mRNA_P-littoralis_Contig209.64.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig209.64.1
Unique NamemRNA_P-littoralis_Contig209.64.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig209.64.1 vs. uniprot
Match: D8LSM0_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM0_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 3.020e-36
Identity = 97/172 (56.40%), Postives = 114/172 (66.28%), Query Frame = 1 
Query:  139 TMLDVKEAQLQAELRKRPYGDAVFEALQRTVDEEEAVVVSTGGADGAAVAAAAVGKGEGGSSEKPGGLQGTGGSXXXXXGAAGFLSTGDKVWKRGAAGSGDGSSGSDEKENRRLEGERVEAAARRTALWAVARGHREKLPDSVRVKWPDVLLSLRYQKNLLEAYREREKRES 654
            T LDV EA+LQAEL KRPYGDAVFEAL+RT+++EEAVVV  G A+G+       G      S+  GG               G + TGDKVW R           SDE+E+ RLE ERVEAAARRTALWAVARGHR++L   VRVKWPDVLLS+RYQKNLL  YRERE +++
Sbjct:  570 TRLDVVEAELQAELLKRPYGDAVFEALRRTLEQEEAVVVRGGAAEGSGSLGTMTG------SDNSGG---------------GDVVTGDKVWNRAPG-------VSDEEEDLRLEFERVEAAARRTALWAVARGHRKELAADVRVKWPDVLLSMRYQKNLLRMYREREAQDN 713
[Close]
BLAST of mRNA_P-littoralis_Contig209.64.1 vs. uniprot
Match: A0A6H5KLV6_9PHAE (Helicase ATP-binding domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV6_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 1.250e-34
Identity = 137/296 (46.28%), Postives = 157/296 (53.04%), Query Frame = 1 
Query:  139 TMLDVKEAQ-----------LQAELRKRPYGDAVFEALQRTVDEEEAVVVSTGGADGAAVAAAAVGKGEGGSSEKPGGLQGTGGSXXXXXGAAGFLSTGDKVWKRGAAGSGDGSSGSDEKENRRLEGERVEAAARRTALWAVARGHREKLPDSVRVKWPDVLLSLRYQKNLLEAYREREKRESARASATGVAAAVGDMKSFTSFRKLKTDPVRNPKPAAGFSKPSKKRGDGTAAGGRKQGSHARGXXXXXXXXXXXXXXNKSRRSDAADYSAEFIMPRDHFHGPTFHALLHEYRAE 993
            T LDV EA+            +AEL KRPYGDAVFEAL+RT+++EEAVVV  G A+G+                   G  GT   XXXXX   G + TGD++W R           SDE+E+ RLE ERVEAAARRTALWAVARGHR++L D VRVKWPDVLLS+RYQKNLL  YRERE  ++  A                                                           XXXXXXXXXXXXXX        +  SAEFIMPRDHFHGPTFHALL+EYR E
Sbjct:  296 TRLDVVEAEHGEPRRRGSPVAKAELLKRPYGDAVFEALRRTLEQEEAVVVRGGAAEGS-------------------GSLGT--XXXXXXXXXGDVITGDRIWNRAPG-------VSDEEEDLRLEFERVEAAARRTALWAVARGHRKELADDVRVKWPDVLLSMRYQKNLLRMYREREAVDNHEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSCSAEFIMPRDHFHGPTFHALLNEYREE 554
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig209.64.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSM0_ECTSI3.020e-3656.40Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5KLV6_9PHAE1.250e-3446.28Helicase ATP-binding domain-containing protein n=1... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig209contigP-littoralis_Contig209:362194..364301 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LSM0
Preferred nameYTHDC2
PFAMsDEAD,HA2,Helicase_C,OB_NTP_bind,YTH
Model size1129
Max annot lvl2759|Eukaryota
KEGG koko:K14442,ko:K20099
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
Exons3
Evalue4.95e-37
EggNOG OGsCOG1643@1|root,KOG0921@2759|Eukaryota
EC3.6.4.13
Descriptionpositive regulation of polysome binding
Cds size1128
COG categoryL
BRITEko00000,ko00001,ko01000,ko03019,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790015.9591942-CDS-P-littoralis_Contig209:362193..3627511680790015.9591942-CDS-P-littoralis_Contig209:362193..362751Pylaiella littoralis U1_48CDSP-littoralis_Contig209 362194..362751 -
1680790015.9707074-CDS-P-littoralis_Contig209:363265..3636701680790015.9707074-CDS-P-littoralis_Contig209:363265..363670Pylaiella littoralis U1_48CDSP-littoralis_Contig209 363266..363670 -
1680790015.979945-CDS-P-littoralis_Contig209:364136..3643011680790015.979945-CDS-P-littoralis_Contig209:364136..364301Pylaiella littoralis U1_48CDSP-littoralis_Contig209 364137..364301 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig209.64.1prot_P-littoralis_Contig209.64.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig209 362194..364301 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig209.64.1

>prot_P-littoralis_Contig209.64.1 ID=prot_P-littoralis_Contig209.64.1|Name=mRNA_P-littoralis_Contig209.64.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=376bp
NRQSRRKKAKFGGQADFANLIREEVRKSGGRSEAKLHRLMDNETLRTMLD
VKEAQLQAELRKRPYGDAVFEALQRTVDEEEAVVVSTGGADGAAVAAAAV
GKGEGGSSEKPGGLQGTGGSGESGSGAAGFLSTGDKVWKRGAAGSGDGSS
GSDEKENRRLEGERVEAAARRTALWAVARGHREKLPDSVRVKWPDVLLSL
RYQKNLLEAYREREKRESARASATGVAAAVGDMKSFTSFRKLKTDPVRNP
KPAAGFSKPSKKRGDGTAAGGRKQGSHARGGGGGGGRGGARSGGNKSRRS
DAADYSAEFIMPRDHFHGPTFHALLHEYRAEHLAAAREAQEEAEAAEDRK
REDGKDEGTEKSRAATENIASGATGS
back to top

mRNA from alignment at P-littoralis_Contig209:362194..364301-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig209.64.1 ID=mRNA_P-littoralis_Contig209.64.1|Name=mRNA_P-littoralis_Contig209.64.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2108bp|location=Sequence derived from alignment at P-littoralis_Contig209:362194..364301- (Pylaiella littoralis U1_48)
AACAGGCAGTCAAGGCGGAAGAAGGCAAAGTTCGGCGGCCAAGCCGACTT
CGCGAACCTGATCAGGGAGGAGGTCAGGAAGAGCGGGGGCAGGAGTGAGG
CAAAGCTGCACCGGCTCATGGATAATGAGACACTTCGCACGATGTTGGAC
GTCAAGGAGGCCCAGGTATGGTCTGAATCACTTACCGCACCAGCACATGC
GACGGTGTGTATGTGTGTGCGTCTTGGCGTGTGTGTGCCACAATTCCGAC
TGCCGATTTTTTTAATTTCGATTGCTCCGCACCAAAAAGGGTCCCTTCGC
AAAAACTCAGTATTCGCTACGTTCGTTGATGCACTTTTTCATTCCTTACC
TCTTTAAAATCCGCAGCCCTTCGCTTAATTTTGGAAGCAGCCCCCCCCCC
AGAAATCATTATTGTCCGTGCCACCTCTGGCTGTATGCCGTGATGTGTTT
GCGCTGCGATGGTGTGATTTTGACGAAAAACCTTGCGCTTTTGTTCGCGT
GGACGCACACACACACACGCACACACACTTTGAACACACACCCACACATG
TGCAGCACACGCCCGCACTCACACTCAAACTTACACAAAGCACACATGCC
CACGCACACGCACGCGCACGCCTCCACGCAGCTTCAGGCAGAGCTGCGGA
AGAGGCCCTACGGCGACGCCGTCTTTGAAGCTCTGCAGCGGACGGTGGAC
GAGGAAGAAGCGGTCGTGGTATCAACAGGGGGGGCAGACGGGGCAGCAGT
AGCAGCAGCAGCAGTCGGTAAAGGAGAGGGTGGCAGTAGTGAAAAGCCAG
GAGGCCTACAGGGGACGGGGGGAAGTGGCGAGAGCGGTAGTGGGGCGGCG
GGTTTCTTGTCGACCGGGGACAAGGTTTGGAAGCGAGGGGCGGCGGGGAG
CGGGGACGGCAGCAGCGGCAGCGACGAGAAGGAGAACCGGCGGCTCGAGG
GCGAACGCGTCGAGGCCGCGGCTAGGAGGACCGCGCTTTGGGCGGTGGCG
CGCGGGCACAGGGAGAAGCTGCCGGACAGCGTTCGGGTGCGAGTTTGATG
ATTGGTGATGATGGGTGATAGTGATGGTGATGGTTGATGGTAGTGGTGGT
GGTGGTTGTGATGAAGGGGGTTGGTTGGGGTCGCGTTGTTGCTTTTTGTT
GGTGTTGGGCGGGGGCTGGGGGTGGTGGCACGTGCTGGGGGTTGGTGGCC
GTGTTCATGTGTTGGCGGTGTTCGCGGCGTGGTGAGTGTCGGTGTTGTTT
TTTGTTGTTGTCGTCGTCACCATCGTTGAGTATGTGAAACTGCCCGTGCT
GCATTGCGCGACCGTTGGGCATCACCATGCATGTTCGGGTTGCGTATTTT
TTGTCTCAACTTCGGGTCTGGCGTGTATGTACTGCTGTACTTCAGAGGTC
CCACATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCGCTCGCTCGCTCTCTCGCCCTCCTTGCTCTACCCTCGCACGTCGC
TCCATCCCCGCTTTCTCTCTGTCTCTCTCTGCCTCATTCTTGATTCTCAG
GTAAAGTGGCCGGACGTCCTCCTTTCTTTGCGCTACCAGAAAAACCTGCT
CGAGGCGTACCGGGAGAGGGAAAAACGCGAGTCCGCGAGAGCTTCCGCCA
CTGGCGTTGCGGCCGCCGTTGGTGACATGAAGAGTTTCACTTCCTTCAGG
AAGCTCAAGACCGACCCCGTCCGAAATCCGAAGCCAGCGGCAGGTTTCTC
CAAACCTTCGAAGAAGAGGGGGGATGGTACGGCAGCAGGGGGCCGAAAAC
AGGGCTCGCACGCGCGGGGAGGGGGAGGGGGCGGGGGACGAGGAGGAGCG
CGCAGTGGCGGTAACAAGAGCCGCCGTTCTGATGCTGCTGATTATTCGGC
GGAGTTCATCATGCCTCGAGATCACTTCCACGGACCCACTTTCCACGCCC
TGCTTCACGAGTACCGAGCGGAGCATCTGGCGGCGGCCAGGGAAGCGCAG
GAGGAAGCGGAGGCAGCGGAGGACAGAAAGAGGGAGGACGGCAAGGACGA
AGGGACCGAAAAGAGTCGCGCCGCCACGGAAAACATCGCGTCTGGCGCAA
CGGGGTCT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig209:362194..364301-

>mRNA_P-littoralis_Contig209.64.1 ID=mRNA_P-littoralis_Contig209.64.1|Name=mRNA_P-littoralis_Contig209.64.1|organism=Pylaiella littoralis U1_48|type=CDS|length=1128bp|location=Sequence derived from alignment at P-littoralis_Contig209:362194..364301- (Pylaiella littoralis U1_48)
AACAGGCAGTCAAGGCGGAAGAAGGCAAAGTTCGGCGGCCAAGCCGACTT
CGCGAACCTGATCAGGGAGGAGGTCAGGAAGAGCGGGGGCAGGAGTGAGG
CAAAGCTGCACCGGCTCATGGATAATGAGACACTTCGCACGATGTTGGAC
GTCAAGGAGGCCCAGCTTCAGGCAGAGCTGCGGAAGAGGCCCTACGGCGA
CGCCGTCTTTGAAGCTCTGCAGCGGACGGTGGACGAGGAAGAAGCGGTCG
TGGTATCAACAGGGGGGGCAGACGGGGCAGCAGTAGCAGCAGCAGCAGTC
GGTAAAGGAGAGGGTGGCAGTAGTGAAAAGCCAGGAGGCCTACAGGGGAC
GGGGGGAAGTGGCGAGAGCGGTAGTGGGGCGGCGGGTTTCTTGTCGACCG
GGGACAAGGTTTGGAAGCGAGGGGCGGCGGGGAGCGGGGACGGCAGCAGC
GGCAGCGACGAGAAGGAGAACCGGCGGCTCGAGGGCGAACGCGTCGAGGC
CGCGGCTAGGAGGACCGCGCTTTGGGCGGTGGCGCGCGGGCACAGGGAGA
AGCTGCCGGACAGCGTTCGGGTAAAGTGGCCGGACGTCCTCCTTTCTTTG
CGCTACCAGAAAAACCTGCTCGAGGCGTACCGGGAGAGGGAAAAACGCGA
GTCCGCGAGAGCTTCCGCCACTGGCGTTGCGGCCGCCGTTGGTGACATGA
AGAGTTTCACTTCCTTCAGGAAGCTCAAGACCGACCCCGTCCGAAATCCG
AAGCCAGCGGCAGGTTTCTCCAAACCTTCGAAGAAGAGGGGGGATGGTAC
GGCAGCAGGGGGCCGAAAACAGGGCTCGCACGCGCGGGGAGGGGGAGGGG
GCGGGGGACGAGGAGGAGCGCGCAGTGGCGGTAACAAGAGCCGCCGTTCT
GATGCTGCTGATTATTCGGCGGAGTTCATCATGCCTCGAGATCACTTCCA
CGGACCCACTTTCCACGCCCTGCTTCACGAGTACCGAGCGGAGCATCTGG
CGGCGGCCAGGGAAGCGCAGGAGGAAGCGGAGGCAGCGGAGGACAGAAAG
AGGGAGGACGGCAAGGACGAAGGGACCGAAAAGAGTCGCGCCGCCACGGA
AAACATCGCGTCTGGCGCAACGGGGTCT
back to top