mRNA_P-littoralis_Contig207.24.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig207.24.2
Unique NamemRNA_P-littoralis_Contig207.24.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig207.24.2 vs. uniprot
Match: A0A6H5JTZ0_9PHAE (PB1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ0_9PHAE)

HSP 1 Score: 378 bits (971), Expect = 1.080e-119
Identity = 236/377 (62.60%), Postives = 265/377 (70.29%), Query Frame = 1 
Query:  112 HLVKIKLNGDLRIIEIPTPPRFDALVSAVVAAYGVPAGSE--LTFTYMDTDGDEVRFDTNAELDLAFRTSSVPLRIMVQRSRSGSIASSTATGR-NPQASAAAPVAASSASIPSTPGYAVGSNVGSVLGDEDA-DMIVVDLPRETVTADPLGRIMDGGSIDGXXXXXXXXXXXXESEVDAQKVEDIDAPSAFEAEAAAARDPEGSVLYQKASMRLARRFKVHLTPTQLWRVMALFQIQGRQLVIFGLAPHKALDTTADPSSAVSGASSDEDGGATSTRG-GGLKRSKSCVARSMVGDPVQSLLALNGVELPEEEVQPLLEALRVRPRRLVRLKLLPPELLEGMPDGHH--DGKSSRGGPSGHPMHGPSGRGFGRFVG 1221
            HLVKIKL+GDLRI+EIP PPRFD LV  V+ AY +PAG E  LTFTY D DGDEVRFDTNAELDLA RTSSVPLRIMV            +    NP+A++AAP      SIPSTPGYAV SNVGS +G  D  DMI+VD+P E   A        GGS+DG             S+ D  + E I+  +AFEAEAAAARDPEGS+LYQKASMRLA+RFKVHLTPTQLWRVMALFQIQGRQLV+FGLAPH++LD  A  +S +   SSDE+GG        GLKRSKS VA ++V D VQ LL LNGVELPE+EVQPLL+ALRVR RRLVRL LL PE LE MPDGH+  D K  RGGP GHPMHG      GRF G
Sbjct:    3 HLVKIKLDGDLRIMEIPNPPRFDELVKTVMDAYSMPAGVEQQLTFTYKDNDGDEVRFDTNAELDLAIRTSSVPLRIMVANPPXXXXXXXXSRSTPNPEATSAAPP-----SIPSTPGYAVASNVGSAVGGGDEPDMIMVDMPGEAAAA---AAGPSGGSVDG-------------SQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKASMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDAAAAAASDLD--SSDEEGGENKPSAVRGLKRSKSQVAGTIVADHVQRLLGLNGVELPEDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDAKGPRGGPPGHPMHGHGHGPGGRFAG 356
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BLAST of mRNA_P-littoralis_Contig207.24.2 vs. uniprot
Match: D8LFK7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFK7_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 1.210e-106
Identity = 220/354 (62.15%), Postives = 248/354 (70.06%), Query Frame = 1 
Query:  205 AYGVPAGSE--LTFTYMDTDGDEVRFDTNAELDLAFRTSSVPLRIMVQRSRSGSIASSTATGR-----NPQASAAAPVAASSASIPSTPGYAVGSNVGSVLGD-EDADMIVVDLPRETVTADPLGRIMDGGSIDGXXXXXXXXXXXXESEVDAQKVEDIDAPSAFEAEAAAARDPEGSVLYQKASMRLARRFKVHLTPTQLWRVMALFQIQGRQLVIFGLAPHKALDTTADPSSAVSGA-SSDEDGGATSTRG-GGLKRSKSCVARSMVGDPVQSLLALNGVELPEEEVQPLLEALRVRPRRLVRLKLLPPELLEGMPDGHH--DGKSSRGGPSGHPMHGPSGRGFGRFVGGRG 1230
            AY +PAG E  LTFTY D +GDEVRFDTNAELDLA RTSSVPLRIMV                     NP+A++AAP      SIPSTPGYAV SNVGSV+G  +DADMI+VD+P E   A   G    GGS+DG             S+ D  + E I+  +AFEAEAAAARDPEGS+LYQK+SMRLA+RFKVHLTPTQLWRVMALFQIQGRQLV+FGLAPH++LD +A  S+A S   SSDE+GG        GLKRSKS VAR++V D VQ LL LNGVELP +EVQPLL+ALRVR RRLVRL LL PE LE MPDGH+  DGK  RGGP GHPMHG      GRF GGRG
Sbjct:    3 AYSLPAGVEKQLTFTYKDNEGDEVRFDTNAELDLALRTSSVPLRIMVANPXXXXXXXXXXXXXXRSTPNPEATSAAPP-----SIPSTPGYAVASNVGSVVGGGDDADMIMVDMPGEAAAAAAAGP--SGGSVDG-------------SQADGPEKEAINPQAAFEAEAAAARDPEGSLLYQKSSMRLAKRFKVHLTPTQLWRVMALFQIQGRQLVVFGLAPHRSLDASA--SAAASDVDSSDEEGGENKPSAVRGLKRSKSQVARTIVADHVQRLLILNGVELPGDEVQPLLQALRVRSRRLVRLGLLGPEFLEDMPDGHYHRDGKGPRGGPPGHPMHGHXXXPGGRF-GGRG 333
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig207.24.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JTZ0_9PHAE1.080e-11962.60PB1 domain-containing protein n=1 Tax=Ectocarpus s... [more]
D8LFK7_ECTSI1.210e-10662.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig207contigP-littoralis_Contig207:148497..152688 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size1736
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-04_001850.1
Cds size1632
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790007.0969179-CDS-P-littoralis_Contig207:148496..1499631680790007.0969179-CDS-P-littoralis_Contig207:148496..149963Pylaiella littoralis U1_48CDSP-littoralis_Contig207 148497..149963 -
1680790007.1149948-CDS-P-littoralis_Contig207:152421..1525861680790007.1149948-CDS-P-littoralis_Contig207:152421..152586Pylaiella littoralis U1_48CDSP-littoralis_Contig207 152422..152586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790007.125904-UTR-P-littoralis_Contig207:152586..1526881680790007.125904-UTR-P-littoralis_Contig207:152586..152688Pylaiella littoralis U1_48UTRP-littoralis_Contig207 152587..152688 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig207.24.2prot_P-littoralis_Contig207.24.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig207 148497..152586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig207.24.2

>prot_P-littoralis_Contig207.24.2 ID=prot_P-littoralis_Contig207.24.2|Name=mRNA_P-littoralis_Contig207.24.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=544bp
MATHLVKIKLNGDLRIIEIPTPPRFDALVSAVVAAYGVPAGSELTFTYMD
TDGDEVRFDTNAELDLAFRTSSVPLRIMVQRSRSGSIASSTATGRNPQAS
AAAPVAASSASIPSTPGYAVGSNVGSVLGDEDADMIVVDLPRETVTADPL
GRIMDGGSIDGGGSIGGVGNVLGESEVDAQKVEDIDAPSAFEAEAAAARD
PEGSVLYQKASMRLARRFKVHLTPTQLWRVMALFQIQGRQLVIFGLAPHK
ALDTTADPSSAVSGASSDEDGGATSTRGGGLKRSKSCVARSMVGDPVQSL
LALNGVELPEEEVQPLLEALRVRPRRLVRLKLLPPELLEGMPDGHHDGKS
SRGGPSGHPMHGPSGRGFGRFVGGRGRRGRGGPMHFHPPPPFQNHHHRGP
FSRSHGGPEGGHHPPRNGPPPHMMGMGGPHMEPPPGHNHRGHPHQPPAEH
THGESPREDGGGGADGRGPRGRHDPPPHHPHHPHHPHHPHHPHLHHQSMW
QHGGPGYFSSGGYGGPTGPPGGGYGYSYGGAGGGSGGWGGWAGP
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mRNA from alignment at P-littoralis_Contig207:148497..152688-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig207.24.2 ID=mRNA_P-littoralis_Contig207.24.2|Name=mRNA_P-littoralis_Contig207.24.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=4192bp|location=Sequence derived from alignment at P-littoralis_Contig207:148497..152688- (Pylaiella littoralis U1_48)
TCGGGAGTCTGCACGAGCAAACCGCCCGTCACGCCAGAGCAGTCGCGCAG
TCGCACCCGCCAGCAAGCCCAAACAAACCACAACAGTACTGAGTAGAGAA
ACATGGCAACGCATCTAGTGAAAATAAAGCTTAATGGAGACTTGCGGATC
ATAGAAATCCCCACCCCTCCGCGCTTTGACGCCCTCGTCAGTGCGGTCGT
GGCAGCTTACGGGGTTCCGGCAGGGAGCGAGCTGACTTTCACCTACATGG
ACACCGACGGAGACGAGGTAAGACCTGAACGTACCTACAGACAGAGTCGG
ACCAGGCAGGGTCGGCCGCCCATGAGGTGTCTCGTGGCCATATAAGATGT
TGATAGAGCTAGACGGGACGGGTGAGATCTTCTGCGTCCTCTGTTGGCTT
TGGATGTGAGCGAGCGAAACTCACCGAGTTTTTAGTTTTCCTTAGAATTC
CTTCGAAATCCAGACACTCCTTCCCTGAAACAGCTCCGAAGAACAACCCT
CTTCGTACTTGGGAAGCAACGAGGGTCTCAACCCAAGAGGCCCACTCTTA
CGGTAAATGGGCAATTCAAAATTAAAAGCGATGACCGGTTCAGGTAGGAT
GACCGTGAACAAGTTTTTTGTGACATTAAGCAGGGAACAGATCATAGGAT
TTATCGAGTTGTAAAAGCGTTTTCCAAGCCTAATTTCCCAAGTTGGAAAA
TCAGGCTGGGGTAAACTTATTATTGGAAATTCCGAAAATCTGGACAGCGA
TCGGACATCAGATGGGGTGCTCGGATGGACGGCAGGCGTTTGGCCTAATT
TTTAGAAACTGCTGCTGATGGCTCAGAGCGGCAAGCGTGAGTGTCAGCAC
AGCCAGCATCATACGTAGCTTGGGTACCTGCACCTGGCTCGTGTCTTTTG
TGTGTTCGTGTGTTCATTTGTGCTTGGTGTGGGCTCAAAACCACTGCTGC
GGCGTAACCTCGTGGCCGCGCACGCGACGGATTCCAACTTGGAATCTGAG
GGCAGATTCCAAGCGAATCGATTGGAATCCGGAGAAATGGAAGATATTTT
TCGATTTCGACCGAAAACAATCCTCAGTCTACTTAACATGTGTCAAAATT
GGATATCTTTATCTTCGGTTTTGATATTGGAACTAGATTGGGCGTCTTGT
GTGATCAGAAACGGGCCTTTTTCGATTAAAACGTTTTCAGTAATTGTTTT
TGATCCAGCACCAGCTCTGTGACGCTCATTCTATTTTGATCTGCTCCGCG
TATCAAAAATGATTTTGAAAACGTTTCAACTGCTTCGTACAATACAAGCA
CCTTACAGCAGCACGAAGCACAGGAGGACCATGCTGGTTTGGCTGCCACA
TCACTACTGCTGTGCTGCTGCTACTTATTATCGCGGGCGGTCAGCGCGTT
ACTTTCTCGTCGTCGTCCGCCAGCAGCGTGGCCCTTCATCCCATGGTGGC
AGCAGCATAAAGAGGGTGTGGTTGCGTTTCACCGCCAAGCACGCGTACGT
ACATCGTATGCATCAGCATGGTTTCTTGTTCTTCTTGCCATTACCTCCAA
AAACCAGTTTGACAGAGGTCTGGGTGTACTCCGACAAGTTCAGCGGGAGG
GGCAATACCTCGTTCTCTAGATTTATGGTTTGCGCGCGGTGCTGCTCTGT
TGTGACTTGTGACCCATCGCGTCGTAGGGTGCTGCGCTCGCTCCAAATAT
TATTTGAAATTCATACCCAAACGGCTTTTGGGATCCTCCACGAATAAAAC
AAAGTTTTTGATTTTGACACTTCATACGTATGATACATGAGATCCGATCG
AGATCCGATCTTGATATCACCAGGTTGGGATTGACAATATCAAAAACGAA
TCAGTTTTGATATTTTCATTTTTGACACATAATAAGTAGCCTCAGATAGG
ATTATTTTCCAATCCTGGAAGTTGGATTCCAATTCCTCCTTTGAAACCCT
TGGATCCCAATTATTGGCTCTACAATAAGAGTGGGCCTTGGAGGTTATGG
GCAGCTACCATAAATAGCTGCTTGATGGTGGATGACGATGACCTTATTAT
ATGACCTAAACAGGCTCGGTGGCTTTGTGAAGTGCTGGTCACCTGTGGGC
TGCTGTTGGCATTGTCTCTCCTCTCCTCTCCTCTCCTCTTCCTATTTTTT
TATTTTTTTGCTCTCTCTTGTAACATACTTCGAAGTACGAAGTACTCCGT
AATTTAATTTGATTTGATACTTCTTTCTCGTTCAGGTAATTATTTTTTCA
ATACATTCTATCTTTCTTGCTGCTTGGCTTTCAGCATTATTCGGCCTATT
TTCACAAGTCTGGGGTTTTGCTTTTTGTTCGTCGTGTCGAATCATATACT
TCGAAGTATGACTTTGAATTCCTCGCACGTACTCTCGTCACGCCACGAAA
CGAGAAATCCTGAGGCTGAAACATGATCACTGTTGTGGATTCGCGGCATC
ACCGCTAAATTATCCCAATCTATGATATCCGAATACGCTGCTACCGCTGC
GTTCCACAGACACAGACACACGATGTTGCCTGTCTGCTTCGGGTTCGTCG
ATGTGCCTACAGCAGTCCTGTCCAGACAAGCCACTGCAGCGTCAAACCCG
GGACTCATTTCACCCAAGTTCGGTCATGCTGGTGTTTATTTTCTTCATTG
CAAGCCTTGAACCAATTCCTTCACCTCACGATATTCATCACACTTGTCTT
TACCTCGCTGTCCGTACATCCACAGGTGCGCTTCGACACCAACGCCGAGC
TAGACCTCGCCTTCCGCACGTCTTCAGTACCTCTTCGCATCATGGTTCAG
AGATCGCGTTCCGGCAGCATTGCGTCGTCCACTGCTACGGGACGCAACCC
ACAGGCCTCTGCCGCTGCCCCTGTCGCTGCCTCTTCCGCATCCATTCCTT
CGACTCCCGGCTATGCCGTGGGCTCTAACGTGGGCTCCGTGCTGGGTGAC
GAAGACGCAGATATGATTGTGGTGGATCTGCCGAGAGAGACCGTCACTGC
CGACCCGCTCGGAAGAATCATGGATGGTGGCAGCATTGACGGAGGCGGTA
GCATCGGTGGCGTCGGGAATGTCCTGGGCGAGAGCGAGGTCGACGCGCAG
AAAGTGGAAGATATCGACGCGCCCTCCGCTTTTGAGGCCGAAGCCGCCGC
TGCGCGCGACCCGGAGGGAAGCGTGCTCTATCAGAAGGCATCCATGCGCC
TCGCTAGGCGATTCAAGGTTCACCTCACGCCAACCCAGCTGTGGAGGGTC
ATGGCGCTCTTCCAAATCCAGGGGAGGCAGCTGGTCATCTTCGGCTTGGC
GCCGCACAAGGCGCTGGACACCACCGCCGACCCCTCTTCTGCCGTGAGCG
GAGCTTCCTCCGACGAGGATGGTGGTGCCACTTCTACCCGCGGCGGCGGC
CTGAAACGAAGCAAGAGCTGCGTAGCGCGCAGCATGGTGGGCGACCCCGT
GCAGAGCCTGCTGGCTCTCAACGGCGTGGAACTACCTGAAGAGGAAGTGC
AGCCCTTGCTCGAAGCCCTGCGCGTGCGCCCCAGGCGTCTGGTCAGGCTC
AAGCTACTGCCCCCTGAACTCCTCGAGGGTATGCCGGACGGCCACCATGA
TGGAAAGAGCTCGCGGGGCGGGCCATCCGGTCACCCGATGCACGGGCCTA
GCGGCCGCGGGTTCGGGCGATTTGTCGGGGGCCGGGGCCGCAGGGGGAGA
GGAGGGCCGATGCATTTCCACCCGCCTCCGCCGTTTCAAAACCACCACCA
TCGAGGACCCTTTTCGAGATCCCATGGCGGTCCGGAGGGCGGCCACCACC
CGCCTCGAAATGGGCCCCCGCCCCACATGATGGGAATGGGAGGACCGCAC
ATGGAGCCGCCTCCCGGCCACAACCACCGGGGACACCCGCACCAACCTCC
CGCGGAGCACACGCACGGTGAGAGTCCCCGCGAAGATGGTGGCGGCGGTG
CGGACGGGCGCGGCCCCCGTGGCAGGCACGACCCTCCCCCCCACCACCCC
CACCACCCCCATCACCCCCATCACCCCCATCACCCTCACCTCCACCATCA
GTCTATGTGGCAGCATGGGGGACCCGGCTACTTCTCTTCGGGTGGTTACG
GTGGTCCTACCGGTCCTCCGGGAGGCGGCTACGGCTACAGCTACGGCGGT
GCTGGAGGCGGTAGTGGCGGATGGGGAGGATGGGCCGGTCCT
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Coding sequence (CDS) from alignment at P-littoralis_Contig207:148497..152688-

>mRNA_P-littoralis_Contig207.24.2 ID=mRNA_P-littoralis_Contig207.24.2|Name=mRNA_P-littoralis_Contig207.24.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1632bp|location=Sequence derived from alignment at P-littoralis_Contig207:148497..152688- (Pylaiella littoralis U1_48)
ATGGCAACGCATCTAGTGAAAATAAAGCTTAATGGAGACTTGCGGATCAT
AGAAATCCCCACCCCTCCGCGCTTTGACGCCCTCGTCAGTGCGGTCGTGG
CAGCTTACGGGGTTCCGGCAGGGAGCGAGCTGACTTTCACCTACATGGAC
ACCGACGGAGACGAGGTGCGCTTCGACACCAACGCCGAGCTAGACCTCGC
CTTCCGCACGTCTTCAGTACCTCTTCGCATCATGGTTCAGAGATCGCGTT
CCGGCAGCATTGCGTCGTCCACTGCTACGGGACGCAACCCACAGGCCTCT
GCCGCTGCCCCTGTCGCTGCCTCTTCCGCATCCATTCCTTCGACTCCCGG
CTATGCCGTGGGCTCTAACGTGGGCTCCGTGCTGGGTGACGAAGACGCAG
ATATGATTGTGGTGGATCTGCCGAGAGAGACCGTCACTGCCGACCCGCTC
GGAAGAATCATGGATGGTGGCAGCATTGACGGAGGCGGTAGCATCGGTGG
CGTCGGGAATGTCCTGGGCGAGAGCGAGGTCGACGCGCAGAAAGTGGAAG
ATATCGACGCGCCCTCCGCTTTTGAGGCCGAAGCCGCCGCTGCGCGCGAC
CCGGAGGGAAGCGTGCTCTATCAGAAGGCATCCATGCGCCTCGCTAGGCG
ATTCAAGGTTCACCTCACGCCAACCCAGCTGTGGAGGGTCATGGCGCTCT
TCCAAATCCAGGGGAGGCAGCTGGTCATCTTCGGCTTGGCGCCGCACAAG
GCGCTGGACACCACCGCCGACCCCTCTTCTGCCGTGAGCGGAGCTTCCTC
CGACGAGGATGGTGGTGCCACTTCTACCCGCGGCGGCGGCCTGAAACGAA
GCAAGAGCTGCGTAGCGCGCAGCATGGTGGGCGACCCCGTGCAGAGCCTG
CTGGCTCTCAACGGCGTGGAACTACCTGAAGAGGAAGTGCAGCCCTTGCT
CGAAGCCCTGCGCGTGCGCCCCAGGCGTCTGGTCAGGCTCAAGCTACTGC
CCCCTGAACTCCTCGAGGGTATGCCGGACGGCCACCATGATGGAAAGAGC
TCGCGGGGCGGGCCATCCGGTCACCCGATGCACGGGCCTAGCGGCCGCGG
GTTCGGGCGATTTGTCGGGGGCCGGGGCCGCAGGGGGAGAGGAGGGCCGA
TGCATTTCCACCCGCCTCCGCCGTTTCAAAACCACCACCATCGAGGACCC
TTTTCGAGATCCCATGGCGGTCCGGAGGGCGGCCACCACCCGCCTCGAAA
TGGGCCCCCGCCCCACATGATGGGAATGGGAGGACCGCACATGGAGCCGC
CTCCCGGCCACAACCACCGGGGACACCCGCACCAACCTCCCGCGGAGCAC
ACGCACGGTGAGAGTCCCCGCGAAGATGGTGGCGGCGGTGCGGACGGGCG
CGGCCCCCGTGGCAGGCACGACCCTCCCCCCCACCACCCCCACCACCCCC
ATCACCCCCATCACCCCCATCACCCTCACCTCCACCATCAGTCTATGTGG
CAGCATGGGGGACCCGGCTACTTCTCTTCGGGTGGTTACGGTGGTCCTAC
CGGTCCTCCGGGAGGCGGCTACGGCTACAGCTACGGCGGTGCTGGAGGCG
GTAGTGGCGGATGGGGAGGATGGGCCGGTCCT
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