mRNA_P-littoralis_Contig206.3.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig206.3.1
Unique NamemRNA_P-littoralis_Contig206.3.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig206.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig206contigP-littoralis_Contig206:18744..19345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size284
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790003.1053016-UTR-P-littoralis_Contig206:18743..187511680790003.1053016-UTR-P-littoralis_Contig206:18743..18751Pylaiella littoralis U1_48UTRP-littoralis_Contig206 18744..18751 -
1680790003.1386611-UTR-P-littoralis_Contig206:19315..193451680790003.1386611-UTR-P-littoralis_Contig206:19315..19345Pylaiella littoralis U1_48UTRP-littoralis_Contig206 19316..19345 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790003.118739-CDS-P-littoralis_Contig206:18751..188761680790003.118739-CDS-P-littoralis_Contig206:18751..18876Pylaiella littoralis U1_48CDSP-littoralis_Contig206 18752..18876 -
1680790003.1294806-CDS-P-littoralis_Contig206:19194..193151680790003.1294806-CDS-P-littoralis_Contig206:19194..19315Pylaiella littoralis U1_48CDSP-littoralis_Contig206 19195..19315 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig206.3.1prot_P-littoralis_Contig206.3.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig206 18752..19315 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig206.3.1

>prot_P-littoralis_Contig206.3.1 ID=prot_P-littoralis_Contig206.3.1|Name=mRNA_P-littoralis_Contig206.3.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=82bp
MTTTCRVRSGRDASRSERTRSSLPGGRNFRRKVLPLFDTRGIPRAPSRAS
RLLPEVGGAVEGEEMVRLTEERMQEAVRVSQ*
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mRNA from alignment at P-littoralis_Contig206:18744..19345-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig206.3.1 ID=mRNA_P-littoralis_Contig206.3.1|Name=mRNA_P-littoralis_Contig206.3.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=602bp|location=Sequence derived from alignment at P-littoralis_Contig206:18744..19345- (Pylaiella littoralis U1_48)
GGTGCTGCTACTTTGTGGCCAGAGGAGGTGATGACGACGACGTGCCGCGT
GCGAAGCGGACGAGATGCATCAAGGAGCGAAAGAACAAGAAGCAGTCTGC
CTGGTGGACGCAACTTCAGGAGGAAGGTCTTGCCGTTGTTCGATACTCGG
GGTAAGCTTAGCTTGGGGTTGTGTGGAGTAAACAGCAATCCGGCCAACAC
AGCCTGGGATGAATAGCTTGTATTATCAACCTCCTTCGGGGGAGGGCACA
CGGCATACCAGAAAAGGAGAGAGTCGCAAACGCGGCGCAATCACATCACG
CAATCACACGAATCGAATTTCCGAGACAAGATTCACAAAGGAAAATACAC
CGAAATTCCGTGATACCCATAACCCAACAGAACGCAGTTTCCGTAGATCT
GTAAAATCCGTCCATCATGCCATACTACGAGCATATTCAACAGCCGTGCC
CACGTCCGATGTGGCGAAGGTATTCCGAGAGCGCCTTCGCGTGCCTCACG
CCTTCTTCCTGAGGTTGGTGGAGCTGTCGAGGGAGAAGAAATGGTTCGAC
TAACGGAGGAGCGGATGCAAGAGGCCGTGAGGGTATCCCAGTAGAGCTCA
AG
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Coding sequence (CDS) from alignment at P-littoralis_Contig206:18744..19345-

>mRNA_P-littoralis_Contig206.3.1 ID=mRNA_P-littoralis_Contig206.3.1|Name=mRNA_P-littoralis_Contig206.3.1|organism=Pylaiella littoralis U1_48|type=CDS|length=246bp|location=Sequence derived from alignment at P-littoralis_Contig206:18744..19345- (Pylaiella littoralis U1_48)
ATGACGACGACGTGCCGCGTGCGAAGCGGACGAGATGCATCAAGGAGCGA
AAGAACAAGAAGCAGTCTGCCTGGTGGACGCAACTTCAGGAGGAAGGTCT
TGCCGTTGTTCGATACTCGGGGTATTCCGAGAGCGCCTTCGCGTGCCTCA
CGCCTTCTTCCTGAGGTTGGTGGAGCTGTCGAGGGAGAAGAAATGGTTCG
ACTAACGGAGGAGCGGATGCAAGAGGCCGTGAGGGTATCCCAGTAG
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