mRNA_P-littoralis_Contig207.14.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig207.14.1
Unique NamemRNA_P-littoralis_Contig207.14.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig207.14.1 vs. uniprot
Match: A0A6H5JTC2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JTC2_9PHAE)

HSP 1 Score: 337 bits (863), Expect = 1.600e-109
Identity = 187/247 (75.71%), Postives = 205/247 (83.00%), Query Frame = 1 
Query:  121 AKSGATRQLLCSRCYTRDSCIQCCGRRFCLRHFHTSNHSSDHPRKAFVMNQRALDDQLPAFQEMWREAFQSVADDVDRLSRDVGKKVADDPLASIGMVVNPAPKGK--------GAEKSLGASSSAAKGXXXXXXXXXXXXXXXAQDPFARRRTRPKSYWAVGNDLDSASEVCSRTTDERAAAIAAAAPRVGEYQCESCESENTSFDIIGGAAVGSRKAETFGSKDAPELILRVLCHACGNNWLEER 837
            + SG  R+LLCSRCY R+SC+QCCG R+CLRHFHTSNHSSDHP+KA VMN+RALDDQLPAF+EMWREAFQSVADDV RLSRDV K+V DDPLASIGM + P   GK           +S G++SS    XXXXXXXXXXXXXXX  DPFARRRTRPKSYWAVG++LD+  E      DERAAAIAAAAPR GEYQCESCES+NTSFDIIGGAAVG+RKAETFG KDAPELILRVLCHACGNNWLEER
Sbjct:    7 SSSGTARELLCSRCYKRESCVQCCGTRYCLRHFHTSNHSSDHPQKAIVMNRRALDDQLPAFREMWREAFQSVADDVGRLSRDVSKRVEDDPLASIGMALKPVRNGKHPXXXXXXXXHQSSGSASSXXXXXXXXXXXXXXXXXXXV-DPFARRRTRPKSYWAVGHELDAPEEAEGSAADERAAAIAAAAPRAGEYQCESCESDNTSFDIIGGAAVGTRKAETFGKKDAPELILRVLCHACGNNWLEER 252
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig207.14.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTC2_9PHAE1.600e-10975.71Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig207contigP-littoralis_Contig207:110064..114318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1710
Hectar predicted targeting categoryother localisation
Exons5
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-04_001820.1
Cds size747
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig207.14.1prot_P-littoralis_Contig207.14.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig207 110934..114225 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.9014685-UTR-P-littoralis_Contig207:110063..1109331680790006.9014685-UTR-P-littoralis_Contig207:110063..110933Pylaiella littoralis U1_48UTRP-littoralis_Contig207 110064..110933 -
1680790006.9789302-UTR-P-littoralis_Contig207:114225..1143181680790006.9789302-UTR-P-littoralis_Contig207:114225..114318Pylaiella littoralis U1_48UTRP-littoralis_Contig207 114226..114318 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.9154081-CDS-P-littoralis_Contig207:110933..1110491680790006.9154081-CDS-P-littoralis_Contig207:110933..111049Pylaiella littoralis U1_48CDSP-littoralis_Contig207 110934..111049 -
1680790006.9273663-CDS-P-littoralis_Contig207:111221..1113271680790006.9273663-CDS-P-littoralis_Contig207:111221..111327Pylaiella littoralis U1_48CDSP-littoralis_Contig207 111222..111327 -
1680790006.9381132-CDS-P-littoralis_Contig207:112454..1127631680790006.9381132-CDS-P-littoralis_Contig207:112454..112763Pylaiella littoralis U1_48CDSP-littoralis_Contig207 112455..112763 -
1680790006.9554417-CDS-P-littoralis_Contig207:113377..1134731680790006.9554417-CDS-P-littoralis_Contig207:113377..113473Pylaiella littoralis U1_48CDSP-littoralis_Contig207 113378..113473 -
1680790006.9697025-CDS-P-littoralis_Contig207:114105..1142251680790006.9697025-CDS-P-littoralis_Contig207:114105..114225Pylaiella littoralis U1_48CDSP-littoralis_Contig207 114106..114225 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig207.14.1

>prot_P-littoralis_Contig207.14.1 ID=prot_P-littoralis_Contig207.14.1|Name=mRNA_P-littoralis_Contig207.14.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=249bp
MASRSSAESAKSGATRQLLCSRCYTRDSCIQCCGRRFCLRHFHTSNHSSD
HPRKAFVMNQRALDDQLPAFQEMWREAFQSVADDVDRLSRDVGKKVADDP
LASIGMVVNPAPKGKGAEKSLGASSSAAKGRRKDEHRKEAVAAAAAQDPF
ARRRTRPKSYWAVGNDLDSASEVCSRTTDERAAAIAAAAPRVGEYQCESC
ESENTSFDIIGGAAVGSRKAETFGSKDAPELILRVLCHACGNNWLEER*
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mRNA from alignment at P-littoralis_Contig207:110064..114318-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig207.14.1 ID=mRNA_P-littoralis_Contig207.14.1|Name=mRNA_P-littoralis_Contig207.14.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4255bp|location=Sequence derived from alignment at P-littoralis_Contig207:110064..114318- (Pylaiella littoralis U1_48)
AGGAGATGACAACAATAAATAACCAATGGTTATTTGTTGTTGTCATCTAC
CATTGTTTTTTTTTGCACCACTAGAAAGCCACACACCGAACACATGGCTA
GCCGCTCGAGCGCTGAGTCAGCTAAATCAGGGGCGACCCGCCAGCTTCTC
TGCAGCCGCTGCTACACGCGAGACTCGTGTATACAGTGTTGTGGAAGACG
TTTTTGTCTTCGGGTAAGAAACTGAAAATGATTTGTTCTCGTAAACGTAC
GTACAGCAGTCGCATGATGCGTATCATATCATATACCATATGATTCGAAC
TCGAGAAGTGCATGATCACACCGATTCTGTCGTGCAGCACATTGACACCG
CCTTTGATTGCTTATTGAAATATTAGTTCTACGTTGGTTCATTCCAGAAC
TGTCCTTGCGCATCTTGGTGGAGTATTCAGCAGCGTCCTCGTTTTCGCCA
CGTACCTAAAAATCTCGCAGTTCGCTAGAAGAGGCATGTACTCCGGAGTA
TTTTTTTTTTTCGAAAATTGCGCGAAATAGAAAATTACTTCGTACCTGGT
ACATCATTGCTGCTGTATATGCCATGGTCCACGAAGTGCTTCGAGATACG
AAAGATGGTAAGGCACACGCAGCGTGCCATTCGTGCGATGGGGTGAGAGT
ATCGGAGATTTTGCGCGTTCATCATTATCGTTGCTCGGTTCAAATCTGAT
CCTCGTCTCCTGCGGTCCGTTTTGCGATGTACGGAACCCCGCGGTCACGA
CTATGGGCAAAAGTAGCCAGACAAGATATGCCTCAAAGGAACGTTGCGGT
GCTTAATCGCTGCATCTGTATCGTCGCATGTTTCCCTGTTCGCAGCACTT
CCACACCAGTAACCACTCCAGCGATCATCCGCGGAAAGCGTTCGTCATGA
ACCAAAGAGCGCTTGATGACCAGCTGCCTGCATTTCAAGAGGTGGGTACT
GCTGTTGAGAAGCACAATGCCACTGGACTACGTAATCAGTCAGCGCTGTA
GACGACGGTCTTCGACGCTGCTGGTCTGTTGTGCCTCCTCGCCAAAGGGA
GGGAGGTACAGTGACAGCACTACGGCCGGGAGGTCATACTCGTACTAAGG
CTGAGAATTCCGAGTATTTTAGGCAATGATAAACCTATATATCTACGTGA
TAACGCGCTTCGTGCCTGGCTCAAAGAATCGCTACAGCGGTACGTAGTGA
TTGATAGTAAACATCGAATGAGACCACGTCATTTTTAGTTTATTTCAACG
TTGACATCTTGGAGTATTGAGTACGCAGACTTATTTTTCTTTTTCCGGCT
GGAAGTGCCTGCCTAACAGCAGTGCGTCAAAGATTCTTGCCATCGATTGA
CTTCATAACGACAGCCTCACCCGGAATAGGTGAAGCTCTCTGAGCTCCTC
CAAAATATGTTTCCTGTCTGAGTTCACAACCCTGATGCGATGAATAAGGA
CGCACGGATATTGACCATGCTAGCATCCACTCGCAGATGCTACTCGGTTT
ATTCTCAATGGTCATTGACGAAAATACGCCGATGAACGCGTTGTTCGAAT
CGTAGATGTGGAGAGAGGCGTTTCAGTCAGTCGCGGACGACGTCGACAGA
TTATCGCGAGACGTCGGGAAGAAGGTCGCAGATGACCCCCTTGCGTCGAT
CGGCATGGTCGTCAACCCAGCACCAAAAGGAAAGGGCGCGGAAAAATCTC
TAGGCGCTAGTTCGTCGGCGGCGAAGGGACGGAGGAAGGACGAGCACCGG
AAAGAGGCAGTCGCGGCTGCGGCGGCGCAAGATCCGTTCGCGCGGCGAAG
AACTCGACCAAAGAGTTACTGGGCCGTGGGGAACGACTTAGACTCAGCTT
CAGAGGTGTGTAGTGTGGGACTAAGTGCTTCTTTGTTTGCTTCGTCTTCG
GCCCTACTTTTTCCGGCAAAGCACCGAGGTATGGTCGAACTGGCCCCTTA
CGCTTCGATCAAACTGCTGTGTCACTCACCACAAATTGCGTACCATGGTA
GGATTTCAAATTTCAAATCAATGATCAGCGCGGTCCTCAGAACAAAAAAT
GAGCTGTGGAACGTGGAAGTTGGAACCTAGAGTCAATTTCTGATTGGCCA
ACCTCAGCGAAAAACATTCCTGGGAAGAATTTCGGCCACCGGGGTTCCTC
ATTTCTCGTTCCCTCCTCCAAAATAATTTGGAAGGCCCTCGTTCCTTGAA
ATTGTCCGAAAGTCCATGTGGAACAGGCTGCTGGGGGGCAAGAAATTTCC
GGTAGCTTTTCCCCTCTATCTGACCACAAAACCCATACCACACAAAATGA
CGAATACACAGCTCCCCCCACAACCATACCACCCCGCCTAGCGCCACGCG
CCGAATGACCCCTCCCTCAGATGAACAAAGACACCGCGCTGCAGCAGCAA
GAAGAGCAGCAGAGAAAAAATGGTATGTTTGTTCATCCGCTTTTTTGCCA
AACGCACCCGGACGACTGCGGCCGGTCAACATATAACCATTTTTCACACT
ATGATGTGCTGTGCTGTGTGTGGGACGTGTGTATGTGTGTCTTTGTCTGC
TGTGTGGGCGAGAGATGGGAGATGGACGGATTTGTGCGTGCGTGCGTGTG
TGGTGTTGAATAAGTCTCAACGGTCGATACTGCTGCTGTGCTGCTTTACT
TCTGTACTTGCACCACAGCAGCAACCTTCAGGCTTTCCGCTTGCAACCGG
CTCCACGTTCTTCATTTCGAAATCGTCTTTCTTTGTTTCAAGACACCACG
CGTGGAACAGGGAACGTGGAATCTTTCCACGCTCCTCATTTCACTTTTTG
TTCTAAGAACCGCCCTCGAGTCACCTATCCATCGGCGATGCTCAGCCACC
TCACATCTATCGTTGATGGCCAACTCCCTTACATCTGCGTTAATTTCATA
CTTTTGATGCCCACTAATCTCGCATATATCTCCTCCCCGCACTGTCGGCG
TCAAACCTCAACTTGTGTGACGTCCTGCTTATGATTCAAAGCGTACCACG
GATGAGAGAGCCGCCGCGATCGCGGCGGCCGCCCCTCGCGTGGGCGAGTA
CCAGTGCGAGTCATGCGAGTCCGAGAACACGAGCTTTGACATCATAGGTA
AGGTGTACGGTTTACTTGAACCGGTGTGCATGATAGGCTTGTGTTAGGGT
CTCGCCCATATAATTATTGCTTACAGCATGGACATAAACGCAGAGCCACA
TATTGATCGATTGGTCGAACACGATTTCAACCTATCCCCTCTCGCCTTGA
AATACGTGTCGGTGCTCAGGGGGCGCGGCTGTGGGCTCCCGCAAGGCGGA
AACCTTCGGCAGCAAGGATGCTCCAGAACTGATCCTCCGGGTGTTGTGTC
ACGCGTGCGGCAACAACTGGCTCGAGGAGCGGTAGCGGAGGGCCAGTAGC
AGGAACAAAAGTTCCGGTGGTTGTGTGCTGCGTACTACGTTCAGCTTTCT
TGAACGTGGTATACGTCCTTACTGAGTTTGTGTAATATAGGTGTTGTCGT
CCGTGTGATGGTGATGGCGGTTTTTATCCCTGGTTGTTTCGGATGTATGT
GTTGCATGCTTCGTTAATGGCACGATGGTCATTGCGTTGATGCAGGTTTT
CTTGCTGTGAACCTCGGAAGGAAGACATTGTGCGGGTACTTGGCAACATC
GATCACTTGTTGCTCGAGTTATGGAGGGTGCTCTTGCCCAGCACTTTTTT
TTTTTCTTAGGCTGTCTTTGTACACATAATATGCTGTTTAAATGCCAATC
GTGCTATCCCGTGAACGGCATGAACACGAACAGCAGCCCGTTCATGGAAT
ACAAACGTGCGGCTAGCTCCACGAAGTGGCGATGTGTACGTGTGTATAGC
TTCCTGAACTACTAAAAAGACAGTTCTTGTATTTTATGAATCGCCTGTAG
ACCTGGCCACTCACGATTTTTGTCCCTTGTGGACGAAGAACGGTCTGAGG
CCAATCTGCTTCAGCATTTATTTACCTTGTACACATTTGTGGGTGTTGAT
ATGTTTGCCGGTCTTCGTTTTCCTCTCGGCTTTGCTGTAAATAATTCAAG
ACACACATCGGTCCGAATCCTGTCTCCGAAGGGCCTTATTTTTTAACAAG
TACGAAGTACTACTGAGTTTAGTAGTCTTTCTCTAAAGCAGGATCTAAAT
ATAGAAGACTTGCAACGAACACGATTAGCGTTGCATCTTTTGTGTATATT
GAACTTCTACTGTACCGTAATAGTTCTCGAGAATGCCCCCCGCGGTGAAA
ATGCC
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Coding sequence (CDS) from alignment at P-littoralis_Contig207:110064..114318-

>mRNA_P-littoralis_Contig207.14.1 ID=mRNA_P-littoralis_Contig207.14.1|Name=mRNA_P-littoralis_Contig207.14.1|organism=Pylaiella littoralis U1_48|type=CDS|length=747bp|location=Sequence derived from alignment at P-littoralis_Contig207:110064..114318- (Pylaiella littoralis U1_48)
ATGGCTAGCCGCTCGAGCGCTGAGTCAGCTAAATCAGGGGCGACCCGCCA
GCTTCTCTGCAGCCGCTGCTACACGCGAGACTCGTGTATACAGTGTTGTG
GAAGACGTTTTTGTCTTCGGCACTTCCACACCAGTAACCACTCCAGCGAT
CATCCGCGGAAAGCGTTCGTCATGAACCAAAGAGCGCTTGATGACCAGCT
GCCTGCATTTCAAGAGATGTGGAGAGAGGCGTTTCAGTCAGTCGCGGACG
ACGTCGACAGATTATCGCGAGACGTCGGGAAGAAGGTCGCAGATGACCCC
CTTGCGTCGATCGGCATGGTCGTCAACCCAGCACCAAAAGGAAAGGGCGC
GGAAAAATCTCTAGGCGCTAGTTCGTCGGCGGCGAAGGGACGGAGGAAGG
ACGAGCACCGGAAAGAGGCAGTCGCGGCTGCGGCGGCGCAAGATCCGTTC
GCGCGGCGAAGAACTCGACCAAAGAGTTACTGGGCCGTGGGGAACGACTT
AGACTCAGCTTCAGAGGTGTGTAGTCGTACCACGGATGAGAGAGCCGCCG
CGATCGCGGCGGCCGCCCCTCGCGTGGGCGAGTACCAGTGCGAGTCATGC
GAGTCCGAGAACACGAGCTTTGACATCATAGGGGGCGCGGCTGTGGGCTC
CCGCAAGGCGGAAACCTTCGGCAGCAAGGATGCTCCAGAACTGATCCTCC
GGGTGTTGTGTCACGCGTGCGGCAACAACTGGCTCGAGGAGCGGTAG
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