mRNA_P-littoralis_Contig206.59.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig206.59.1
Unique Name	mRNA_P-littoralis_Contig206.59.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: UPI00077A055A (uncharacterized protein LOC107357575 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A055A)

HSP 1 Score: 59.7 bits (143), Expect = 1.150e-8
Identity = 40/98 (40.82%), Postives = 49/98 (50.00%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVT----DCLEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            S I NEVVDW Y  H H++T    D L    P   Q    I  KG  +    N  GFIDGT+R  +RP    A Q  +Y+GH   H L +QSV   +G
Sbjct:  123 SMISNEVVDWMYTTHGHKITQWNHDLLN--PPALNQYADAISNKGAAL---ENCFGFIDGTVRPISRP---DANQRIVYNGHKRVHALKFQSVALPNG 212

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: A0A2B4S025_STYPI (DDE Tnp4 domain-containing protein n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S025_STYPI)

HSP 1 Score: 59.7 bits (143), Expect = 2.210e-8
Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVTDCLEFFAPRFPQMCKKIEAKGGMVCEGG----NFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            S + NEV+D+ YDNH HR+T   +        M  K+EA    V + G    N  GFIDGT+R   RPG    +   +Y+GH   H + +QSV   +G
Sbjct:  123 SMLTNEVIDYIYDNHHHRITAWNQDLL-----MPLKLEAYAAAVHDKGGALNNCFGFIDGTVRPICRPGEHQRI---VYNGHKRVHAIKFQSVTLPNG 212

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: A0A2B4RXG4_STYPI (TNFR-Cys domain-containing protein n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RXG4_STYPI)

HSP 1 Score: 59.7 bits (143), Expect = 2.400e-8
Identity = 37/98 (37.76%), Postives = 51/98 (52.04%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVTDCLEFFAPRFPQMCKKIEAKGGMVCEGG----NFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            S + NEV+D+ YDNH HR+T   +        M  K+EA    V + G    N  GFIDGT+R   RPG    +   +Y+GH   H + +QSV   +G
Sbjct:  123 SMLTNEVIDYIYDNHHHRITAWNQDLL-----MPLKLEAYAAAVHDKGGALNNCFGFIDGTVRPICRPGEHQRI---VYNGHKRVHAIKFQSVTLPNG 212

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: A0A6S7H0W5_PARCT (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7H0W5_PARCT)

HSP 1 Score: 59.3 bits (142), Expect = 3.240e-8
Identity = 36/96 (37.50%), Postives = 53/96 (55.21%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVTDCLE-FFAPRFPQM-CKKIEAKGGMVCEGGNFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            S I NEV+D+ Y++H HR+T+  E   +P   Q+   KI  KG  +    N  GF+DGT+R   RP +    Q  +Y+GH   H + +QSV   +G
Sbjct:  123 SMITNEVIDFIYEHHAHRITEWNERLLSPENLQIYADKIHTKGAALT---NCFGFVDGTVRPLCRPIKH---QRTVYNGHKRTHAIKFQSVTLPNG 212

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: UPI0010699B17 (uncharacterized protein LOC114526065 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI0010699B17)

HSP 1 Score: 57.8 bits (138), Expect = 7.200e-8
Identity = 38/98 (38.78%), Postives = 53/98 (54.08%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVTDCLE-FFAPRFPQM-CKKIEAKGGMVCEGGNFIGFIDGTLRRNTRPGRDPAVQEQ--LYDGHHCAHGLAWQSVVFAHG 282
            S I NEV+D+ Y++H HR+T   E   +P   Q+   KI  KG  +    N  GF+DGT+R   RP     VQ Q  +Y+GH   H + +QSV   +G
Sbjct:   13 SMITNEVIDFIYEHHAHRITAWNERLLSPENLQIYADKIHTKGAALT---NCFGFVDGTVRPLCRP-----VQHQRCVYNGHKRTHSIKFQSVTLPNG 102

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: A0A6S7HPK0_PARCT (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7HPK0_PARCT)

HSP 1 Score: 57.8 bits (138), Expect = 1.060e-7
Identity = 34/96 (35.42%), Postives = 53/96 (55.21%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVTDCLE-FFAPR-FPQMCKKIEAKGGMVCEGGNFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            S I N+VVD+ YD H HR+T   +   +P+   +  + +  KGG +    N  GFIDG +R   RPG+   +Q  +Y+GH   H L +Q++   +G
Sbjct:  123 SMITNQVVDFIYDQHAHRLTQWNDQLLSPQCLRRYAEAVARKGGALA---NCFGFIDGRVRAICRPGQ---MQRLVYNGHKRVHALKFQALALPNG 212

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: UPI000C0434FD (uncharacterized protein LOC111340935 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=UPI000C0434FD)

HSP 1 Score: 57.0 bits (136), Expect = 1.730e-7
Identity = 40/98 (40.82%), Postives = 49/98 (50.00%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVT----DCLEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            S I NEVVDW Y  H H++T    D L   A    Q    I  KG  +    N  GFIDGT+R  +RP    A Q  +Y+GH   H L +QSV   +G
Sbjct:  132 SMISNEVVDWMYTTHGHKITQWNHDLLNPAA--LNQYADAISNKGAALK---NCFGFIDGTVRPISRP---DANQRIVYNGHKRVHALKFQSVALPNG 221

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: A0A7D9HER8_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9HER8_PARCT)

HSP 1 Score: 56.6 bits (135), Expect = 1.990e-7
Identity = 35/94 (37.23%), Postives = 51/94 (54.26%), Query Frame = 1

Query:    7 IFNEVVDWAYDNHLHRVTDCLE-FFAPRFPQM-CKKIEAKGGMVCEGGNFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            IFNEV+D+ Y+ H HR+    + F +P   Q+    I  KG  +    N  GF+DGT+R+  RP      Q  +Y+GH   H + +QSVV  +G
Sbjct:  125 IFNEVLDFLYERHHHRLQSWNQPFLSPEILQIYADAIHNKGAPL---DNCFGFVDGTVRQIARP---KYHQRVMYNGHKRVHSIKFQSVVLPNG 212

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BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: A0A2B4RLZ4_STYPI (Craniofacial development protein 2 n=1 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4RLZ4_STYPI)

HSP 1 Score: 57.0 bits (136), Expect = 2.220e-7
Identity = 40/98 (40.82%), Postives = 49/98 (50.00%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVT----DCLEFFAPRFPQMCKKIEAKGGMVCEGGNFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            S I NEVVDW Y  H H++T    D L   A    Q    I  KG  +    N  GFIDGT+R  +RP    A Q  +Y+GH   H L +QSV   +G
Sbjct:  108 SMISNEVVDWMYTTHGHKITQWNHDLLNPAA--LNQYADAISNKGAALK---NCFGFIDGTVRPISRP---DANQRIVYNGHKRVHALKFQSVALPNG 197

[Close]

BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Match: A0A7D9D8G8_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D8G8_PARCT)

HSP 1 Score: 56.2 bits (134), Expect = 3.210e-7
Identity = 33/96 (34.38%), Postives = 54/96 (56.25%), Query Frame = 1

Query:    1 SRIFNEVVDWAYDNHLHRVTDCLE-FFAPR-FPQMCKKIEAKGGMVCEGGNFIGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG 282
            S I N+VVD+ YD H HR+T   +   +P+   +  + +  KGG +    N  G IDGT+R   RPG+   +Q+ +Y+GH   + L +Q++   +G
Sbjct:  100 SMITNQVVDFIYDQHAHRLTQWNDQLLSPQCLRRYAEAVARKGGALA---NCFGSIDGTVRAICRPGQ---IQQLVYNGHKRVYALKFQALALPNG 189

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig206.59.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 18


Match Name	E-value	Identity	Description
UPI00077A055A	1.150e-8	40.82	uncharacterized protein LOC107357575 n=1 Tax=Acrop...	[more]
A0A2B4S025_STYPI	2.210e-8	37.76	DDE Tnp4 domain-containing protein n=2 Tax=Styloph...	[more]
A0A2B4RXG4_STYPI	2.400e-8	37.76	TNFR-Cys domain-containing protein n=1 Tax=Styloph...	[more]
A0A6S7H0W5_PARCT	3.240e-8	37.50	DDE Tnp4 domain-containing protein (Fragment) n=1 ...	[more]
UPI0010699B17	7.200e-8	38.78	uncharacterized protein LOC114526065 n=1 Tax=Dendr...	[more]
A0A6S7HPK0_PARCT	1.060e-7	35.42	DDE Tnp4 domain-containing protein (Fragment) n=1 ...	[more]
UPI000C0434FD	1.730e-7	40.82	uncharacterized protein LOC111340935 n=1 Tax=Stylo...	[more]
A0A7D9HER8_PARCT	1.990e-7	37.23	DDE Tnp4 domain-containing protein n=1 Tax=Paramur...	[more]
A0A2B4RLZ4_STYPI	2.220e-7	40.82	Craniofacial development protein 2 n=1 Tax=Styloph...	[more]
A0A7D9D8G8_PARCT	3.210e-7	34.38	DDE Tnp4 domain-containing protein n=1 Tax=Paramur...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig206	contig	P-littoralis_Contig206:378338..379115 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	0
Start	0
Seed ortholog	4792.ETI50288
PFAMs	DDE_Tnp_4
Model size	285
Max annot lvl	2759\|Eukaryota
Hectar predicted targeting category	other localisation
Exons	2
Evalue	1.09e-05
EggNOG OGs	2D2NE@1\|root,2SNE2@2759\|Eukaryota
Description	DDE superfamily endonuclease
Cds size	282
COG category	S

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790005.1928225-CDS-P-littoralis_Contig206:378338..378499	1680790005.1928225-CDS-P-littoralis_Contig206:378338..378499	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig206 378339..378499 -
1680790005.2055962-CDS-P-littoralis_Contig206:378994..379115	1680790005.2055962-CDS-P-littoralis_Contig206:378994..379115	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig206 378995..379115 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig206.59.1	prot_P-littoralis_Contig206.59.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig206 378339..379115 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig206:378338..379115-
coding sequence from alignment at P-littoralis_Contig206:378338..379115-

protein sequence of mRNA_P-littoralis_Contig206.59.1

>prot_P-littoralis_Contig206.59.1 ID=prot_P-littoralis_Contig206.59.1|Name=mRNA_P-littoralis_Contig206.59.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=94bp
SRIFNEVVDWAYDNHLHRVTDCLEFFAPRFPQMCKKIEAKGGMVCEGGNF
IGFIDGTLRRNTRPGRDPAVQEQLYDGHHCAHGLAWQSVVFAHG

mRNA from alignment at P-littoralis_Contig206:378338..379115-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig206.59.1 ID=mRNA_P-littoralis_Contig206.59.1|Name=mRNA_P-littoralis_Contig206.59.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=778bp|location=Sequence derived from alignment at P-littoralis_Contig206:378338..379115- (Pylaiella littoralis U1_48)
AGTCGAATTTTCAACGAGGTGGTCGACTGGGCGTACGACAACCACCTGCA
CAGGGTGACTGACTGCCTGGAGTTCTTCGCTCCACGCTTCCCTCAGATGT
GCAAGAAGATAGAAGCGAAAGGTGACCATTTTAACGGCGTCGTACTCGGT
GTTCTCGTGAAGCAGAAAGCCAGGGTTGTGCCGCTGCCGCCGGTTGATAA
TTGCCCGCCTGAGCCGAGGCCCCCTTTTTTATGTTTGGCATACAGACACT
AGTACGATGTAAACACAAAGCCACGTGAAGATGATACACAACAAAGCAGC
AGCAGCCACCTTAGCTACAGCGGTTTTAACCTTGCCACAGCTGGTGGTTT
TGCGCGCACTGCTGGTTGTGCAATGAGGAGAGTTCGTTGCGCTCTCTGCC
TGTCTCTCTCTTTCTCTCTCTATCTGTGTGTGTTGTGGGCGCACGGTAGC
AGCAGCACACACAGAAGTGCAGCGTTTTGGACACAGAGCCCCAAATAACC
AAACGGACCTTAGTCATGGACGTAAAATTCATCAAGGAAAACAGGTCACA
CATATCAGAGCCTCTTGTGTGCGTTGCGTCGCTCCTTTTTTCGGTTTCGT
TTTCTTCGTACATCAGGTGGAATGGTATGCGAAGGCGGTAACTTCATCGG
GTTCATCGACGGGACACTCAGGAGGAACACTCGCCCAGGGAGGGACCCGG
CAGTGCAGGAGCAATTGTACGACGGTCACCACTGCGCCCACGGCCTTGCT
TGGCAATCCGTTGTCTTTGCTCACGGAA

Coding sequence (CDS) from alignment at P-littoralis_Contig206:378338..379115-

>mRNA_P-littoralis_Contig206.59.1 ID=mRNA_P-littoralis_Contig206.59.1|Name=mRNA_P-littoralis_Contig206.59.1|organism=Pylaiella littoralis U1_48|type=CDS|length=282bp|location=Sequence derived from alignment at P-littoralis_Contig206:378338..379115- (Pylaiella littoralis U1_48)
AGTCGAATTTTCAACGAGGTGGTCGACTGGGCGTACGACAACCACCTGCA
CAGGGTGACTGACTGCCTGGAGTTCTTCGCTCCACGCTTCCCTCAGATGT
GCAAGAAGATAGAAGCGAAAGGTGGAATGGTATGCGAAGGCGGTAACTTC
ATCGGGTTCATCGACGGGACACTCAGGAGGAACACTCGCCCAGGGAGGGA
CCCGGCAGTGCAGGAGCAATTGTACGACGGTCACCACTGCGCCCACGGCC
TTGCTTGGCAATCCGTTGTCTTTGCTCACGGA