mRNA_P-littoralis_Contig206.58.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig206.58.1
Unique NamemRNA_P-littoralis_Contig206.58.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: A0A6S7L092_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7L092_PARCT)

HSP 1 Score: 142 bits (359), Expect = 1.190e-39
Identity = 69/132 (52.27%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            RRHD+ +L  SG+  +L  +Q+ N   Y +YGD AY +  ++   FRG  LT AQK +NK +SKVRV+VEW FGK+ Q F F+DF KN KI LQ +AKYY +  LL N HTC+ GS T  YFD+  PSLE Y
Sbjct:  128 RRHDAFMLGVSGIMDKLRRIQQPNGEPYVIYGDPAYGVTDNILAPFRGVDLTVAQKEFNKRMSKVRVSVEWGFGKIAQYFAFLDFKKNQKILLQPIAKYYLVGSLLINCHTCLYGSQTSSYFDVQPPSLETY 259          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: A0A6P8IAB2_ACTTE (uncharacterized protein LOC116297948 n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8IAB2_ACTTE)

HSP 1 Score: 138 bits (348), Expect = 1.740e-39
Identity = 64/132 (48.48%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            +RHD+ +L  SGL  +L  L + N   Y VYGD AY +  ++   FRG  LT+ ++ +N  +S+VR  VEW FGK++Q F F+DF KNLK+ +Q VAKYY +A +LTN HTC+ GS+TG YF++  P LE Y
Sbjct:    8 KRHDAFMLGESGLAVKLQRLHKPNGEPYVVYGDPAYGLTRNILSPFRGACLTNDEQEFNTRMSQVRECVEWGFGKIIQXFAFLDFKKNLKVLMQPVAKYYLVATILTNCHTCLYGSLTGSYFELDPPELETY 139          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: A0A7D9J6I9_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J6I9_PARCT)

HSP 1 Score: 136 bits (342), Expect = 1.460e-38
Identity = 68/132 (51.52%), Postives = 89/132 (67.42%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            RRHDS +L  SGL  +L  + + +   Y +YGD AY + +++   FR  GLT A+KA+N+ +SKVRV+VE  FGK+ Q   F+DF KN KI LQ VAKYY +A LL N HTC+ GS TG YF++  PSLE Y
Sbjct:    8 RRHDSFMLGESGLEDQLRNIAKPDGEPYVLYGDPAYGLTNNILAPFREAGLTAAEKAFNRAMSKVRVSVELGFGKIAQYLAFLDFKKNFKILLQPVAKYYIVASLLINCHTCLYGSATGKYFNLDPPSLERY 139          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: A0A7D9E049_PARCT (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9E049_PARCT)

HSP 1 Score: 135 bits (341), Expect = 3.250e-38
Identity = 63/134 (47.01%), Postives = 91/134 (67.91%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQE--GNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            RRHD+ +L+ SG++ +L  L++  G   +Y +YGD AY +   +   FRG  LT+ QK +NK +SKVRV+VEW FGK+   F ++DF KNLK+ LQ VAKYY +  L+TN HTC+ GS++  +F++  P LE Y
Sbjct:   21 RRHDAFMLAASGVSAKLEQLEDARGRGERYVIYGDPAYGVTRSILAPFRGANLTEDQKKFNKRMSKVRVSVEWGFGKICTYFAYLDFKKNLKVLLQPVAKYYIVGALMTNCHTCLYGSLSTTFFEVDPPCLETY 154          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: UPI000A2A66BF (protein ALP1-like isoform X1 n=2 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A66BF)

HSP 1 Score: 140 bits (354), Expect = 1.290e-37
Identity = 68/132 (51.52%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            RRHD+ +L  SGL  +L  LQ  N   Y +YGD AY +  ++   FRG  LT  Q+ +N+ +SK+RVAVEW FGK+ Q F F+DF KN+K+ LQ V KYY +A LLTN HTC+  S TG YF++  PSLE Y
Sbjct:  263 RRHDAFMLGESGLADKLRPLQRPNGEPYVIYGDPAYGLTRNILAPFRGAQLTHDQQEFNRRMSKLRVAVEWGFGKICQQFAFLDFKKNMKVLLQPVGKYYVVAALLTNCHTCLYNSQTGRYFELYPPSLEDY 394          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: UPI00077A7035 (uncharacterized protein LOC107333236 n=1 Tax=Acropora digitifera TaxID=70779 RepID=UPI00077A7035)

HSP 1 Score: 136 bits (343), Expect = 7.490e-37
Identity = 63/132 (47.73%), Postives = 88/132 (66.67%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            +RHD+ +L  SGL  +L   Q  N   Y +YGD AY +  ++   +RG  LTD Q+ +N ++SK+R  VEW FGK+ Q+F F+DF KNLK+ LQ + KYY +AV+L N HTC+ GS TG YF++  P+LE Y
Sbjct:  167 KRHDAFMLGVSGLADKLRRFQRPNGEPYVIYGDPAYGLSRNILAPYRGVRLTDDQQEFNSQMSKMRCCVEWGFGKISQLFAFLDFKKNLKVLLQPIGKYYLVAVILINCHTCLYGSQTGAYFNLDPPTLETY 298          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: UPI00106B81BB (uncharacterized protein LOC114518718 n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106B81BB)

HSP 1 Score: 134 bits (337), Expect = 2.450e-36
Identity = 63/132 (47.73%), Postives = 86/132 (65.15%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            RRHD+ +L  S L  +L  +++ N   Y +YGD AY +  ++   FRG  LT  ++ +NK +SK+RV+VEW FGK+ Q F F+DF KN KI LQ + KYY +  LLTN HTC+ GS+T  YF +  PSLE Y
Sbjct:  130 RRHDAFILGVSNLADKLCRIRQPNGEPYIIYGDPAYGVTDNILAPFRGVFLTADEQEFNKRMSKLRVSVEWGFGKIAQYFAFLDFKKNQKILLQPIGKYYLVGTLLTNCHTCLYGSLTSSYFGVQPPSLETY 261          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: A0A6J8AX30_MYTCO (DDE Tnp4 domain-containing protein n=2 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8AX30_MYTCO)

HSP 1 Score: 134 bits (337), Expect = 1.510e-35
Identity = 65/133 (48.87%), Postives = 87/133 (65.41%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQEGNTTQ-YRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            RRHD+ LL  SG+ G L       T   Y +YGD AYP+ +H+ + FRG  ++ AQ  +NK++S VR  VEW FGK++ +F F+D+ KNLK+ LQ V KYY +  +L N HTC+ GS TG YFD+  PSLE Y
Sbjct:  211 RRHDAGLLRESGICGELQTHMTTPTGDIYVIYGDPAYPMTTHIIKTFRGGVISAAQARFNKKISAVRTCVEWTFGKILTLFAFLDYKKNLKLYLQPVGKYYLVGTILVNCHTCLYGSETGHYFDIDPPSLENY 343          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: UPI00077A71E6 (uncharacterized protein LOC107340903 n=3 Tax=Acropora TaxID=6127 RepID=UPI00077A71E6)

HSP 1 Score: 135 bits (339), Expect = 1.820e-35
Identity = 64/133 (48.12%), Postives = 89/133 (66.92%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAA-LQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            RRHD+ +L+ SGL  +L   L + N   Y +YGD AYP+  H+   FRG  LT  ++ +NK++S VR++VEW +GK+V+ F F+DF KNLK+ LQ V K Y +  +L N HTC+ GS TG +FD+  PSLE Y
Sbjct:  256 RRHDAFMLAESGLLPKLERRLNKPNGEPYVIYGDPAYPVRRHILAPFRGARLTPDEERFNKDMSTVRISVEWGYGKIVRYFAFLDFNKNLKVLLQPVGKMYVVGAILANCHTCLYGSQTGDFFDLDPPSLETY 388          
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Match: A0A6S7GNP4_PARCT (DDE Tnp4 domain-containing protein n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7GNP4_PARCT)

HSP 1 Score: 134 bits (336), Expect = 2.950e-35
Identity = 64/132 (48.48%), Postives = 87/132 (65.91%), Query Frame = 1
Query:    1 RRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEGLTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYYALAVLLTNAHTCISGSITGFYFDMTAPSLEAY 396
            RRHD+ +L  SGL   L  + + N   Y VYGD AY I  H+   F+G  LT+ Q+ +N+++S+VRV VEW FGK+ Q F ++DF KNLK+ LQ VAKYYA+  LL N HTC+ GS+   +F++  P LE Y
Sbjct:  227 RRHDAFMLGVSGLLPLLERIIKPNGEPYVVYGDPAYGISRHIISPFKGAHLTEPQQQFNRDMSEVRVCVEWGFGKIAQYFAYLDFQKNLKVLLQPVAKYYAVGALLINCHTCLYGSVASSFFNLDPPLLEDY 358          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig206.58.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6S7L092_PARCT1.190e-3952.27DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
A0A6P8IAB2_ACTTE1.740e-3948.48uncharacterized protein LOC116297948 n=1 Tax=Actin... [more]
A0A7D9J6I9_PARCT1.460e-3851.52DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]
A0A7D9E049_PARCT3.250e-3847.01DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
UPI000A2A66BF1.290e-3751.52protein ALP1-like isoform X1 n=2 Tax=Exaiptasia di... [more]
UPI00077A70357.490e-3747.73uncharacterized protein LOC107333236 n=1 Tax=Acrop... [more]
UPI00106B81BB2.450e-3647.73uncharacterized protein LOC114518718 n=1 Tax=Dendr... [more]
A0A6J8AX30_MYTCO1.510e-3548.87DDE Tnp4 domain-containing protein n=2 Tax=Mytilus... [more]
UPI00077A71E61.820e-3548.12uncharacterized protein LOC107340903 n=3 Tax=Acrop... [more]
A0A6S7GNP4_PARCT2.950e-3548.48DDE Tnp4 domain-containing protein n=1 Tax=Paramur... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig206contigP-littoralis_Contig206:377890..378297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog7668.SPU_016560-tr
PFAMsDDE_Tnp_4
Model size410
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.76e-29
EggNOG OGs2AWDH@1|root,2RZYI@2759|Eukaryota,3A38W@33154|Opisthokonta,3BS4I@33208|Metazoa,3D9UV@33213|Bilateria
DescriptionDDE superfamily endonuclease
Cds size408
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790005.158714-CDS-P-littoralis_Contig206:377889..3782971680790005.158714-CDS-P-littoralis_Contig206:377889..378297Pylaiella littoralis U1_48CDSP-littoralis_Contig206 377890..378297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig206.58.1prot_P-littoralis_Contig206.58.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig206 377890..378297 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig206.58.1

>prot_P-littoralis_Contig206.58.1 ID=prot_P-littoralis_Contig206.58.1|Name=mRNA_P-littoralis_Contig206.58.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=136bp
RRHDSLLLSRSGLNGRLAALQEGNTTQYRVYGDAAYPILSHVDRGFRGEG
LTDAQKAYNKELSKVRVAVEWQFGKVVQIFPFVDFAKNLKIRLQAVAKYY
ALAVLLTNAHTCISGSITGFYFDMTAPSLEAYFAF*
back to top

mRNA from alignment at P-littoralis_Contig206:377890..378297-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig206.58.1 ID=mRNA_P-littoralis_Contig206.58.1|Name=mRNA_P-littoralis_Contig206.58.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig206:377890..378297- (Pylaiella littoralis U1_48)
CGGCGACACGACTCCCTTCTTCTGTCGAGGAGCGGACTGAACGGGAGACT CGCCGCTCTGCAGGAAGGCAACACTACGCAGTACAGGGTGTACGGCGATG CTGCATACCCCATCTTGTCTCACGTCGACCGGGGTTTCCGCGGAGAGGGT CTCACAGATGCGCAGAAGGCCTACAACAAGGAGCTTTCTAAGGTCAGGGT GGCGGTGGAGTGGCAGTTCGGCAAGGTCGTGCAGATTTTCCCGTTTGTCG ACTTCGCGAAAAACCTGAAGATCAGGCTGCAGGCGGTCGCGAAGTACTAC GCCTTGGCTGTACTGCTCACCAACGCGCACACCTGCATCTCCGGGAGCAT CACCGGCTTCTACTTCGACATGACCGCGCCGTCACTAGAGGCGTACTTTG CGTTCTAG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig206:377890..378297-

>mRNA_P-littoralis_Contig206.58.1 ID=mRNA_P-littoralis_Contig206.58.1|Name=mRNA_P-littoralis_Contig206.58.1|organism=Pylaiella littoralis U1_48|type=CDS|length=408bp|location=Sequence derived from alignment at P-littoralis_Contig206:377890..378297- (Pylaiella littoralis U1_48)
CGGCGACACGACTCCCTTCTTCTGTCGAGGAGCGGACTGAACGGGAGACT
CGCCGCTCTGCAGGAAGGCAACACTACGCAGTACAGGGTGTACGGCGATG
CTGCATACCCCATCTTGTCTCACGTCGACCGGGGTTTCCGCGGAGAGGGT
CTCACAGATGCGCAGAAGGCCTACAACAAGGAGCTTTCTAAGGTCAGGGT
GGCGGTGGAGTGGCAGTTCGGCAAGGTCGTGCAGATTTTCCCGTTTGTCG
ACTTCGCGAAAAACCTGAAGATCAGGCTGCAGGCGGTCGCGAAGTACTAC
GCCTTGGCTGTACTGCTCACCAACGCGCACACCTGCATCTCCGGGAGCAT
CACCGGCTTCTACTTCGACATGACCGCGCCGTCACTAGAGGCGTACTTTG
CGTTCTAG
back to top