mRNA_P-littoralis_Contig208.42.1 (mRNA) Pylaiella littoralis U1_48
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Overview
Homology
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: D7FP21_ECTSI (Calponin-homology (CH) domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP21_ECTSI) HSP 1 Score: 160 bits (405), Expect = 6.040e-44 Identity = 76/83 (91.57%), Postives = 79/83 (95.18%), Query Frame = 1
Query: 13 NPQGPSKPGVPATLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKK 261
NP GP++ GV TLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKD+RMHGFDNGTATRVKRDNWGQLTRFFKK
Sbjct: 17 NPAGPTRAGVTPTLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDVRMHGFDNGTATRVKRDNWGQLTRFFKK 99
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: A0A7S2CUN8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CUN8_9STRA) HSP 1 Score: 135 bits (339), Expect = 6.420e-39 Identity = 62/83 (74.70%), Postives = 73/83 (87.95%), Query Frame = 1
Query: 19 QGPS-KPGVPATLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKKA 264
+GP+ P VP +LSRE LRW+QSLDLAYSVKNVKRDFSNGFL+AEIFSRYYDKDI+MH FDNG A R+K+DNWGQL +F +K+
Sbjct: 4 EGPAASPAVPTSLSRELLRWIQSLDLAYSVKNVKRDFSNGFLIAEIFSRYYDKDIQMHSFDNGIALRIKKDNWGQLLKFMRKS 86
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: A0A7S1U5K8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U5K8_9STRA) HSP 1 Score: 131 bits (329), Expect = 5.200e-36 Identity = 59/70 (84.29%), Postives = 65/70 (92.86%), Query Frame = 1
Query: 52 LSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKK 261
+SRE LRW+QSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKD++MH FDNGTA RVKRDNW QL +FF+K
Sbjct: 3 ISREVLRWIQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDVQMHSFDNGTAVRVKRDNWAQLQKFFRK 72
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: A0A7S4DIP4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DIP4_HETAK) HSP 1 Score: 122 bits (305), Expect = 2.960e-33 Identity = 54/74 (72.97%), Postives = 66/74 (89.19%), Query Frame = 1
Query: 43 PATLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKKA 264
P LSRE LRW+QSLDLAYSVKN KRDF+NGFLVAEIFSRYY+K+++MH +DNGTA +V++DNW QL +FF+KA
Sbjct: 16 PRNLSREVLRWLQSLDLAYSVKNPKRDFANGFLVAEIFSRYYEKEVQMHSYDNGTALKVRKDNWMQLQKFFRKA 89
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: A0A8J2X0Z0_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X0Z0_9STRA) HSP 1 Score: 126 bits (316), Expect = 5.140e-33 Identity = 56/71 (78.87%), Postives = 64/71 (90.14%), Query Frame = 1
Query: 49 TLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKK 261
TL+RE LRW+QSLDLAYSVKNVKRDFSNGFLVAEI+SRYYDKD++MH FDNG A R+K+DNW QL +FF K
Sbjct: 6 TLTREVLRWIQSLDLAYSVKNVKRDFSNGFLVAEIYSRYYDKDVQMHSFDNGIALRIKKDNWSQLLKFFHK 76
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: A0A7R9YFZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YFZ2_9STRA) HSP 1 Score: 124 bits (311), Expect = 3.880e-31 Identity = 56/71 (78.87%), Postives = 62/71 (87.32%), Query Frame = 1
Query: 49 TLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKK 261
+LSRE LRW+QSLDLAYSVKNVKRDFSNGFL AEIFSRYYDKD++MH FDNG RVK+DNW QL + FKK
Sbjct: 2 SLSREVLRWIQSLDLAYSVKNVKRDFSNGFLAAEIFSRYYDKDVQMHSFDNGNGVRVKKDNWQQLEKLFKK 72
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: H3H391_PHYRM (Calponin-homology (CH) domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3H391_PHYRM) HSP 1 Score: 115 bits (288), Expect = 1.730e-30 Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query: 52 LSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKK 261
L+RE LRW+QSLDLAYS+KNVKRDF+NGFLVAEI SRYYDKDI MH +DNG +VK+DNW QL + F K
Sbjct: 11 LNRELLRWIQSLDLAYSIKNVKRDFANGFLVAEILSRYYDKDISMHSYDNGIGMKVKKDNWDQLAKLFSK 80
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: A0A7S1CA74_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CA74_9STRA) HSP 1 Score: 120 bits (302), Expect = 6.410e-30 Identity = 55/71 (77.46%), Postives = 61/71 (85.92%), Query Frame = 1
Query: 49 TLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKK 261
TLSRE L+WVQSLDLAYSVKN KRDFSNGFLVAEIFSRYYDKD++MH FDNG + K+DNW QL +FF K
Sbjct: 24 TLSREVLKWVQSLDLAYSVKNAKRDFSNGFLVAEIFSRYYDKDVQMHSFDNGHSVASKKDNWAQLLKFFAK 94
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: A0A485L8U2_9STRA (Aste57867_17173 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L8U2_9STRA) HSP 1 Score: 119 bits (299), Expect = 1.630e-29 Identity = 54/75 (72.00%), Postives = 62/75 (82.67%), Query Frame = 1
Query: 37 GVPATLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKK 261
G P L+RE LRW+QSLDLAYS+KN+KRDFSNGFLVAEI SRYYDKDI MH FDNG +VK+DNW QL +F +K
Sbjct: 25 GAPNKLNRELLRWLQSLDLAYSLKNIKRDFSNGFLVAEILSRYYDKDISMHSFDNGIGLKVKKDNWDQLVKFMQK 99
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Match: A0A6G0XV47_9STRA (Calponin-homology (CH) domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XV47_9STRA) HSP 1 Score: 116 bits (291), Expect = 1.960e-28 Identity = 54/81 (66.67%), Postives = 63/81 (77.78%), Query Frame = 1
Query: 19 QGPSKPGVPATLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEIFSRYYDKDIRMHGFDNGTATRVKRDNWGQLTRFFKK 261
Q PS L+RE LRW+QSLDLAYS+KN+KRDFSNGFL+AEI SRYYDKDI MH FDNG +VK+DNW QL +F +K
Sbjct: 11 QPPSAGSASNKLNRELLRWLQSLDLAYSLKNIKRDFSNGFLIAEILSRYYDKDISMHSFDNGIGLKVKKDNWDQLLKFMQK 91 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig208.42.1 >prot_P-littoralis_Contig208.42.1 ID=prot_P-littoralis_Contig208.42.1|Name=mRNA_P-littoralis_Contig208.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=89bp GGHGNPQGPSKPGVPATLSRETLRWVQSLDLAYSVKNVKRDFSNGFLVAEback to top mRNA from alignment at P-littoralis_Contig208:204477..205461+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig208.42.1 ID=mRNA_P-littoralis_Contig208.42.1|Name=mRNA_P-littoralis_Contig208.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=985bp|location=Sequence derived from alignment at P-littoralis_Contig208:204477..205461+ (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig208:204477..205461+ >mRNA_P-littoralis_Contig208.42.1 ID=mRNA_P-littoralis_Contig208.42.1|Name=mRNA_P-littoralis_Contig208.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=267bp|location=Sequence derived from alignment at P-littoralis_Contig208:204477..205461+ (Pylaiella littoralis U1_48)back to top |