mRNA_P-littoralis_Contig207.10.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig207.10.1
Unique NamemRNA_P-littoralis_Contig207.10.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig207.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig207contigP-littoralis_Contig207:93163..96080 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1792
Hectar predicted targeting categoryother localisation
Exons2
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.697304-UTR-P-littoralis_Contig207:93162..936031680790006.697304-UTR-P-littoralis_Contig207:93162..93603Pylaiella littoralis U1_48UTRP-littoralis_Contig207 93163..93603 +
1680790006.7198448-UTR-P-littoralis_Contig207:94729..948761680790006.7198448-UTR-P-littoralis_Contig207:94729..94876Pylaiella littoralis U1_48UTRP-littoralis_Contig207 94730..94876 +
1680790006.7459004-UTR-P-littoralis_Contig207:95080..960801680790006.7459004-UTR-P-littoralis_Contig207:95080..96080Pylaiella littoralis U1_48UTRP-littoralis_Contig207 95081..96080 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790006.7319388-CDS-P-littoralis_Contig207:94876..950801680790006.7319388-CDS-P-littoralis_Contig207:94876..95080Pylaiella littoralis U1_48CDSP-littoralis_Contig207 94877..95080 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig207.10.1prot_P-littoralis_Contig207.10.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig207 94877..95080 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig207.10.1

>prot_P-littoralis_Contig207.10.1 ID=prot_P-littoralis_Contig207.10.1|Name=mRNA_P-littoralis_Contig207.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=68bp
MGSTHPSNVIIPRTACKGGRTAKDACVDAHLDRQVAELERPYKEHGMRGL
CEHLKRSAGIDARPLGG*
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mRNA from alignment at P-littoralis_Contig207:93163..96080+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig207.10.1 ID=mRNA_P-littoralis_Contig207.10.1|Name=mRNA_P-littoralis_Contig207.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2918bp|location=Sequence derived from alignment at P-littoralis_Contig207:93163..96080+ (Pylaiella littoralis U1_48)
AGATGAGACAAATAAACAGCGCACGAGCTACAACAGTAGCAGTAGCAGAT
AGCTCGACAGGATAGTCATTGCCGTATGGAAGAAGGGTGGTGACTACATG
CGCATGTATTAACTGTATACACTTGTCCCAACGTGTGTTTGTACAGCAAC
CCCAAGCCCTCCGCCTGCCACCCTGCTGGGTGGGCCGAGGTCTGCCAGTG
GCCTTTACCACGTAAAGACCACCTTCGCCGACGACGATGGAGACACGAGC
ACAATCAGGCCTTGTATGGCAGGCATCCTTAGTTAAGTTGCTAGGAACTA
TTGTGATCGTGAGATCGGGGCAGCATCCCATCCATGTCAATGAACTTGGG
CAGCTGAACAACATACCACATGGGATTTGAACCCAGCGAATGGATTCTCC
GGAATGAACTCGGGAGCTCGGGAGCTACCGGTATTCAGCAGGTGAGAACG
CAGTCAATGGGGATAGCCCTGATACAGGAAAGCGGCTACTGTACACAAAT
TGCGTGGGCATGCGCAGATCTTTCGGGGAAAGGAGAAGGGTCAGACGAAT
CAGGACGGCCGAACCTTTCCGTGACTCAAGACAAGTACCGGGCTACACAC
AAGAAGTAGCCCGAGGGTCCGCCATGTTGTGACCGAAAAAAGAAAAGAAG
AAATGAGATGGATCTAGGAAATACCAGTAGATGATAGGAGGGGCCGGGCT
CGACGCAGGCTTCCAAGGGAAGCAGCGCGCGTACAGCGGGCGAGCACAAG
AGGGCACTTGACAGGGTGGTAATCTCAAACGTGCGGACAACAAGAGGGCA
CATGACAGGGTGGTAATCTCAAACGTGCGGACTCTGGCTGTGAAAGGGGA
TACGATTACAGCGTCCTGTATGAAGCAGCGAGAGTAGGTAGGTGCTGTGA
CATTGTGTTGGTGTGCAGGAGAGAAGAAGAAGAGCAGGACACACATAATC
GTACGAGATTCGAAATCCTCTGCTTGGGATCTACGAAGTAATACACAGTC
TGGTAGCACGGAGTAGGGATAGCCGTCAAAGTGCCAGTCTACCAATACGG
AGTACGCTGATGAGCACCTTATGGCAATGTTCTTTGAGATCATACATACA
AACATACATACATACACACCTTGTACATGAATACAGCAGTAGTAGGTGAG
AACGAAGCTGTCAAACCTTATGGCAGCTTTTCAATTCACGCACGGAAGCC
GAGACCAAACAACGTCCTGCAATATCCATAACCAATTGGTAGAAAGTATC
CCAATATTTTTTGTGCGTGCATGTGGTGGTAGACGCCAACGCGCCAACTG
GAGTGCACTAGGGTCATATGAGCGTGATGAGCTGAACGATAACGGTAGAG
TACTGCTGAGATTCCCAGAAACTCATGGTTACCCACAATCTGTACAGCCG
GCGAAGCGTACTCGGATTTTAAGTAGGGGTTACAGCGGTCCACAACCGCT
CTGTGCGGACCACCACGAAACACAAGTAATTGAGCCGGTACCAACAGAAG
GATGACATGTGCCGACGCCAAGTCATCGATAGGTTCCGAACACAACCTTG
ACGCGCAACTAAACCAGATAGCTTTCGCCGCCATGTGAGGACTCGCCGGA
GCTATCCTCGAACGGCACAGACATGCAGCCGCCCGAAGAACGGGTAACCC
GCTGGCCTGGGTGGTGTGTTAGCTCGGAAGTGAGAGCAGCAGTGGAGACA
GCCCTTGCCGAAAAATGGGCAGCACGCATCCCAGCAACGTGATCATCCCC
CGAACCGCTTGTAAGGGAGGGCGAACAGCAAAAGACGCTTGCGTCGATGC
CCACCTGGACAGACAAGTGGCGGAACTGGAGAGGCCTTACAAAGAGCATG
GTATGAGAGGCCTGTGCGAACATCTCAAGCGCTCAGCGGGCATTGATGCG
AGGCCATTGGGGGGATAGTAGTTCATCAAGGGTAAGGACGGCTTCTGTTG
GGAGCTCAGGGTGATATTGCACAAAATTGGGTGCCGATACAGCACACTCC
GACCTAGCTTCTTCCGCAGTCGACGCCGGCTTCCTGCACGTGGCCTTGAA
CGACCAGCCAAGCCTTTAAGCGCGCCCGTCTACCTGCTGCTTGAGCACGA
AACGTGAGCGCCGATGGTTTTCATTCCGTGCGGGACACTGCAGATAACCA
GTATGTAGACCTCGTAGAACTTCAGGCTTTATTTGTTGCCTCTGTCCACT
GCTCGCACTCGGCAGAGTCGATGGCGTCCTTGTAGCTGTTCGGGGTTTTG
ATGGTCTTGTTGCTTTTCTCCACGGCGGGTTGAGGCGCCGGCGGCGTACG
CGAAGTCTCCGGAAGAAACAGATGATTCTCCGTCCAAGTGAGCAAAATCA
GGTGTTTTCATGATGAATCGGCTTGCCGTTCCGGCGATCACTAGCATTTG
AGAGGAGGTGAGAGCGCTGGGATCCGGCTGTTGAGTGTGGGCGAGGCGTA
GTTCGCTAAGGATGCTATAATAGTCTACGACGCCCTCGGTGTCCGATATA
TTCCCTGCACCAGCTCATATCACCTGGAGATACCATGTAGCTCCTGTGCT
ACTGAGTGTGCGGCGTCGCCTGTAGTTGTTGGAGCAGTCCCTGGTGGTGC
GACCGCAGATTCGTTCTGCGTATGTAACCCTACTGTAGGCGTGGCAAGAG
ACCGGTGGGTGACGGAAGGAGTGCGTCAGCTCAACTCCTCCCGAACGGTG
TTGTCGAGTCTGAGATTGGGGGTTTCCCACCGCAGGAGCGGGCCCCACCT
CGGCCTGACGACCCAGGAAAGGTCGGATCACCGGCTCTGGTCATTTCCGA
TGTCAATCGAAGGAACTTCTCGTTCCCTGTAGTCGTCGTCGAGGTTTACG
CCTAAGGCAGAGTGTACGCTGGTGTTTATAATAAGGTACGTTGCGAATCT
CCACGATCGTACGTCTGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig207:93163..96080+

>mRNA_P-littoralis_Contig207.10.1 ID=mRNA_P-littoralis_Contig207.10.1|Name=mRNA_P-littoralis_Contig207.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=204bp|location=Sequence derived from alignment at P-littoralis_Contig207:93163..96080+ (Pylaiella littoralis U1_48)
ATGGGCAGCACGCATCCCAGCAACGTGATCATCCCCCGAACCGCTTGTAA
GGGAGGGCGAACAGCAAAAGACGCTTGCGTCGATGCCCACCTGGACAGAC
AAGTGGCGGAACTGGAGAGGCCTTACAAAGAGCATGGTATGAGAGGCCTG
TGCGAACATCTCAAGCGCTCAGCGGGCATTGATGCGAGGCCATTGGGGGG
ATAG
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