRY-------FCGRTSTPPAQEV--FPMPPLIFEQFLRTLEAITRENELEVDLADEFDRLTISQTAAGGTVEESVSPSSFACPTAKISIVQCKVEADIEIARDVELWNEQSSASSCGGASPPGRAYCYGEDSDYFLMRGCPYIRFGRISERQPFNADGSNAVLVSHQPHHVVALEVWRREEVAAMLSLTESQLVELGILIGNDYTMEYS 403
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: A0A672YEV2_9TELE (Asteroid homolog 1 n=1 Tax=Sphaeramia orbicularis TaxID=375764 RepID=A0A672YEV2_9TELE)

HSP 1 Score: 79.7 bits (195), Expect = 8.590e-12
Identity = 77/260 (29.62%), Postives = 117/260 (45.00%), Query Frame = 3 
Query:  453 MGVAGLTGYV--NNNLKGAVAMEDLRKGDTLAIDGAGWMFRLLLGQRVD--HGGDYDLFHKTIVREVTRIREAGLNLLVFMDG---PNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFER------CRYIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAELCGISEQQVVE-WAILMGNDYT 1190
            MGV GLT +V  N NL   V   D R    L IDG    FRL     +D  HGGDYD F   + +  + +    +   V +DG   P+ K  A  ++R + +  E  +  +G                  SV    LP+L +  F   LR  GV +V+CP EAD E+A  + +    +   + +DSDF++F+         + H+        N++G   A +R   AR +T   L    G   Q+++  +A+L GNDY+
Sbjct:    1 MGVQGLTTFVEGNRNLLPNVKFRDSR----LVIDGCSLYFRLYFNSGLDQVHGGDYDAFTSLLTQFFSALAACNIQPYVVLDGGMDPSDKKFATLRQRLQSKIKEADSLCHGR---------------HGSV----LPILTRDVFIQVLRQLGVPLVQCPAEADWEIACLAHQ---WKCPVLSNDSDFYIFDLPGGYLPLNFFHW-------TNLNGK--ASQRYISARCYTASGLCRWFGSMNQELLPLFAVLNGNDYS 225
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: UPI001FB5BCEE (protein asteroid homolog 1 n=1 Tax=Mugil cephalus TaxID=48193 RepID=UPI001FB5BCEE)

HSP 1 Score: 78.2 bits (191), Expect = 2.550e-11
Identity = 76/258 (29.46%), Postives = 115/258 (44.57%), Query Frame = 3 
Query:  453 MGVAGLTGYVNNNLKGAVAMEDLRKGDT-LAIDGAGWMFRLLLGQRVD--HGGDYDLFHKTIVREVTRIREAGLNLLVFMDG---PNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFER------CRYIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAELCG-ISEQQVVEWAILMGNDY 1187
            MGV GLT YV  N       +D++  D+ L IDG    +RL     +D  HGGDYD F   +VR ++ + E  +   V +DG   P+ K  A  ++R + +  E  +  +G                    G   LP++ +  F   L   GV +V+CP EAD+E+A  +          + SDSDF++F+        ++ H+D       N++G   A  R   AR +T  R     G I    +   A+L GNDY
Sbjct:    1 MGVQGLTTYVEGNKH---FFQDVKFRDSRLVIDGCSLYYRLYFSHGLDQQHGGDYDAFTLLLVRFLSALAECNIQPYVVLDGGMDPSDKKFATLRQRLQSKIKEADSLSHGR-------------------GGCILPIVTRPVFIQVLIQRGVPLVQCPAEADREIACLAHH---WNCPVLSSDSDFYIFDLPGGYFPFQFFHWD-------NLNGK--AFHRYISARHYTTSRFRGTHGGICSNMLALSAVLTGNDY 224
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: A0A3B4BKL9_9GOBI (XPG_I_2 domain-containing protein n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=A0A3B4BKL9_9GOBI)

HSP 1 Score: 76.6 bits (187), Expect = 5.590e-11
Identity = 73/258 (28.29%), Postives = 118/258 (45.74%), Query Frame = 3 
Query:  453 MGVAGLTGYVNNNLKGAVAMEDLRKGDT-LAIDGAGWMFRLLLGQRVD--HGGDYDLFHKTIVREVTRIREAGLNLLVFMDG---PNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFER------CRYIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAE-LCGISEQQVVEWAILMGNDY 1187
            MGV GLT +V  N      ++D++  D+ L IDG    F L     +D  HGGDYD FH  + + ++ +    ++  V +DG   P+ K K  T  +R + + +   N+                   RS     LP+L +  F   L  +GV +V+CP EAD+E+A  + +        +  DSDF++F+         Y H+        N++G   A +R   AR++T   L     G+++  +   A+L GNDY
Sbjct:    1 MGVQGLTTFVEGNRH---FLQDVKFRDSRLLIDGCSLFFYLYFNHGLDQQHGGDYDAFHCLLGQFLSALAACNIHPFVVLDGGMDPSDK-KLNTLRQRLESKIKMADNI------------------SRSRHGSVLPLLTKEVFIQVLIQSGVPLVQCPSEADKEIACLARQ---WNCPVLSRDSDFYIFDLPGGYIPLNYFHW-------TNLNGK--ASQRYISARLYTTSALCRWFGGLNKDLLPLGAVLAGNDY 224
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: A0A8C4HKE4_DICLA (Uncharacterized protein n=2 Tax=Moronidae TaxID=42148 RepID=A0A8C4HKE4_DICLA)

HSP 1 Score: 77.0 bits (188), Expect = 5.800e-11
Identity = 73/259 (28.19%), Postives = 124/259 (47.88%), Query Frame = 3 
Query:  453 MGVAGLTGYVNNNLKGAVAMEDLRKGDT-LAIDGAGWMFRLLLGQRVD--HGGDYDLFHKTIVREVTRIREAGLNLLVFMDG---PNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFER------CRYIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAELCG-ISEQQVVEWAILMGNDYT 1190
            MGV GLT YV  N      ++D++  D+ L IDG    +RL     +D  HGGDY  F + + + ++ +    +   V +DG   P+ K  +  ++R++ +  E  +  +G                + SV    LP+L +  F   L   GV +V+CP EAD E+A  + +    ++  + +DSDF++F+        R+  +        N++G   A  R   AR +T +RL  L G I+++ +   A+L GNDY+
Sbjct:    1 MGVHGLTTYVEGNRH---LLQDVKFRDSRLVIDGCSLYYRLYFNNGLDQQHGGDYGTFTRLLTQFLSALAACNIQPYVVLDGGIDPSDKKFSTLRQRQQSKIREADSLSHGR---------------NGSV----LPLLTRNVFIQVLIQRGVPLVQCPAEADWEIACLAHQ---WQSPVLTNDSDFYIFDLPGGYLPLRFFQW-------TNLNGK--ASHRYISARCYTTKRLCGLFGGINQELLPLCAVLTGNDYS 225
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: UPI00145B17E1 (protein asteroid homolog 1 n=1 Tax=Periophthalmus magnuspinnatus TaxID=409849 RepID=UPI00145B17E1)

HSP 1 Score: 76.6 bits (187), Expect = 7.470e-11
Identity = 73/258 (28.29%), Postives = 118/258 (45.74%), Query Frame = 3 
Query:  453 MGVAGLTGYVNNNLKGAVAMEDLRKGDT-LAIDGAGWMFRLLLGQRVD--HGGDYDLFHKTIVREVTRIREAGLNLLVFMDG---PNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFER------CRYIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAE-LCGISEQQVVEWAILMGNDY 1187
            MGV GLT +V  N      ++D++  D+ L IDG    F L     +D  HGGDYD FH  + + ++ +    ++  V +DG   P+ K K  T  +R + + +   N+                   RS     LP+L +  F   L  +GV +V+CP EAD+E+A  + +        +  DSDF++F+         Y H+        N++G   A +R   AR++T   L     G+++  +   A+L GNDY
Sbjct:    1 MGVQGLTTFVEGNRH---FLQDVKFRDSRLLIDGCSLFFYLYFNHGLDQQHGGDYDAFHCLLGQFLSALAACNIHPFVVLDGGMDPSDK-KLNTLRQRLESKIKMADNI------------------SRSRHGSVLPLLTKEVFIQVLIQSGVPLVQCPSEADKEIACLARQ---WNCPVLSRDSDFYIFDLPGGYIPLNYFHW-------TNLNGK--ASQRYISARLYTTSALCRWFGGLNKDLLPLGAVLAGNDY 224
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: UPI001F083738 (protein asteroid homolog 1 isoform X1 n=3 Tax=Hypomesus transpacificus TaxID=137520 RepID=UPI001F083738)

HSP 1 Score: 76.6 bits (187), Expect = 7.920e-11
Identity = 79/254 (31.10%), Postives = 116/254 (45.67%), Query Frame = 3 
Query:  453 MGVAGLTGYVNNNLKGAVAMEDLR-KGDTLAIDGAGWMFRLLLGQRVD--HGGDYDLFHKTIVREVTRIREAGLNLLVFMDGPNRKMKAATKE----RRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFERCR-YIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAELCGISEQQVVEW-AILMGNDY 1187
            MGV GLT YV  N +     +D+R K   L IDG    FRL     +D  HGGDYD F   +   ++ +    +   V +DG    M A+ K+    R+R +   K A+   +                    A  LP+L  R F   L   GV +V+CP EAD E+A  +  +E G    + +DSDFF+F+    Y+ F   +  + N  G     +R   AR +T  RL +  G   ++++   A+L GNDY
Sbjct:    1 MGVHGLTSYVEGNRE---FFQDVRFKESRLIIDGCSLFFRLYFNYGLDQQHGGDYDAFSGLLSEFLSALSACRIQPYVVLDGG---MDASDKKFSTLRQRLQSKIKEADSLAHGRH-----------------ASVLPLLTSRVFVQVLSQQGVPLVQCPAEADLEIACLA--NEWGCP-VLTNDSDFFIFDLPGGYLPFRFFQWTNVNGKGP----DRFISARCYTVNRLCKRFGGMNRELLPLCAVLAGNDY 224
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: A0A6P7KJ66_9TELE (protein asteroid homolog 1-like n=1 Tax=Parambassis ranga TaxID=210632 RepID=A0A6P7KJ66_9TELE)

HSP 1 Score: 75.9 bits (185), Expect = 1.340e-10
Identity = 76/253 (30.04%), Postives = 119/253 (47.04%), Query Frame = 3 
Query:  453 MGVAGLTGYVNNNLKGAVAMEDLRKGDT-LAIDGAGWMFRLLLGQRVD--HGGDYDLFHKTIVREVTRIREAGLNLLVFMDG---PNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFERCR-YIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAELCGISEQQVVEW-AILMGNDY 1187
            MGV GLT  V  N       +D++  D+ L IDG    FRL     +D  HGGDYD F   + +  + + +  +   V +DG   P+ K  +  ++R + +  E  +   G+               + SV    LP+LA+  F   L   GV +V+CP EAD E+A  + +        +  DSDF++F+    Y+ F   +   NN++G   A +R   AR +T  RL    G+  Q+++   A+L GNDY
Sbjct:    1 MGVQGLTTLVEGNRH---YFQDVKFRDSRLVIDGCCLYFRLYFNHGLDQQHGGDYDEFADLVTQFFSALSDCNIQPYVVLDGGTDPSDKKFSTLRQRLQSKIKEADSLSRGH---------------NGSV----LPILARNVFIQILIQRGVPVVQCPAEADWEIACLAHQ---WNCPVLSYDSDFYIFDLPGGYLPFRFFQW--NNLNGK--ASQRYIPARRYTTSRLCCSFGVLNQELLSLCAVLAGNDY 224
[Close]
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Match: UPI0018893276 (protein asteroid homolog 1 n=1 Tax=Pungitius pungitius TaxID=134920 RepID=UPI0018893276)

HSP 1 Score: 75.5 bits (184), Expect = 1.720e-10
Identity = 72/258 (27.91%), Postives = 117/258 (45.35%), Query Frame = 3 
Query:  453 MGVAGLTGYVNNNLKGAVAMEDLR-KGDTLAIDGAGWMFRLLLGQRVD--HGGDYDLFHKTIVREVTRIREAGLNLLVFMDG---PNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFVGVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASAEDETGRTFAVGSDSDFFVFER------CRYIHFDDLKLPDNNVDGTVDAKERVAQARVWTRERLAE-LCGISEQQVVEWAILMGNDY 1187
            MGV GLT +V +       ++D++ +   L IDG    FRL   QR+D  HGGDYD F   + +  + +    +   V +DG   P+ K K  T  +R   + ++  +L                   R      LP+L +  F   L   GV +V+CP EAD E+A  + +        + +DSDF++F+         + H+       NN++G   A +R   AR +T   L     G++++ +  +A+L GNDY
Sbjct:    1 MGVHGLTTFVEDKRN---LLQDVKFRNSRLVIDGCSLYFRLYFNQRLDQQHGGDYDAFAGLLTQFFSALAACSIEPYVVLDGGIDPSDK-KFPTLRQRLQSKIKEADSL------------------SRGRNGSVLPILTRDVFIQVLMQRGVPLVQCPAEADWEIACLARQ---WNCPVLTNDSDFYIFDLPGGYLPLNFFHW-------NNINGK--ATDRYISARCYTTNGLCRRFGGMNKELLPLFAVLAGNDY 224
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.65.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LSM0_ECTSI2.700e-13175.52Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A0L0H4V5_SPIPD5.220e-1428.15Uncharacterized protein n=1 Tax=Spizellomyces punc... [more]
A0A672YEV2_9TELE8.590e-1229.62Asteroid homolog 1 n=1 Tax=Sphaeramia orbicularis ... [more]
UPI001FB5BCEE2.550e-1129.46protein asteroid homolog 1 n=1 Tax=Mugil cephalus ... [more]
A0A3B4BKL9_9GOBI5.590e-1128.29XPG_I_2 domain-containing protein n=1 Tax=Periopht... [more]
A0A8C4HKE4_DICLA5.800e-1128.19Uncharacterized protein n=2 Tax=Moronidae TaxID=42... [more]
UPI00145B17E17.470e-1128.29protein asteroid homolog 1 n=1 Tax=Periophthalmus ... [more]
UPI001F0837387.920e-1131.10protein asteroid homolog 1 isoform X1 n=3 Tax=Hypo... [more]
A0A6P7KJ66_9TELE1.340e-1030.04protein asteroid homolog 1-like n=1 Tax=Parambassi... [more]
UPI00188932761.720e-1027.91protein asteroid homolog 1 n=1 Tax=Pungitius pungi... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig209contigP-littoralis_Contig209:364502..371630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LSM0
Preferred nameYTHDC2
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,YTH
Model size1889
Max annot lvl2759|Eukaryota
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
Hectar predicted targeting categorysignal peptide
Exons9
Evalue2.73e-132
EggNOG OGsCOG1643@1|root,KOG0921@2759|Eukaryota
EC3.6.4.13
Descriptionpositive regulation of polysome binding
Cds size1842
COG categoryL
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig209.65.1prot_P-littoralis_Contig209.65.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig209 364502..371583 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790016.0092392-CDS-P-littoralis_Contig209:364501..3645761680790016.0092392-CDS-P-littoralis_Contig209:364501..364576Pylaiella littoralis U1_48CDSP-littoralis_Contig209 364502..364576 -
1680790016.0227156-CDS-P-littoralis_Contig209:364604..3646401680790016.0227156-CDS-P-littoralis_Contig209:364604..364640Pylaiella littoralis U1_48CDSP-littoralis_Contig209 364605..364640 -
1680790016.0330017-CDS-P-littoralis_Contig209:365133..3653701680790016.0330017-CDS-P-littoralis_Contig209:365133..365370Pylaiella littoralis U1_48CDSP-littoralis_Contig209 365134..365370 -
1680790016.0435467-CDS-P-littoralis_Contig209:365418..3657091680790016.0435467-CDS-P-littoralis_Contig209:365418..365709Pylaiella littoralis U1_48CDSP-littoralis_Contig209 365419..365709 -
1680790016.061743-CDS-P-littoralis_Contig209:366194..3664041680790016.061743-CDS-P-littoralis_Contig209:366194..366404Pylaiella littoralis U1_48CDSP-littoralis_Contig209 366195..366404 -
1680790016.0746515-CDS-P-littoralis_Contig209:367032..3671681680790016.0746515-CDS-P-littoralis_Contig209:367032..367168Pylaiella littoralis U1_48CDSP-littoralis_Contig209 367033..367168 -
1680790016.0840847-CDS-P-littoralis_Contig209:367539..3677871680790016.0840847-CDS-P-littoralis_Contig209:367539..367787Pylaiella littoralis U1_48CDSP-littoralis_Contig209 367540..367787 -
1680790016.0974686-CDS-P-littoralis_Contig209:368079..3682081680790016.0974686-CDS-P-littoralis_Contig209:368079..368208Pylaiella littoralis U1_48CDSP-littoralis_Contig209 368080..368208 -
1680790016.1090732-CDS-P-littoralis_Contig209:371103..3715831680790016.1090732-CDS-P-littoralis_Contig209:371103..371583Pylaiella littoralis U1_48CDSP-littoralis_Contig209 371104..371583 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790016.1209826-UTR-P-littoralis_Contig209:371583..3716301680790016.1209826-UTR-P-littoralis_Contig209:371583..371630Pylaiella littoralis U1_48UTRP-littoralis_Contig209 371584..371630 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig209.65.1

>prot_P-littoralis_Contig209.65.1 ID=prot_P-littoralis_Contig209.65.1|Name=mRNA_P-littoralis_Contig209.65.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=614bp
MLGGEMSMVWKGRLRLSVGLLYLLCWWRYTSATVAGGVVAAPGHQHLGRS
RSSAAAAAASAAAFAVNTGATAAVKLRLGGTCSSSSSCSSGIIGRIPYFG
ASLLQQQHRRQQQRRNQGVLGRGCEGGSRGRGQCLMGVAGLTGYVNNNLK
GAVAMEDLRKGDTLAIDGAGWMFRLLLGQRVDHGGDYDLFHKTIVREVTR
IREAGLNLLVFMDGPNRKMKAATKERRRDEEGEKFANLYGYTLDGGGAFV
GVGMPPDRSVGAFPLPMLAQRQFYASLRTAGVKIVECPGEADQELAKASA
EDETGRTFAVGSDSDFFVFERCRYIHFDDLKLPDNNVDGTVDAKERVAQA
RVWTRERLAELCGISEQQVVEWAILMGNDYTRELSLPAIGFGNHKHRRPG
KTLEYVRMIGPNVKIEQSETVFVRRRHSSSNRGHDNEEEEEYDEEEEEEY
DEEEENDESSEDGDDDADKEEEEGGEEKEDGSSHISSTVASSSVFDEMER
EEEEEEEEEREGEEDRTEAARGSVANSPPPAANTPTSGKSGKTKRSRRIS
EKSARAMEFSRALYALEPLDRFPDDVAVKEDDDEVLVAQEEEEEEEAKSP
SALLLTVPVATATS
back to top

mRNA from alignment at P-littoralis_Contig209:364502..371630-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig209.65.1 ID=mRNA_P-littoralis_Contig209.65.1|Name=mRNA_P-littoralis_Contig209.65.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=7129bp|location=Sequence derived from alignment at P-littoralis_Contig209:364502..371630- (Pylaiella littoralis U1_48)
AGCGTTGGAGCTGGCCAGAGCAGTGATTTGGATCCCCAGCGGCACCCATG
CTGGGGGGAGAGATGAGCATGGTGTGGAAGGGGAGACTCAGGTTAAGCGT
AGGATTGCTGTACCTCTTGTGCTGGTGGCGATATACATCGGCGACGGTCG
CAGGAGGTGTGGTTGCAGCGCCAGGACATCAACATCTTGGACGGTCAAGG
AGCTCTGCTGCTGCTGCTGCTGCTTCTGCTGCTGCGTTTGCTGTGAATAC
TGGTGCAACTGCTGCCGTCAAGTTAAGACTCGGCGGTACCTGCAGTAGCA
GTAGCAGCTGCAGCAGTGGTATCATTGGGAGGATACCATATTTTGGGGCC
TCGCTGCTACAGCAGCAGCATCGGCGTCAACAGCAGCGCCGGAATCAGGG
GGTGCTGGGACGAGGATGCGAAGGCGGTAGCAGAGGGAGAGGGCAGTGCC
TGATGGGCGTCGCTGGGCTGACCGGCTACGTCAACAATAACTTGAAAGGG
GCGGTGGCTATGGAAGACCTCCGCAAGGTGGGGACGGCGTGGGTGGTGAA
ACAGAGATAGTTACAGAGGAGCTCTACAGGACTGCGGTGTCGATTGTGGC
GAAGGAATCCGGCATGCATGCCTCTTCCGTCCCACGATGCAGCAGTACTT
TTGCACTCTTACATATATCTAAGGATAAAGTGTCACCTGCATGTTGTTGT
TGTTGATTCTCACATTTGCTTACTACCGCCGCAGTCTAGCCCGTGGTCAC
AAACCAGGCACATATCGTGCTAGGAAAAATAAATGAAAATAAAATATATG
GACTATGATCACCCACAGTCAAATCAGATATGGTACCGTTGGGGTACCAT
CTGTGGTGGCCAGAGTGTGTGTGTGTGTTGTCATCCCTTTCATTGGACGC
CACTCTACACCTTTCGGGTAGGTAGACGCTCCAACCGGGGTCACACAGGG
GGAAGTCAACACAGGAGTTTTTTTTTTTTTTTCTCCACGTCCGTCTGCGG
TGCTTGCCTTTTTGGTTGAGCTTTTATCGCGAGAAAGGGGCAGCAGTCCC
TTTCCCTCGTCGATGGTACGATCGAATTTTATGTACTCACGAAATGATCG
CTTTCCACTTTCACGTGCAACGTGAGAAAAAGCCCCTGATCGTGTTACTG
CACTGGGATTCGAACTCATGCGTGAATGTCAGAAAGTTGCGTAGATTACC
AACTGAACCACCGGGGCGACCGGCTAGAATACCAAACAAAATACAGAAAA
AAATAACAGGCTCGAAAGAAAAACAAAAACTGGAAACAGTCCGACAAACA
AAAAAATAACCACGACAAACCTCAACCATAACCATATACTCGGAGTACTT
CGAAGTACTTCGTACATCGAACCAGGGCCCAGGGCCATGACAGACCAAGG
CAAACGCAAACCAGGGCGATGGTCCAGTAACTATAAGATCAATAGACGAA
AGACAAAAAATAAAATAAAAAAGAAGAAGATACAGGGAGGGCACAAAGAC
TGAGGGAGGGCATTCGTAGACAAACACAACAAACAGGCCGCCAAACAAAG
AGGAAGCAGGGGAACGAAAAGGGAAAAGAAGACCGGAAGTACCGGAAGTC
GGAGGGGGGGGGGGGGGGGGGGTGATAAAAATAAATAAAAGGCATGCAAT
CAATCGCAAACATGTCTTGCCACGAGCTCTGCCTGTTCACGCTTGCTCTC
CTCAGTCGCACTCATGCCTCCTGCTACTAGCACCACCGTACCTAGTTGTT
TCTGCCCCACATCTTTGGCAGCAGCTACACCACCACTCCGCCCTTCCTAA
AGGTTTTCCACTCCGGCCACCCCGTAGCTTGGCTTTGGACTGCTTCTTCG
TGTGCTGTGCAACTCCAACCCCACTATCCCGCTGCCCTTGTGCCCCCCCG
TACTCCTCCTCTCGTTTACCCCCGCCATCCGTTCTCCCTCTTTTGGTCAA
GGCCTGCCCCTCAGCCGCGTCCCTCTCCCTTTTTAGTCGACGTGTTTCTG
ATAAATCTCCCTTTCTTGAGCCACTCGTCCGTGAACCGCCGCGCACCCTC
GTCGATCCTGTCGTACCACTCGTCAGCTCTCTTGGCACTTGCCTCCCACC
CCTCTTTTTTGTCGACCATGATGTCGAACGCTTCGAGGTCCTCCTGCATT
CGCCTCAGCCAGTCAAACTCTTGCCCCCCCAGATACCTCGCTCCCCCCTG
CAATTCTCCCAAAAGAGCAGTTTTCGGGAGTCTCTCCTCTCTCATGCGCG
CAACGAATCCTGCGAAGCACAGTCGCCGCTTGCGCACGGTGGCCTCAACG
CTCTCGTCGCAACCCGCGGTGATCAGGTGGTACACATATAGAGCGAGCGC
GCTTCGCAATCGTATGCGTGTAGCTGCCGTCAGGAAGTGAGTACTCTGCT
GTGCAGAGCGCGCGCGTGTGTGCGCCCTATCGTACCGCTGGGATGCACGT
CACGACACACAAACGAGACACCCCCACGCGAATTGCGCAGAGGATGATCT
TGAGCACAATGCGTGTTCTGTATTCGGTCTCTCCCGCAAATGCACGCCAA
CACGGCCAGGAGGGAAAGAGAGAGGGGACACTCCCCCCAAACTGAAAGAT
CCATCATACAGTAGGTATAATACGAAGTAATCCGTACTTCGTATCATACT
TCGACCCTTGTGAACAGCAGTAACGTCATGAAATGTGCACACACCTTGAT
TTTGATGAAAATAACTCCATTTCGCAAAGTCTTGTTGTAAAGTTATGACA
TCGTGTCATGAATAACCGGTGCCCCCTGCATGTAATTCGGAGTACGCTAC
GATAGAGCAGCACAACGGAGTTGATTCGCACGACAACGTGGTGCTCGCGC
AGCAAGCAGGGCCAACACAACAACGACAGCAGCGTTGAACTTTGCTCGAA
ACAATTGCTGTTGTTGTGTCGAGCACTTTTGTAACCAAACGAACAGGATT
TATTCATTTATTCGCCCGCCATTCGAGTCGCGCACCGCATGTGCAGTCAC
AGCAGTGACAGAAAGCGTGTTTCGTGTTTACCCCGAAAAACAACAGCTGT
TTTGCTATTTGTAATGGAGTCTCGGATGCATGCACTGACTGCTGTTTCAC
GTGCGAATTTGTACAGCAGTGGCGGCAGTGCTTCCCTTTTTGTTGTAATT
GGATATCGACACCTCCACCCGGCTTTGTCATATCCTGCAAAGGTTTGAAA
GCTACGATAATGCAACTACGAACCCGTGCAGCTGCTACTGTCTGTTGTAG
GAGATATCCAAGTCCGAACGAGCTGGAGCAGGCACCACAACCAGGCACAT
GACAAAAGCGTTGACGTTCTGTGACTCCCCCCCCCCCTCCCCCGCGCGTG
TTCTTGTTTTCATTTATTTTGGTTTGGTTTTGTGCGTTGTTGGACCTTTT
TTGCCTTTTCACATTTTTTTAGGGCGACACGCTAGCGATCGACGGAGCGG
GATGGATGTTCCGCCTCCTGCTAGGCCAGCGTGTTGACCACGGAGGAGAC
TATGACCTCTTCCACAAGACCATCGTGCGCGAAGTGACCCGAATCCGGGA
GGTACATGGGCAGTAAGACGCACCGGAGTTTGCACACACACGCACGCACG
CACGCACGCACGCATGCATGCACGCACATGCGCACCCTTTTGATGAAGGC
CTTAAAAACCTTGACAGGGCGCTACTGCCGTCATTTCCGGTTCCGATCCG
GTTGATTCCCATCCCGTCCGCTTTTCCAACCTCTGCCCTGCTTGTATGAT
AGCTCCAAATATGTAAATGTTCACAAGGCATGCAACAAATATAAACGCGC
CCCCTACCCCGCGCCCTCCTCCGCTCTCCCCGTCTCTCCCCAGGCGGGCC
TTAACCTGCTCGTGTTTATGGACGGGCCGAATCGAAAGATGAAGGCGGCC
ACAAAGGAACGCCGGCGTGATGAAGAAGGGGAGAAGTTTGCCAACCTGTA
CGGCTACACCCTGGACGGGGGGGGCGCGTTTGTCGGGGTGGGGATGCCTC
CGGACCGTAGCGTGGGGGCGTTTCCCCTTCCCATGCTGGCGCAGAGGCAG
TTCTATGCTTCTCTTCGCACCGCGGGCGTCAAGATTGTCGAGTGAGCGCC
TGCTGCTGCTGCTGTTACTGCCGCTTGTAGACTCCCCCACCCACCCCCCG
ACTAAACGTTAAGAGCACCCAAATATTGGTGTTTACTATTACGAGGAGTA
GGAACTGTGATCCGCCATGAAAAGGGTGCGTCGTTCGTTGATGGTGGTGA
GTCTAGCGCAATGAAGTACGCCCCCTCCCCCCCCCCACCGACATACATGC
CTACTTTGAAAGGCGTTGATATGTCCTATGTATTGCATCTTGAGCAACGG
TGATATCAACCGCCGTGTGATCAACCGTCTTGTCTCTCTGTCTATCTGTA
TGTATGTATGTATGTATGTATGTATGTATGTATGTATGTATGTGATGAAT
GTACGCATGTAGATGCCCCGGAGAGGCGGATCAAGAGCTGGCCAAAGCCA
GCGCCGAGGACGAAACGGGGAGGACGTTCGCCGTGGGGAGTGACAGCGAC
TTCTTCGTCTTCGAGCGCTGCCGCTACATTCACTTCGACGACCTCAAAGT
GCGTGCGTGTGAGCGAGAGAGAGGAGGGGTCGGGGCGGGGACGGGGAAGA
GTTGTACGCAATCGTTGGTTGCCTATATATGTAGATTTGATCAAACTAAT
CACACGCATCCCCGAAACGCCGAGACGGTACAGCATCGAGGTCCCACCGA
CCTGGCACCACGGATGCAGAGGGGGGGCGGGTTCTTGCTGCAGTTAGGAT
TAGGATTGGGATTCGGAGCGTAAAAAAGTTACAGTAGAAGGACGTCCTGT
TTGGACACTTTGTAAAATTATTTTATTTTTTTTCTTTAACTCGGTGTTTG
AGGGGCGATAAGTTTGCGCGTGGTGCAGGACTACCGCCTGTATACGCTTT
GAATATCCTCAAAAATGACTCGCTGGATTGTGAGGAAGAAGCAGCGTGGA
GCCGTTCCTCACCACATAGAGTATGGCGGTCCGGAAAGGGCAAAACATCT
GGCCTGTTTGGAGCAAGTTGTGGCTCTTTTGAGTCAGATATCGACCGCCG
TCTCGGCTAGCGCCCTACACATTTCTATCAAAAGGTCCTTGCAGCTGATC
TATCTCCTAACACGTTGTTTATACTTGACGCCTCATATCCCCACCATTTC
CCCAACAACCGACCCCCCATATCCAGCTGCCGGACAACAATGTGGACGGG
ACGGTGGACGCAAAAGAAAGGGTGGCGCAGGCACGGGTCTGGACCCGCGA
GCGCCTTGCTGAGCTGTGCGGCATCAGCGAGCAGCAGGTAGTGGAGTGGG
CGATTCTTATGGGAAACGACTACACACGAGAGCTCTCCTTGCCAGCCATT
GGATTCGGCAATCACAAGCATCGTAGGCCAGGGAAGGTTAGTCAATTTGG
TTCGGCTATTTGCTTCCGCAGCATCGAAGTGGAAACTAAATTTCGCGAAA
GAGAACTTGGGCGGGGGTGGGGGGGTTGTTTCGCTTTTGACCTTTTTGTT
CTTGTCGTTTGCCAAGTTTCGGGACAGCTTGCTCCCATGCTTTGTATAAT
ATGTACATAGCGTACATAACCCGAAAGTATTTCTCACGATTGAGGGCTGA
TTCGCTGCGACCGGATGATTCTTCTGATGTGCGCTCTTTTTTTTTGTACA
TGCCACCGCAGTACAATTGTTTTTCGTTTGTTCTCCCCTCCTTCCCTACT
TCTTACCCTTCCTCCGATCTCCTGGTGCACGCACGATTGATCATGTTCAC
CGTAAATGCTTTCATTTGCTGCTGCTGCTCCTCCTCGAACCACCGCCCCC
ACCCCCCCACTTTGAGCGCCGCCCCTTACCAACGCCGTGTCCGTTTCTAC
CGTCTGGCGTACTTCCGCCAGACTCTGGAATATGTGCGGATGATCGGACC
AAACGTCAAAATCGAACAAAGCGAAACGGTATTCGTGCGGCGTCGGCACT
CCTCCTCCAATCGGGGACACGATAACGAGGAGGAGGAAGAATATGACGAA
GAGGAGGAGGAAGAATATGACGAAGAGGAGGAAAACGACGAATCGTCGGA
GGACGGCGATGACGATGCGGACAAGGAGGAGGAGGAGGGGGGGGAGGAGA
AGGAGGACGGAAGTTCACATATTTCCTCGACAGTGGCTTCTTCCTCTGTC
TTCGACGAAATGGCGGCCAAGGACGGTGCGGGCGCGAGTGCCCTGGCAGG
GGAGAACGAGGAACGAGAGGAAGAGGAGGAGGAGGAGGAGGAGAGGGAGG
GGGAGGAGGACAGGACTGAGGCAGCTAGGGGTAGCGTTGCGAACTCGCCG
CCGCCGGCAGCGAACACGCCGACGTCCGGGAAGTCAGGAAAGACGAAGCG
TTCCCGACGCATTTCGGAGAAAAGCGCGAGGGCGATGGAGTTCTCGCGCG
CGCTGTACGCGCTGGAGCCGCTGGACCGGTTCCCGGACGATGTGGCGGTG
TGTAAACGCGACGGGTGTGCTGTGGGACGACAGCAATAACTCTGATATGA
CCGACAATGTTTGAAGCTACAATTCAAAAACACAAAAATACCAGTACTGC
TGTACAATCAAGTTACTTTTTACGGTGTGTATTTGCTTTTCCCTCCGAGA
CAGACGGCTTACGCTTGTTGATCTGTCTCCCAAAACGCAGCGCCCACGAT
AGCATGCTCCGTATCGTTTCAAACCTACGTTTGTTGGTCGTCAGCCGGTG
TAAAACCCGCTTGTGGAGAACGGTGAAGTTTGGCATCCCTTCGCGCGCAC
AAGGATGTGGAACAGGTTTTCGTCGACGCATCAAAGATGCGCTCGGACGC
AAAGTAATACTTCGAAGTATTCTATGGATTTTTTTCCCCAGCAGCGCGCG
TCATGCTTCTCCAAAGCTCTAAGCAATCTCATATCTCTCTTTTCCTCTCT
CTCTATTTGGCCAATTGCTCCGTCGTCATTCGGAAATAAGGTGAAAGAGG
ACGACGACGAAGTCCTGGTAGCTCAGGCCGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGCGAAGTCACCCTCGGCGCTGCTAC
TGACGGTGCCGGTGGCAACGGCGACGTCC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig209:364502..371630-

>mRNA_P-littoralis_Contig209.65.1 ID=mRNA_P-littoralis_Contig209.65.1|Name=mRNA_P-littoralis_Contig209.65.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1842bp|location=Sequence derived from alignment at P-littoralis_Contig209:364502..371630- (Pylaiella littoralis U1_48)
ATGCTGGGGGGAGAGATGAGCATGGTGTGGAAGGGGAGACTCAGGTTAAG
CGTAGGATTGCTGTACCTCTTGTGCTGGTGGCGATATACATCGGCGACGG
TCGCAGGAGGTGTGGTTGCAGCGCCAGGACATCAACATCTTGGACGGTCA
AGGAGCTCTGCTGCTGCTGCTGCTGCTTCTGCTGCTGCGTTTGCTGTGAA
TACTGGTGCAACTGCTGCCGTCAAGTTAAGACTCGGCGGTACCTGCAGTA
GCAGTAGCAGCTGCAGCAGTGGTATCATTGGGAGGATACCATATTTTGGG
GCCTCGCTGCTACAGCAGCAGCATCGGCGTCAACAGCAGCGCCGGAATCA
GGGGGTGCTGGGACGAGGATGCGAAGGCGGTAGCAGAGGGAGAGGGCAGT
GCCTGATGGGCGTCGCTGGGCTGACCGGCTACGTCAACAATAACTTGAAA
GGGGCGGTGGCTATGGAAGACCTCCGCAAGGGCGACACGCTAGCGATCGA
CGGAGCGGGATGGATGTTCCGCCTCCTGCTAGGCCAGCGTGTTGACCACG
GAGGAGACTATGACCTCTTCCACAAGACCATCGTGCGCGAAGTGACCCGA
ATCCGGGAGGCGGGCCTTAACCTGCTCGTGTTTATGGACGGGCCGAATCG
AAAGATGAAGGCGGCCACAAAGGAACGCCGGCGTGATGAAGAAGGGGAGA
AGTTTGCCAACCTGTACGGCTACACCCTGGACGGGGGGGGCGCGTTTGTC
GGGGTGGGGATGCCTCCGGACCGTAGCGTGGGGGCGTTTCCCCTTCCCAT
GCTGGCGCAGAGGCAGTTCTATGCTTCTCTTCGCACCGCGGGCGTCAAGA
TTGTCGAATGCCCCGGAGAGGCGGATCAAGAGCTGGCCAAAGCCAGCGCC
GAGGACGAAACGGGGAGGACGTTCGCCGTGGGGAGTGACAGCGACTTCTT
CGTCTTCGAGCGCTGCCGCTACATTCACTTCGACGACCTCAAACTGCCGG
ACAACAATGTGGACGGGACGGTGGACGCAAAAGAAAGGGTGGCGCAGGCA
CGGGTCTGGACCCGCGAGCGCCTTGCTGAGCTGTGCGGCATCAGCGAGCA
GCAGGTAGTGGAGTGGGCGATTCTTATGGGAAACGACTACACACGAGAGC
TCTCCTTGCCAGCCATTGGATTCGGCAATCACAAGCATCGTAGGCCAGGG
AAGACTCTGGAATATGTGCGGATGATCGGACCAAACGTCAAAATCGAACA
AAGCGAAACGGTATTCGTGCGGCGTCGGCACTCCTCCTCCAATCGGGGAC
ACGATAACGAGGAGGAGGAAGAATATGACGAAGAGGAGGAGGAAGAATAT
GACGAAGAGGAGGAAAACGACGAATCGTCGGAGGACGGCGATGACGATGC
GGACAAGGAGGAGGAGGAGGGGGGGGAGGAGAAGGAGGACGGAAGTTCAC
ATATTTCCTCGACAGTGGCTTCTTCCTCTGTCTTCGACGAAATGGAACGA
GAGGAAGAGGAGGAGGAGGAGGAGGAGAGGGAGGGGGAGGAGGACAGGAC
TGAGGCAGCTAGGGGTAGCGTTGCGAACTCGCCGCCGCCGGCAGCGAACA
CGCCGACGTCCGGGAAGTCAGGAAAGACGAAGCGTTCCCGACGCATTTCG
GAGAAAAGCGCGAGGGCGATGGAGTTCTCGCGCGCGCTGTACGCGCTGGA
GCCGCTGGACCGGTTCCCGGACGATGTGGCGGTGAAAGAGGACGACGACG
AAGTCCTGGTAGCTCAGGAGGAGGAGGAGGAGGAGGAGGCGAAGTCACCC
TCGGCGCTGCTACTGACGGTGCCGGTGGCAACGGCGACGTCC
back to top