mRNA_P-littoralis_Contig206.39.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_P-littoralis_Contig206.39.1
Unique Name	mRNA_P-littoralis_Contig206.39.1
Type	mRNA
Organism	Pylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))

Homology

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5JR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR14_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.000e-42
Identity = 75/103 (72.82%), Postives = 91/103 (88.35%), Query Frame = 1

Query:  103 RPRYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRH 411
            R  YAR+ GLDK+AGYI+SADDSKLEEL++++RFF+KWR +L+EKTT+GD TWKKHFITE+SWTDIRV ILGFVSMCRYLFE+DSRFKVS  R  P ++N R+
Sbjct:  554 RSEYARRNGLDKEAGYISSADDSKLEELINMVRFFDKWRSSLQEKTTMGDETWKKHFITEFSWTDIRVCILGFVSMCRYLFEEDSRFKVSPRRPWPHFINQRN 656

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5JTX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTX6_9PHAE)

HSP 1 Score: 138 bits (347), Expect = 6.130e-37
Identity = 67/99 (67.68%), Postives = 77/99 (77.78%), Query Frame = 1

Query:  112 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPR 408
            YARK GLDK  GY  SADDSKLE LMDILRFF++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRYLFE DSRFK+    D P ++N R
Sbjct:   44 YARKNGLDKMVGYTGSADDSKLEGLMDILRFFDEWRASLEARPTLGD--WKAHFITDHSWTDIRVCILGTVSMCRYLFEKDSRFKIYPLSDVPHFINLR 140

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5JRH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRH8_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.210e-34
Identity = 65/105 (61.90%), Postives = 79/105 (75.24%), Query Frame = 1

Query:  112 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQVS 426
            YARK GLDK   YI SADDSKLEE+MDIL  F++WR +LE + T+GD  WK HFIT++SWTDIRV ILG VSMCRY+FE+DS FK+    D P ++N R+  Q S
Sbjct:  434 YARKNGLDKMVSYIRSADDSKLEEVMDILLLFDEWRASLEARPTLGDGAWKAHFITDHSWTDIRVCILGTVSMCRYVFEEDSTFKIPPLSDVPHFINLRYIGQAS 538

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5JZW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZW9_9PHAE)

HSP 1 Score: 111 bits (278), Expect = 4.410e-28
Identity = 51/76 (67.11%), Postives = 60/76 (78.95%), Query Frame = 1

Query:  145 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKVS 372
            GYI S DDSKL+ELMDIL FF++WR +LE + T+GD  WK HFIT++ WTD RV ILG V MCRYL E DSRFK+S
Sbjct:    3 GYIRSTDDSKLDELMDILWFFDEWRASLEARPTLGDGAWKAHFITDHLWTDSRVCILGTVRMCRYLIEKDSRFKIS 78

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5KH17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH17_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 1.830e-25
Identity = 50/71 (70.42%), Postives = 58/71 (81.69%), Query Frame = 1

Query:  112 YARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFV 324
            YARK GLDK  GYI SADDSKLEELMDILRFF++WR +LE + T+G   WK +FIT++SWTDIRV ILG V
Sbjct:   31 YARKNGLDKMVGYIRSADDSKLEELMDILRFFDEWRASLEARPTLGGRAWKAYFITDHSWTDIRVCILGTV 101

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5K5I6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5I6_9PHAE)

HSP 1 Score: 99.8 bits (247), Expect = 9.460e-22
Identity = 54/116 (46.55%), Postives = 74/116 (63.79%), Query Frame = 1

Query:  103 RPRYARKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEK---TTVGD-VTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDDSRFKV-SRPRDTPRYVNPRHHCQVSCAH 435
            R +  RK G  K  G I S + + ++ L++IL FF+ W+  LE K   +  GD + WKKHFIT  SW D+R+SILGFVSMCRYLFED  RF++ S   +  R+++PR+  Q  C H
Sbjct:   69 RSKVDRKDGSKKMVGCIRSFESAPMDRLLEILEFFDDWQSTLERKHIPSGEGDKLGWKKHFITHQSWFDLRLSILGFVSMCRYLFEDPERFQIDSLSPNCRRFLSPRNCSQDICEH 184

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5JNK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNK0_9PHAE)

HSP 1 Score: 86.3 bits (212), Expect = 7.360e-19
Identity = 41/61 (67.21%), Postives = 51/61 (83.61%), Query Frame = 1

Query:  145 GYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVS 327
            GYI SAD SKLE LMDILRFF++WR +LE + T+GD TW+ HFIT++SWTDI+V ILG V+
Sbjct:    3 GYIRSADRSKLE-LMDILRFFDEWRASLEARPTLGDGTWEAHFITDHSWTDIQVCILGTVA 62

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5K7Z3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7Z3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.080e-17
Identity = 42/79 (53.16%), Postives = 57/79 (72.15%), Query Frame = 1

Query:  118 RKKGLDKKAGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDIRVSILGFVSMCRYLFEDD 354
            RK+G +K+ GYIT AD   L  L++IL FF+ W+ +LE     G   W  HFIT+YSWTD+R +ILGFV+MCRY+F+D+
Sbjct:  483 RKQGGNKRKGYITGADSPLLGRLLEILEFFDSWQVSLEAH--FGPKEWANHFITDYSWTDMRTTILGFVAMCRYVFKDE 559

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5K095_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K095_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.600e-15
Identity = 34/49 (69.39%), Postives = 41/49 (83.67%), Query Frame = 1

Query:  142 AGYITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYS 288
            AGYI SADDSKLEELMDILRF  +WR +LE ++T+GD  WK HFIT++S
Sbjct:    2 AGYIRSADDSKLEELMDILRFLGEWRASLEARSTLGDCAWKAHFITDHS 50

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BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Match: A0A6H5L2C2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2C2_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 2.790e-5
Identity = 23/28 (82.14%), Postives = 25/28 (89.29%), Query Frame = 2

Query:  563 QDVVENRFGHMRDGLGSHRNPTATQAKE 646
            +D VE+RFGH R GLGSHRNPTATQAKE
Sbjct:   66 RDPVEHRFGHTRQGLGSHRNPTATQAKE 93

The following BLAST results are available for this feature:

BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot

BLAST of mRNA_P-littoralis_Contig206.39.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 11


Match Name	E-value	Identity	Description
A0A6H5JR14_9PHAE	1.000e-42	72.82	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JTX6_9PHAE	6.130e-37	67.68	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JRH8_9PHAE	4.210e-34	61.90	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JZW9_9PHAE	4.410e-28	67.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5KH17_9PHAE	1.830e-25	70.42	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K5I6_9PHAE	9.460e-22	46.55	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5JNK0_9PHAE	7.360e-19	67.21	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K7Z3_9PHAE	1.080e-17	53.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5K095_9PHAE	5.600e-15	69.39	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
A0A6H5L2C2_9PHAE	2.790e-5	82.14	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
P-littoralis_Contig206	contig	P-littoralis_Contig206:303953..305638 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Pylaiella littoralis U1_48 OGS1.0	2022-07-08

Properties


Property Name	Value
Stop	1
Start	1
Model size	646
Hectar predicted targeting category	other localisation
Exons	2
Cds size	456

Relationships

The following UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790004.7916863-UTR-P-littoralis_Contig206:303952..304142	1680790004.7916863-UTR-P-littoralis_Contig206:303952..304142	Pylaiella littoralis U1_48	UTR	P-littoralis_Contig206 303953..304142 -

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1680790004.8006487-CDS-P-littoralis_Contig206:304142..304487	1680790004.8006487-CDS-P-littoralis_Contig206:304142..304487	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig206 304143..304487 -
1680790004.8095865-CDS-P-littoralis_Contig206:305527..305638	1680790004.8095865-CDS-P-littoralis_Contig206:305527..305638	Pylaiella littoralis U1_48	CDS	P-littoralis_Contig206 305528..305638 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_P-littoralis_Contig206.39.1	prot_P-littoralis_Contig206.39.1	Pylaiella littoralis U1_48	polypeptide	P-littoralis_Contig206 304143..305638 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at P-littoralis_Contig206:303953..305638-
coding sequence from alignment at P-littoralis_Contig206:303953..305638-

protein sequence of mRNA_P-littoralis_Contig206.39.1

>prot_P-littoralis_Contig206.39.1 ID=prot_P-littoralis_Contig206.39.1|Name=mRNA_P-littoralis_Contig206.39.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=152bp
MLSTPEKDEGGPRTRSHTTPTTSDRALESDRCAPRPRYARKKGLDKKAGY
ITSADDSKLEELMDILRFFEKWRCNLEEKTTVGDVTWKKHFITEYSWTDI
RVSILGFVSMCRYLFEDDSRFKVSRPRDTPRYVNPRHHCQVSCAHSVLCC
G*

mRNA from alignment at P-littoralis_Contig206:303953..305638-

Legend: polypeptideCDSUTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_P-littoralis_Contig206.39.1 ID=mRNA_P-littoralis_Contig206.39.1|Name=mRNA_P-littoralis_Contig206.39.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1686bp|location=Sequence derived from alignment at P-littoralis_Contig206:303953..305638- (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGAGTAAGCCTACTTCACCATAGAGTCCGGGGTGGGGGTGGC
GGAGCATCTCTCCACCGTGAAGTAATGTTGTTGAGGAACACACAGAGTTC
CTCATAGCTTTTTTAATAGGTGTCCCGCGTAGCACTAGCGTCGAGGGTTG
ATGCCTTCATCGACATCTTCAACGGCAAGTGATAGGTGTTCGTATTGTCG
CAGTATGTAGAGGGGCCTGTCGCGTGACTATGTTCCGTGCTCTCCTTTTT
CCCCTGAAGTTTCCCGGCACCCGGGTACACTCTTTCTCTATACAGGGGGG
GTTGTTCCGAAGTCCGGAAATACCGGCAAACGCCCTGTCTCCCGGCGCAG
CTCGTGACGGAGATTTTTTTTTTTTAGCTTGATTGTTGAGTTTTCATGGG
CTAAAAACCCGCCACACTTGTGTTCTAACGGGATTGAACAAATATCGTAA
TTTGCCAATATAATCGCTTATTATTGTTTTCAAATAAGTCTCTTAAACAG
AGATATCGCACCAAAACAGCACATCGAAGACCAATATACTGTTTTATTCG
AGACAACTATTCTTTCGATTTCAAAATAGACTGCGGCAAACTATTCCTCT
CATCATTGCCGCGAACTGTTTGTGGCGTTGTTGGTGGTGGTGCAGGGGGT
GGTGTTTGTGTCGTTTTTGTGTGATAAAATGTGCTGTGTAATGGCTGCAA
TGGATAGATTTCATGACATAGTATGCGGATGCCGGGGTGCGGAGTGCAGG
ATGGGGGCTCAGTGGTGAGTTTTGGGGCCCCGTGGAACGATTCTCGCAAC
AAATGATGCAATTAGCCAAAAACATAAATAACTCTGCAGCTACGTATCGA
CATATCTCGACGAGGCGATCACTAATATTGTTTCACGTCCCAACGCGATT
GAACAAAAAGGAGAGCACGGACCTACTTGTTTTTTTTTTTTTATATATTT
CCTCGCGCAATGTACACACTCTGTGCGCGTCGTTTGTCTCTTCCCACACG
GCCCCATGTACGTGTACGTGTATATATTCAGGAAACTTCGGCCGCTCGGA
GTACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTACATTACATCGG
CCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCGTTTTTTCGAG
AAGTGGCGGTGCAATCTGGAGGAGAAGACGACGGTGGGCGACGTCACCTG
GAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATCCGGGTGTCCA
TCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGATGATTCGAGG
TTCAAGGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCAACCCGCGGCA
CCATTGCCAGGTATCATGTGCACACAGCGTACTATGTTGTGGCTGATTCT
GCCTGTGGGTCTAGTGTGCGTCCGGTCCGACTCCGAGGAGCATTTTCTGA
AATTGCGTCGACCTCTCCCCCCTGTTTTCCACCACTTCGCCTTCTAACCC
CACAGGATGTCGTGGAGAACCGCTTCGGGCACATGCGCGACGGCCTCGGG
TCGCACAGAAACCCGACGGCTACGCAAGCGAAGGAG

Coding sequence (CDS) from alignment at P-littoralis_Contig206:303953..305638-

>mRNA_P-littoralis_Contig206.39.1 ID=mRNA_P-littoralis_Contig206.39.1|Name=mRNA_P-littoralis_Contig206.39.1|organism=Pylaiella littoralis U1_48|type=CDS|length=456bp|location=Sequence derived from alignment at P-littoralis_Contig206:303953..305638- (Pylaiella littoralis U1_48)
ATGCTTTCGACGCCGGAGAAGGATGAGGGAGGGCCGAGGACACGATCGCA
CACCACGCCCACCACGAGTGATCGTGCATTGGAGAGCGACCGCTGCGCTC
CGAGACCACGATACGCGCGCAAGAAAGGCCTCGACAAGAAAGCGGGCTAC
ATTACATCGGCCGACGACTCCAAACTAGAAGAACTCATGGACATCTTGCG
TTTTTTCGAGAAGTGGCGGTGCAATCTGGAGGAGAAGACGACGGTGGGCG
ACGTCACCTGGAAGAAGCACTTCATCACGGAGTACTCGTGGACCGACATC
CGGGTGTCCATCCTTGGCTTCGTCAGTATGTGCCGATACTTGTTCGAGGA
TGATTCGAGGTTCAAGGTCTCCCGCCCGCGCGACACGCCCCGCTACGTCA
ACCCGCGGCACCATTGCCAGGTATCATGTGCACACAGCGTACTATGTTGT
GGCTGA