mRNA_P-littoralis_Contig208.33.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig208.33.1
Unique NamemRNA_P-littoralis_Contig208.33.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig208.33.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig208contigP-littoralis_Contig208:159299..161309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size522
Hectar predicted targeting categoryother localisation
Exons2
Cds size522
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790011.6126041-CDS-P-littoralis_Contig208:159298..1595441680790011.6126041-CDS-P-littoralis_Contig208:159298..159544Pylaiella littoralis U1_48CDSP-littoralis_Contig208 159299..159544 +
1680790011.6259577-CDS-P-littoralis_Contig208:161033..1613091680790011.6259577-CDS-P-littoralis_Contig208:161033..161309Pylaiella littoralis U1_48CDSP-littoralis_Contig208 161034..161309 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig208.33.1prot_P-littoralis_Contig208.33.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig208 159299..161309 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig208.33.1

>prot_P-littoralis_Contig208.33.1 ID=prot_P-littoralis_Contig208.33.1|Name=mRNA_P-littoralis_Contig208.33.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=174bp
ASSQGSGPLDSATVSAMMMPREFGVGPGSSEGGDGGGGGGTDGAGVGSSP
LHQAKNTSFLPFGHGRGGSGSGSDSGVGGVDVMDLTRRSSRSVSSTPVGG
ERAVDGGGGGGSGSGTVGTIGSSRNNNSSSIHSSIHSSPALPGYDVASSS
AVGGADADAGFPVLDIGGAGRGF*
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mRNA from alignment at P-littoralis_Contig208:159299..161309+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig208.33.1 ID=mRNA_P-littoralis_Contig208.33.1|Name=mRNA_P-littoralis_Contig208.33.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2011bp|location=Sequence derived from alignment at P-littoralis_Contig208:159299..161309+ (Pylaiella littoralis U1_48)
GCGTCCTCACAAGGTTCCGGTCCGCTGGACTCGGCGACGGTTTCCGCGAT
GATGATGCCGCGCGAGTTCGGCGTCGGTCCGGGCTCTTCCGAAGGCGGCG
ATGGCGGCGGCGGCGGCGGCACTGACGGGGCCGGCGTTGGCTCTTCTCCT
CTTCATCAGGCGAAGAACACCTCGTTTTTGCCGTTCGGACACGGTCGTGG
TGGCAGCGGCAGCGGCAGCGACAGTGGTGTTGGCGGTGTGGATGTGGTGA
GCTATATACGGAATAACATGAAACCATATTCATCTGCCATCCCAAAAATA
CTGATAACTTCGTTTTTTTTTTTCGTGCAGACAAAAAGCCAGACTTTTTT
TTTTTATGCTGCCGCTGCTGCTGCTATTTTTTTTTTTTTTTTAGCTTGCA
CCAGTTGTCAATTGTTTGCTTAAGGCAGTAGTATACTCCGATTTGTTGTA
TATGATAGTGTTTTATTTTTTATTGCAGGATGAGATGCGCGGACAGGGAC
CACTTCGGTCGATTCTGAAACGAAGAGAGATTGGGGCCGGCCTTGAGGAG
ATGGAGATATCATATACACCGACGAGGAGACGACGATGAGAGATATTTTT
CGGTTTTTCCGAAGGCGGGAGGACAATCGTTTCGAGTCTTTCCGCTCTCT
TGTTTGTTGAGGAGTAACGGAGCTCTTGAGCGTCGACCGACCCCAAAGGC
CCAAGTTAGGAGAGTAGATAGATACCTCAAGTTAGCTGAGGTTTATCACG
CGCTTCGAAGTTTTATCCCATCTTACGGGAGAATCAAATACCCCCCGAGG
TAGGTGAGTTGTTTTGTGTGTATGTGTATTGTCATCCCTTTAATTGGACG
CCACGCTACTGTACTCCCTTTCGGGTAGGTAGACGCTCCAACCGGGGGTC
ACACAGCAGTAGGAAGTCAACACAGATTTTTTTTTTTCTTCTTCTCCGAA
TTTTATTTTATTTTATTGTCGCGAGAAAGGGTACAGCCATCCCTTGTTTT
ACAGAGGAAAAGTAACCCGAGGCGCTGAGCTTGTCTGGCCTCGAGAAGCA
GGTAAAATACCCCAGGGGCTCCATTATCTGATATCTCACATCTCATTTGA
TAAGCGAGGGAAAATAAACACTGCACCCAATGCGTGAAGGCTGTCTCAAA
AAATACCGAAAGAGACGGAGTCAGCTTTTTTCGCGAGGAGAACGAACACT
CGAGGGGCTGGCTTCTGCTATAACCTTAGGTTAGGGAGTGTAAATACTTG
AAGGGGCTTAGTTTTTATTTTGATCTTTCGATGTTGGACAGATGAATCAA
CCGAAGGCGCCGGGCTGTCATCAGGTGATGACAAATAAAAACGGTACCTG
ATGCTAGGTTTTATCCCATCTGCGGGGCCCCGATCCGATCCGTGCCCGCC
TGTTCGCGTGTCTGCTCTGATTTGGGGGTCCCCGCAGTCCTGCTTTGTGT
ACCCCTCTCGTCGCCTCACTTGTCATATCTCATCTTCCGCCGCGGACTAA
AATGAAATGCCAGCTTCGGCGGGCTGATACTGTACGTGCACGCTTGATTA
TCATCCTGATACATGCCATTCGTAGTTTGCCGTTTGCGGTTTGTTATGAT
GGCACGCGAAACCGCCACTGTGCTGTGTTGTGCTGTGCTTCTGCTGCATT
TATTGTTGACGTTTACGCGTATATCTTTCGGCGCCGTCTTGCGTGTGTGT
GCGTGGGCGTGGGCGTGTGTGTGTGCGTTCCACAGATGGATCTTACTCGC
CGATCGAGCCGCAGCGTTTCTTCTACCCCGGTTGGCGGAGAGCGCGCCGT
GGATGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCACAGTCGGCACCATAG
GAAGCAGCCGCAACAACAACAGCAGCAGCATCCACAGCAGCATCCACAGC
AGCCCCGCGCTCCCTGGGTACGATGTCGCCTCCTCCTCTGCGGTGGGCGG
TGCCGACGCCGACGCAGGGTTTCCAGTTCTTGATATTGGGGGTGCTGGTA
GGGGTTTTTGA
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Coding sequence (CDS) from alignment at P-littoralis_Contig208:159299..161309+

>mRNA_P-littoralis_Contig208.33.1 ID=mRNA_P-littoralis_Contig208.33.1|Name=mRNA_P-littoralis_Contig208.33.1|organism=Pylaiella littoralis U1_48|type=CDS|length=522bp|location=Sequence derived from alignment at P-littoralis_Contig208:159299..161309+ (Pylaiella littoralis U1_48)
GCGTCCTCACAAGGTTCCGGTCCGCTGGACTCGGCGACGGTTTCCGCGAT
GATGATGCCGCGCGAGTTCGGCGTCGGTCCGGGCTCTTCCGAAGGCGGCG
ATGGCGGCGGCGGCGGCGGCACTGACGGGGCCGGCGTTGGCTCTTCTCCT
CTTCATCAGGCGAAGAACACCTCGTTTTTGCCGTTCGGACACGGTCGTGG
TGGCAGCGGCAGCGGCAGCGACAGTGGTGTTGGCGGTGTGGATGTGATGG
ATCTTACTCGCCGATCGAGCCGCAGCGTTTCTTCTACCCCGGTTGGCGGA
GAGCGCGCCGTGGATGGCGGCGGCGGCGGCGGCAGCGGCAGCGGCACAGT
CGGCACCATAGGAAGCAGCCGCAACAACAACAGCAGCAGCATCCACAGCA
GCATCCACAGCAGCCCCGCGCTCCCTGGGTACGATGTCGCCTCCTCCTCT
GCGGTGGGCGGTGCCGACGCCGACGCAGGGTTTCCAGTTCTTGATATTGG
GGGTGCTGGTAGGGGTTTTTGA
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