mRNA_P-littoralis_Contig206.23.7 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig206.23.7
Unique NamemRNA_P-littoralis_Contig206.23.7
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: D7FXC0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXC0_ECTSI)

HSP 1 Score: 418 bits (1074), Expect = 3.100e-138
Identity = 290/415 (69.88%), Postives = 317/415 (76.39%), Query Frame = 1 
Query:   13 MPRLADPARLQKEIDAQKKRAEALALLNSSGGEQHFKPGEVRKAREGKQSDNTLEVVTLRRAQQSYQELSAKERLLRQQNSVREGVEKKQSAXXXXXXXXXXXXXXXXXXVGSGGNLREGWKEIKDAKTGSTYYWNKESNATSWERPVNPP--------GGVSKANDNL--------AGSGSPGGVGDGVGGAAARKIGEGGGGTPLPPLPAGWKEIKDPKGGAVYFWNQSTRATTWVRPTGPPA--SXXXXXXXXXXATAGLPEGWKAVTHAATGQTHYVHEATGQRSFSLPGSQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGSERHGRRDNDRPRKKGRVA--IDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGRAPTDAETAGPRQR 1197
            M RL DPARLQKEI+AQKKRAEALALL+SSGGE+HFKPGE+RKAR+GK  DNTLEVVTLR+AQQ+Y E SAKERLL+QQNSVREGV++KQ+   XXXXXXXXXXXXXX      G L  GWKEIKD  +GSTYYWNK SNATSW RPV PP        GG                +     GGV +G                   PLPAGWKEIKDPK G VYFWN++  ATTWVRPTGP +  S     XXXX +T GLPEGWKAVTHAATGQTHYVHEA+G+RSF+LPGS+P    XXXXXXXXXXXXXXXXXXXXXXXXXX+ARGSE   R D++RP+KKGR +  IDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGR PTDAETAGPRQR
Sbjct:    1 MSRLTDPARLQKEIEAQKKRAEALALLSSSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKAQQTYLEQSAKERLLQQQNSVREGVQRKQAGGGXXXXXXXXXXXXXX------GPLPGGWKEIKDPNSGSTYYWNKSSNATSWVRPVVPPHEAPEPERGGAXXXXXXXXXXXXXGESXXXXDGGVRNGXXXXXXXXXXXXXX-XXXXPLPAGWKEIKDPKSGGVYFWNKAKGATTWVRPTGPASGDSADGGSXXXXGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEPPDASXXXXXXXXXXXXXXXXXXXXXXXXXXSARGSEGRNRGDSNRPKKKGRGSWEIDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGRTPTDAETAGPRQR 408
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: A0A6H5L5A1_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5A1_9PHAE)

HSP 1 Score: 304 bits (778), Expect = 9.760e-95
Identity = 186/294 (63.27%), Postives = 211/294 (71.77%), Query Frame = 1 
Query:   13 MPRLADPARLQKEIDAQKKRAEALALLNSSGGEQHFKPGEVRKAREGKQSDNTLEVVTLRRAQQSYQELSAKERLLRQQNSVREGVEKKQSAXXXXXXXXXXXXXXXXXXVGSGGNLREGWKEIKDAKTGSTYYWNKESNATSWERPVNPPGGVSKANDNLAGSGSPGGVGDGVGG-------------AAARKIGEGGGGTPLPPLPAGWKEIKDPKGGAVYFWNQSTRATTWVRPTGPPA--SXXXXXXXXXXATAGLPEGWKAVTHAATGQTHYVHEATGQRSFSLPGSQP 849
            M RL DPARLQKEI+AQKKRAEALALL+SSGGE+HFKPGE+RKAR+GK  DNTLEVVTLR+AQQ+Y E SAKERLL+QQNSVREGV++KQ+     XXXXXXXXX        GG L EGWKEIKD K+GSTYYWNK SNATSW RPV PP    +A +   G GS                        AA   GEGGG +   PLPAGWKE+KDPK G VYFWN++  ATTW+RPTGP +  S          +T GLPEGWKAVTHAATGQTHYVHEA+G+RSF+LPGS+P
Sbjct:    1 MSRLTDPARLQKEIEAQKKRAEALALLSSSGGERHFKPGEIRKARDGKDGDNTLEVVTLRKAQQTYLEQSAKERLLQQQNSVREGVQRKQAGGGSSXXXXXXXXX--------GGLLPEGWKEIKDPKSGSTYYWNKSSNATSWVRPVVPP---HEAPEPERGGGSKXXXXXXXXXXXXXXXXXXXXXXGAAPSTGEGGGESTPSPLPAGWKEVKDPKSGGVYFWNKAKGATTWIRPTGPASRGSADGVSASGGGSTPGLPEGWKAVTHAATGQTHYVHEASGKRSFTLPGSEP 283
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: A0A7S2W7K5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W7K5_9STRA)

HSP 1 Score: 137 bits (346), Expect = 5.830e-32
Identity = 126/394 (31.98%), Postives = 160/394 (40.61%), Query Frame = 1 
Query:   37 RLQKEIDAQKKRAEALALL--NSSGGEQHFKPGEVRKAREGKQSDNTLEVVTLRRA------QQSYQELSAKERLLRQQNSVREGVEKKQSAXXXXXXXXXXXXXXXXXXVGSGGNLREGWKEIKDAKTGSTYYWNKESNATSWERPVNPPGGVSKANDNLAGSGSPGGVGDGVGGAAARKIGEGGGGTPLPPLPAGWKEIKDPKGGAVYFWNQSTRATTWVRPTGPPASXXXXXXXXXXATAGLPEGWKAVTHAATGQTHYVHEATGQRSFSLPGSQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGSERHGRRDNDRPRKKGRVA------------IDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGR 1158
            +L+KE+DAQ KRAEALA L  N  G  +  K G+V  A    Q DNTLEV   RR       Q   Q L AK  L++QQ ++R                                 L   WK ++D ++G TYYWN+ +N TSWERP      V  A D  A               A ++  +G GG    P P                                             A A LP GWK +THAATGQ  Y H +T ++ ++ P S+  +                              +  +  G   +    KKG+ A            +DP+DPTG+   KWS G    GERMADSTASGPLWQQRPYPAPG ILRG+
Sbjct:   70 KLKKELDAQAKRAEALAYLQKNGCGPSEWEKTGKV--ASISGQRDNTLEVTKERRRKXXXXXQARLQGLKAK--LMQQQEALR--------------LKLGSGAASGKEPASGRSALPSWWKAVQDEESGDTYYWNELTNETSWERPE-----VGSAEDEAA---------------AGKESAKGSGGADQAPGPG--------------------------------------------ANASLPSGWKQMTHAATGQAIYEHTSTKEKRWTRPTSEHDKTDIKPTAVAEDVPKDKATVGFGFSMNLKGGKRKDPSGGGKD----KKGKSAKKTKFDFQKSGKVDPMDPTGEDTSKWSQGSSNPGERMADSTASGPLWQQRPYPAPGAILRGK 377
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: W7THS9_9STRA (Ubiquitin-protein ligase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7THS9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.150e-21
Identity = 78/229 (34.06%), Postives = 95/229 (41.48%), Query Frame = 1 
Query:  589 PLPAGWKEIKDPKG-GAVYFWNQSTRATTWVRPTGP---------------------------------------PASXXXXXXXXXXATAGLPEGWKAVTHAATGQTHYVHEATGQRSFSLPGSQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGSERHGRRDNDRPRKKGRVAIDPLDPTGKTG-GKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILR 1152
            PLPAGW+ + DP+G G  Y+W+  T  TTW RP+                                         P                LPEGWK V HAATGQ  YVH A+G + +S P                                   A+G +  G +      K+GR  IDPLDPTG  G G W+ GL   G+RMADSTA G LWQQRP PAPG +L+
Sbjct:  181 PLPAGWEAVMDPQGSGDYYYWHAGTNVTTWERPSSQIPTAVPSGDTGVTTLKNHTSGSFLSSETSGGGEPGHGREPTGRGGTELPRANDLGSLPEGWKEVKHAATGQICYVHAASGVKRWSRP-----TIAGDVTSDIQQTRQTHLEAARQAELAQTGAKGGKDGGGK------KRGREEIDPLDPTGGRGSGGWTQGLGG-GDRMADSTAGGSLWQQRPLPAPGAVLK 397
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: A0A8J2X3M8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X3M8_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 5.780e-18
Identity = 70/156 (44.87%), Postives = 89/156 (57.05%), Query Frame = 1 
Query:  733 ATAGLPEGWKAVTHAATGQTHYVHEATGQRSFSLPGSQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGSERHGRRDNDRPRKKGRVAIDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGRAP--TDAETAGPRQ 1194
            A   LP GW +  H ++ Q +YV +ATG+R +  P                  XXXXXXXXXXXXXX                  +K+ +  IDPLDP G +GG++SDGL   GERMADSTASGPLWQQRPYPAPG +L+ R P   +  + GP++
Sbjct:  197 APVALPPGWSSRVHPSSNQVYYVKDATGERRWEPPTHANDAGDGATRRPEGPKXXXXXXXXXXXXXX------------------KKRDKSQIDPLDPLGLSGGRYSDGLHHKGERMADSTASGPLWQQRPYPAPGSVLKMRGPGVREGSSIGPQR 334
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: A0A662WZ89_9STRA (WW domain-containing protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WZ89_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 7.990e-13
Identity = 37/51 (72.55%), Postives = 43/51 (84.31%), Query Frame = 1 
Query: 1009 IDPLDPTGKTGGKWSDGLVQVGERMADSTASGPLWQQRPYPAPGKILRGRA 1161
            IDP+DPTG+ GGKWSDGLV   ER ADST +GPL+QQRPYPAPG++LR  A
Sbjct:  288 IDPMDPTGR-GGKWSDGLVDPSERAADSTVTGPLYQQRPYPAPGQVLRKEA 337
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: A7SWW0_NEMVE (Predicted protein (Fragment) n=3 Tax=Nematostella vectensis TaxID=45351 RepID=A7SWW0_NEMVE)

HSP 1 Score: 72.8 bits (177), Expect = 1.120e-10
Identity = 56/193 (29.02%), Postives = 82/193 (42.49%), Query Frame = 1 
Query:  589 PLPAGWKEIKDPKGGAVYFWNQSTRATTWVRPTGPPASXXXXXXXXXXATAGLPEGWKAVTHAATGQTHYVHEATGQRSFSLPGSQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGSERHGRRDNDRPRKKGRVAIDPLDPTGKTG---GKWSDGLVQVGERMA--DSTASGPLWQQRPYPAPGKILR 1152
            PLP  W  I DP GG  Y+WN ST   +W+ P  P A               +    +  T  ++  +  +  + G+    + GSQ +Q                                S+R  + ++ R +     A+DP+DP+  +    G WS GL Q G+     D TA+GPL+QQRPYP+PG ILR
Sbjct:   75 PLPPNWYFIPDPAGGRHYYWNTSTNQVSWLHPMDPAAEITLPASVLNKTNNDIAPNREIPTPLSSQDSGGL--SIGRHPSLMKGSQKRQEAAVKRKL------------------------SDREQKLESKRGKSD---AVDPMDPSSYSDAPRGDWSSGLHQKGDAKTGVDVTANGPLFQQRPYPSPGAILR 238
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: UPI00077AF80D (polyglutamine-binding protein 1-like n=2 Tax=Acropora TaxID=6127 RepID=UPI00077AF80D)

HSP 1 Score: 72.8 bits (177), Expect = 1.310e-10
Identity = 56/196 (28.57%), Postives = 79/196 (40.31%), Query Frame = 1 
Query:  589 PLPAGWKEIKDPKGGAVYFWNQSTRATTWVRPTGPPASXXXXXXXXXXATAGLPEGWKAVTHAATGQTHYVHE---ATGQRSFSLPGSQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGSERHGRRDNDRPRKKGRVAIDPLDPTGKTG---GKWSDGLVQVGERMA--DSTASGPLWQQRPYPAPGKILR 1152
            PLP GW  + DP  G+ YFWN  T   +W+ P  P A                 +  + +       T    E   + G+    + GSQ +Q                             A G  +H +      RKK    IDP+DP   +    G W+ GL++ GE     D+TA+GPL+Q RPYP+PG +LR
Sbjct:   71 PLPIGWYLVPDPSSGSSYFWNTVTNQVSWLHPLDPAAEITLSASAASNQKESDVQPNREILSPPGVDTENDKEQVLSIGKHPSLVKGSQKRQE----------------------------AAGKRKHEKEIRAEKRKKSEE-IDPMDPASYSDAPKGTWTTGLIKKGEAKTGVDTTANGPLFQMRPYPSPGAVLR 237
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: A0A8J2MQ42_COTCN (Similar to PQBP1: Polyglutamine-binding protein 1 (Bos taurus) n=3 Tax=Cotesia TaxID=32390 RepID=A0A8J2MQ42_COTCN)

HSP 1 Score: 73.2 bits (178), Expect = 1.700e-10
Identity = 58/203 (28.57%), Postives = 84/203 (41.38%), Query Frame = 1 
Query:  589 PLPAGWKEIKDPKGGAVYFWNQSTRATTWVRPTGPPASXXXXXXXXXXATAGLPEGWKAVTHAATGQTHYVHEATGQRSFSLPGSQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGSERHGRRDNDR--PRKKGRVAIDPLDPTGKTG---GKWSDGLVQVGERM--ADSTASGPLWQQRPYPAPGKILRGRAPTDAE 1176
            PLP  WK + DP  G  Y+W++S+   +W  P  P               + L E  +    AA    +   E +G    ++   +P+                                  +R+  R +DR  P+ K    +DP+DP   +    GKWSDGL +  E    AD+TASGPL+Q RPYP+PG +LR   P   E
Sbjct:  108 PLPETWKAVYDPGVGQHYYWDRSSDLVSWYPPAHPKCQISQP-------ASQLRE--ELHLKAADQDDNMSSEDSGSEQETMDVDEPRSKKDHRPSTR------------------------DRYRSRSHDRRGPKDKRERPLDPMDPASYSDIPRGKWSDGLARYNEAKTGADTTASGPLYQMRPYPSPGAVLRSNKPPKPE 277
[Close]
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Match: A0A0R3T8I1_RODNA (WW domain-containing protein n=1 Tax=Rodentolepis nana TaxID=102285 RepID=A0A0R3T8I1_RODNA)

HSP 1 Score: 72.8 bits (177), Expect = 2.830e-10
Identity = 73/198 (36.87%), Postives = 91/198 (45.96%), Query Frame = 1 
Query:  589 PLPAGWKEIKDPKGGAVYFWNQSTRATTWVRPTGPPASXXXXXXXXXXATAGLPEGWKAVTHAATGQ--THYVHEATGQRSFSLPGSQPQQXXXXXXXXXXXXXXXXXXXXXXXXXXXXAARGSERHGRRDNDRPRKKGRVAIDPLDPTGKTG---GKWSDGL--VQVGERMADSTASGPLWQQRPYPAPGKILRGRA 1161
            PLPA W E+ DP  G  Y+WN  T   +W+ PT P A                      ++ A  G      V    G+R+       P               XXXXXXXXXXXXXXX      R G  D+D         +DP+DP   +    G W+DGL  V   +  AD+TASGPL+QQRPYP+PG+ILR  A
Sbjct:  119 PLPANWIEVGDPVSGRFYYWNMMTDDVSWLSPTHPRAVITKSASILKVQMLAAKTAAANISAAILGTPGASEVESEEGERNERDRSKSPTSTSRPPLLSSIMAPXXXXXXXXXXXXXXXXXFDKRRRG--DDD--------PLDPMDPASYSDVPRGGWTDGLEGVDSAKTGADTTASGPLFQQRPYPSPGEILRANA 306
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig206.23.7 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXC0_ECTSI3.100e-13869.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L5A1_9PHAE9.760e-9563.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A7S2W7K5_9STRA5.830e-3231.98Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
W7THS9_9STRA1.150e-2134.06Ubiquitin-protein ligase n=3 Tax=Monodopsidaceae T... [more]
A0A8J2X3M8_9STRA5.780e-1844.87Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A662WZ89_9STRA7.990e-1372.55WW domain-containing protein n=1 Tax=Nothophytopht... [more]
A7SWW0_NEMVE1.120e-1029.02Predicted protein (Fragment) n=3 Tax=Nematostella ... [more]
UPI00077AF80D1.310e-1028.57polyglutamine-binding protein 1-like n=2 Tax=Acrop... [more]
A0A8J2MQ42_COTCN1.700e-1028.57Similar to PQBP1: Polyglutamine-binding protein 1 ... [more]
A0A0R3T8I1_RODNA2.830e-1036.87WW domain-containing protein n=1 Tax=Rodentolepis ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig206contigP-littoralis_Contig206:284094..299687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXC0
Preferred namePQBP1
PFAMsWW
Model size1873
Max annot lvl2759|Eukaryota
KEGG rclassRC00004,RC00069,RC00840,RC00948,RC01704,RC01705,RC01706,RC01758,RC01759,RC01765,RC01767,RC01769,RC02243,RC02527,RC02939,RC02940,RC02942,RC02943,RC02944
KEGG koko:K00799,ko:K12865
KEGG TC1.A.12.2.2,1.A.12.3.2
KEGG ReactionR03522,R07002,R07003,R07004,R07023,R07024,R07025,R07026,R07069,R07070,R07083,R07084,R07091,R07092,R07093,R07094,R07100,R07113,R07116,R08280,R09409,R11905
KEGG Pathwayko00480,ko00980,ko00982,ko00983,ko01524,ko03040,ko05200,ko05204,ko05225,ko05418,map00480,map00980,map00982,map00983,map01524,map03040,map05200,map05204,map05225,map05418
KEGG ModuleM00353
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000380,GO:0000398,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0001817,GO:0001819,GO:0002218,GO:0002230,GO:0002252,GO:0002253,GO:0002376,GO:0002682,GO:0002684,GO:0002697,GO:0002831,GO:0003008,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003712,GO:0003713,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005783,GO:0005791,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006139,GO:0006355,GO:0006396,GO:0006397,GO:0006417,GO:0006629,GO:0006638,GO:0006639,GO:0006641,GO:0006725,GO:0006807,GO:0006950,GO:0006952,GO:0006996,GO:0007275,GO:0007399,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007635,GO:0008022,GO:0008150,GO:0008152,GO:0008306,GO:0008355,GO:0008380,GO:0009605,GO:0009607,GO:0009615,GO:0009653,GO:0009887,GO:0009889,GO:0009891,GO:0009893,GO:0009987,GO:0010033,GO:0010467,GO:0010468,GO:0010494,GO:0010556,GO:0010557,GO:0010604,GO:0010608,GO:0010628,GO:0010638,GO:0010769,GO:0010975,GO:0012505,GO:0014070,GO:0015630,GO:0016043,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022008,GO:0022603,GO:0022604,GO:0030030,GO:0030154,GO:0030182,GO:0031175,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031344,GO:0031346,GO:0031347,GO:0031349,GO:0031974,GO:0031981,GO:0032101,GO:0032268,GO:0032270,GO:0032479,GO:0032481,GO:0032501,GO:0032502,GO:0032528,GO:0032838,GO:0032991,GO:0033043,GO:0034248,GO:0034250,GO:0034641,GO:0035770,GO:0036464,GO:0042048,GO:0042051,GO:0042052,GO:0042221,GO:0042461,GO:0042462,GO:0042995,GO:0043005,GO:0043021,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043330,GO:0043331,GO:0043484,GO:0043900,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044255,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044451,GO:0044463,GO:0044464,GO:0044877,GO:0045088,GO:0045089,GO:0045595,GO:0045664,GO:0045724,GO:0045727,GO:0045935,GO:0046483,GO:0046486,GO:0046530,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048592,GO:0048666,GO:0048699,GO:0048731,GO:0048749,GO:0048814,GO:0048856,GO:0048869,GO:0050688,GO:0050691,GO:0050767,GO:0050773,GO:0050776,GO:0050778,GO:0050789,GO:0050793,GO:0050794,GO:0050877,GO:0050890,GO:0050896,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051239,GO:0051240,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051607,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0060255,GO:0060284,GO:0060491,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071359,GO:0071360,GO:0071407,GO:0071598,GO:0071704,GO:0071840,GO:0080090,GO:0080134,GO:0090304,GO:0090596,GO:0097159,GO:0097458,GO:0097546,GO:0098542,GO:0099568,GO:0120025,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120111,GO:0140110,GO:1901360,GO:1901363,GO:1901698,GO:1901699,GO:1902017,GO:1902115,GO:1902117,GO:1902680,GO:1902855,GO:1902857,GO:1903506,GO:1903508,GO:1990904,GO:2000026,GO:2000112,GO:2001141
Exons8
Evalue5.97e-142
EggNOG OGsKOG3427@1|root,KOG3427@2759|Eukaryota
Ec32 ortholog descriptionWW domain
Ec32 orthologEc-04_000040.1
EC2.5.1.18
Descriptioncellular response to exogenous dsRNA
Cds size1188
COG categoryA
BRITEko00000,ko00001,ko00002,ko01000,ko02000,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig206.23.7prot_P-littoralis_Contig206.23.7Pylaiella littoralis U1_48polypeptideP-littoralis_Contig206 284106..299014 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790004.6551156-UTR-P-littoralis_Contig206:284093..2841051680790004.6551156-UTR-P-littoralis_Contig206:284093..284105Pylaiella littoralis U1_48UTRP-littoralis_Contig206 284094..284105 +
1680790004.7568896-UTR-P-littoralis_Contig206:299014..2996871680790004.7568896-UTR-P-littoralis_Contig206:299014..299687Pylaiella littoralis U1_48UTRP-littoralis_Contig206 299015..299687 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790004.670814-CDS-P-littoralis_Contig206:284105..2841721680790004.670814-CDS-P-littoralis_Contig206:284105..284172Pylaiella littoralis U1_48CDSP-littoralis_Contig206 284106..284172 +
1680790004.6830747-CDS-P-littoralis_Contig206:286665..2867751680790004.6830747-CDS-P-littoralis_Contig206:286665..286775Pylaiella littoralis U1_48CDSP-littoralis_Contig206 286666..286775 +
1680790004.6933513-CDS-P-littoralis_Contig206:288943..2891771680790004.6933513-CDS-P-littoralis_Contig206:288943..289177Pylaiella littoralis U1_48CDSP-littoralis_Contig206 288944..289177 +
1680790004.7088785-CDS-P-littoralis_Contig206:290616..2908471680790004.7088785-CDS-P-littoralis_Contig206:290616..290847Pylaiella littoralis U1_48CDSP-littoralis_Contig206 290617..290847 +
1680790004.7189112-CDS-P-littoralis_Contig206:293565..2936951680790004.7189112-CDS-P-littoralis_Contig206:293565..293695Pylaiella littoralis U1_48CDSP-littoralis_Contig206 293566..293695 +
1680790004.7279732-CDS-P-littoralis_Contig206:295471..2956401680790004.7279732-CDS-P-littoralis_Contig206:295471..295640Pylaiella littoralis U1_48CDSP-littoralis_Contig206 295472..295640 +
1680790004.7364907-CDS-P-littoralis_Contig206:296859..2969741680790004.7364907-CDS-P-littoralis_Contig206:296859..296974Pylaiella littoralis U1_48CDSP-littoralis_Contig206 296860..296974 +
1680790004.7479167-CDS-P-littoralis_Contig206:298882..2990141680790004.7479167-CDS-P-littoralis_Contig206:298882..299014Pylaiella littoralis U1_48CDSP-littoralis_Contig206 298883..299014 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig206.23.7

>prot_P-littoralis_Contig206.23.7 ID=prot_P-littoralis_Contig206.23.7|Name=mRNA_P-littoralis_Contig206.23.7|organism=Pylaiella littoralis U1_48|type=polypeptide|length=396bp
MPRLADPARLQKEIDAQKKRAEALALLNSSGGEQHFKPGEVRKAREGKQS
DNTLEVVTLRRAQQSYQELSAKERLLRQQNSVREGVEKKQSAARGAGGGS
SSSSGSSSSSVGSGGNLREGWKEIKDAKTGSTYYWNKESNATSWERPVNP
PGGVSKANDNLAGSGSPGGVGDGVGGAAARKIGEGGGGTPLPPLPAGWKE
IKDPKGGAVYFWNQSTRATTWVRPTGPPASGGGGGSASAAATAGLPEGWK
AVTHAATGQTHYVHEATGQRSFSLPGSQPQQQPQKQQQPGAASSSERKQG
GGGGQGGASAARGSERHGRRDNDRPRKKGRVAIDPLDPTGKTGGKWSDGL
VQVGERMADSTASGPLWQQRPYPAPGKILRGRAPTDAETAGPRQR*
back to top

mRNA from alignment at P-littoralis_Contig206:284094..299687+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig206.23.7 ID=mRNA_P-littoralis_Contig206.23.7|Name=mRNA_P-littoralis_Contig206.23.7|organism=Pylaiella littoralis U1_48|type=mRNA|length=15594bp|location=Sequence derived from alignment at P-littoralis_Contig206:284094..299687+ (Pylaiella littoralis U1_48)
CAACGACCCAGGATGCCGAGGCTTGCTGATCCCGCGAGGCTTCAGAAGGA
GATTGACGCTCAGAAGAAACGGGCAGAAGGTAAGATGAGTGCTACAACCA
GATCGAGTCGAGGGATAGCCAGAAGGCAGTGAAGTTCTGCTTCGTGTTTT
GTGTCTCGTGTCACTGCTGCTCTCGACTACCAACTGCTGGTACACCGCAA
TGCAGCACCGCAGTAGTGGTTCACGCGATTCTTCAAAGCTCGGCACAGCA
GTGATAGTCATCCCCATCTTGAAAAGGAAGAGGGTAGCGTGGCGTAAAAA
GACATGTCGTCGTTTGGTGACAGTACTACGTACGAGTACTGTGCAAGACA
CTAAAACACAACAAAAAGCAAATCGAAAGTTGAATGTGGCAGAGGGGTCC
CGTGAAACAGGTACGCACCCCTTCAAAAGGTAAGCGCATGTCTCCCGCCT
GCATACCAAACACACCAGCCGCATCCTTCTGTGTTTCTCCTTATCTCCAG
ATACCTGATATCGACGCTCGTATAGCGGGACTGCAGTACACAGTAGTGCA
GTAGTGAACGTGTGAGCGGTATTCATGTACCGGTACAACAACATTGTAAG
GTAAGTTTTTAATTACGCCGCATTTTTTCCTCCAGTCCGCACTCATCTTT
TTTGATTTACAGAAAGACAGTGAGAAATACTGCTGTTTGTTTGTACTTGG
TAGTATTTACGAAGTATCAGACGCCGTCGCCCCGGTGGTTCAGGTGGTAA
TCCACGTAACCTTCTGACATTCACGCGTGAGTTTGAATCCCTGTGCAGTA
ACACGATCTGGGTTTTCTTCTCACAAAGCACGTGAAAGAGGAAAGCGATT
AATTCGTGAATAAACAAAATTCGATCGTACCATCGACGAGGGAAAGGGAT
CGCTGTCCCCTTTCTCGCGATAAAAGCTCAACCAAAACAAGGCAAGCACC
GCAGAGGGAAGTGGAGAAAAAAAAAAAACTCCTGTCTTGACTTCCCCCTG
TGTAACCCCAGTTGGAGCGTCGACCTACCCGAAAAGTGCAGAGTGGCGTT
CAATGAAAGGGATGACAACACACATACGAAGTACTTCGAAGTACGGAGTA
TAAAATAGTACAGCAGCATGCAATCGAGCCCGTTTTTGGGTTACGTACAG
ATCTCATCTTGACTGCTGTGTTTGTTTCGGCGGTGAGAGTCCAGCCAAAT
CACTCCGCATTTGCTGTTTGCTGTGTTGAATTGCACAGAAATTGTGTCTA
AACCCTCTTCCGTGCACTAACGATCCTACGCAACGATGAATGTGGTACTT
ATTTCGTGTATTTAGAGGTGTGGTGTTGGCTGGCCTTTGTATCCGCCAAG
TTTTTACAGTAAGTGATTTCATTCTTGTTGACGTATTTTTTTTTCCATCT
ATGTATGATACTGCACTGCACTACTTCTACAAACTAATACTTTGTATCAT
GTCCAAGTACTTCGGACTCGGTCGCCTTCGACGTCTCTCGCTCGCCCACG
CGTCCCATATGATATAATCTCCGATACAATCTCTGATAGAATCTCCGATG
GAATATCCGGTAGAATCTCCGATACAATCTCCGCACTTACCCTGAGGCCT
TGAGGCTGGATCTTGTGGCCCCCGGATGATGGGCCCCTGATCTCAAATCT
CGTCGGACAAGTATCGGTGGGCAAACACGGATTTGGGGCCCCGGATAACG
ACCCCGGTTTTTTAGGAGTGTCCTCAACAGGGACATGTTGGGTGGGTTCC
ATATACATACAACGTTACAACGGACGCACGTGCGTTATAGTGTGCAGCAG
AGCAGGCCGCACCATCACTCAATCAGCAAAGAAAAAACCACACACACCAG
AAGAGCGACGAGCTCCGCATATCGTTCGCTGCCTCATACTACGTACGCGC
TCGAACCAGGCCCCGTCGAGGGTCGGGTGGGGTTTTGGTTTGTGGTTGCA
GTGCGCTCGGAGATGTGGTGTGGCCCTCGTACGATAGAGCAGCAAAACCT
CGAAGCCGTGAGCAATAATCTGCGGCTGTCTCGCCACGGCTTTTGGGCCC
AAAATCCGCAGGAATCGCCCCCGGAGTGTTGTCCCCGGATATTTTGGGCT
CCGGAATCTCAAATTCCGCACGATATAAGGTGGTCCGAAGATAATTTCCT
ACGGATGTTGAAGATCCGAGGCCCAAATACGGGGCCCATAAGATCCCGCC
TGAGGGTGGGCCCTGCTGCGATGGGCTTACACGCTCAGGTTGGCGAGGGC
GATATAACCGGGTTTCATATAACGCGATTTCAACCAATTCCATTGAATTG
CCGAGCGTCTGTTGCTGCTCAATAAATACTGTATGTATGTACGTTCGAAA
GTCAACGACGGTTGAACGAATCGCCATCAAGCCCTCCAGCGTACCTATTC
TGTGGAGCACATTAGTCTACATTACTTAGTGCTACGGTATGTCATACCTC
GAAGTATGTATGAAGCACACAAGACTACCCTAAAGATCCTGTGTGTGTTG
TGTGTTGTGTGTGTGTTGTGTTGTGTGTGCGTGTGCGTGTGTGCGTGTGT
GCGTTTTTTCGTTGTCTCTCAGCGCTGGCTCTGTTGAACAGCTCGGGCGG
AGAGCAGCACTTCAAGCCCGGCGAGGTCCGGAAAGCCAGAGAAGGCAAGC
AGAGCGACAACACCCTCGAGGTCGTCACCCTTGTGAGTTTGCCTGTATAA
TGAAAAGAGGCGTTTGTGTGAAAATTACATGAGGCGCTTGGTGGAAATCG
ACAAGATGCGTTTGTGTGTACAACGAAAAGAGGCGTTTGCATAAAAATGA
CAAAAGGCGTTTATGTGTCTAGCGAACAGAGGCGCTTGTGTGAAAACGAC
AAGAGGCGTTTGGGTGTTTTTGACTTTGTGTGTGCGTGCGCATTTTTTCG
TCCTTTCTATTCTGGGCACCAACCATTCTACGCCTTCCGGTATGTGGGTG
CACTAGCCAGCCGGGGGCCACACAGAAGAAGGAAGGTCGCACACAGGAGT
TTTTTTTTATTTGCACCGGTGTGGATGACGGCTGTAGTGACATCACAACC
ATGGTATCGTAGGCACAATCAAGAAGGTAGGAAGAACCGAAGCCTCTCGG
AACATTAGGACCGAGGTCCGTTGACCACCTGACGATCCGACGGATATCTG
CTTCTTCCCTGCTGGTAAGCAACAGGCCGGACCTCCGGTCACCCCGTTGC
CACTCTATCATACATTTTGGACCCTTCTTGCTATATCTACGGAAGTGGAT
GCACCAGCCAGCCGGAGCCGGTCACACAGAAGAAGGAAGACCACACAGGA
GTTTATTTTTCGGGTAAACGCCAAAAAGCGGTATACCGCCTGGTGTCCGC
GCCACAAAAGCGGTACACCAAATTACACCTGGGCATCTGCCTCCCTTTCG
CGTCGCTGATTGGCCAATTTAGCCCCATGCTTTTTGGCACAAGCAGCCGG
CAGTATGTCACATCTAGGCTTATCAGGTTGGCCTTCACCGTTTTTTGGCG
CAACCCACACCACTTTTTGGTGGGATATTTCCCAGGCCATTCGCCCAACA
ACCTTCCTCACTTCCAAATCACACATCAACCAAGGAAGCCACGTCACGTC
TGCACGTCGTACCCCCTCGACTGCCCCTGCGGGGTGGTGGTGCTCTGCTG
TGCGTGCATCAGATATAGACCAAAACCACGGCGAATAACGGGGGACTTCT
GTCAAGCCGTGAATGTGATGTACAGTAGAAGTGGTACCTCCGTGTTCGGG
TAATACTCTGCGTTTGCGCGCTGCTTCTACACTGCTGTCATGGCTTGTAC
GTGGGCATTATCAGGCAGCTTGGCTCGGAGTGCACTGCTTTTGCTGTAGT
CAGGTTGCAGCTATATAAGGCCCATCATGAAGGTAGGTTTGATGTGTTGC
ACCCGAGTGACACGTCTCCGGTGCGGTGGTGATCGCGTACGCCGCCGTGG
ACACGTGTGCTGTGTGGTGCTTTGCGTGTCTGGTGGTGCATCATACTCGT
TTTCTGTGATCGCCTTGGTCTTTTGTCACACACAGCAGGGCACCATCCTG
CAGGGGTCGGTGGGGGTACGACTTGACGACTTGACCTGACTCCCTTGGTT
GATCGGTTGTGACGTGTGATGCCGAGATATCAAGGGCTGTTGGGCGAATG
GCCTGGGGAATATCCCGCCAAAAAACGGCGAAGGCCAACCTGAGAAGCCC
AGATGTGATTGATTACCGCCGGCTGCTGGTGCCTAAAAGCAGTACGAGGC
GTAATCGGCCAATCAGCGACGCGAATGAGGCTCAAATGCCAATGTCTGAT
TTGGTGTACCGCTTTGTGGCGCGGAAACCAGGCGGTATACCGCTTTTTGG
TGTTTGCCCTTGAAACTGTGTTTTATACCACCCAAAACATAAATTCCAAG
TAGTTCCCGCCCACACTACCTCTCATGCTACCGCTGTAACGACAACAATA
CCTCATATTGATACTATGTTTTTTTTCACCCAAACACTAATTCCAAGTAG
TTTCCCGCCCACACTACCTCTCATGCTACTGCTGCAACGATAGGAAAACC
TCACATTGAAACTATGTTTTTTATCACCCAGATACTAATTCCAAGTAGTT
TCCCGCCCACACTACCTCTCATGCTACTGCTGTAACGACAACAAAAACTC
ACATTGGAACTATGTACCATATCATACCACCCCATGTGACCCGTCAGAGG
AGGTAGACTGGCCAATCTAAATCCAAGTGTTTTCGCCCCCCTACTCTAAT
TCCAAGTAGTTCCACGCCCGCACCACTATCATGCCATCATGCTGTAACGA
CAACAAAACCTCACATCGAAACTATTTATCCACCCCATGCGTCCCTTCAG
AGAAGGGCGCAGCAGAGCTACCAGGAGCTTAGCGCCAAGGAACGTCTACT
GCGGCAGCAGAACAGCGTCAGGGAGGGGGTCGAGAAGAAGCAGAGCGCTG
CGAGAGGGGCTGGCGGCGGCAGCAGCAGCAGCAGCGGCAGCAGCAGCAGC
AGCGTCGGGTCTGGCGGGAATCTCCGTGAAGGCTGGAAGGAAATCAAGGA
TGCCAAGACAGGCTCGACGTACTACTGGAACAAGGTACGTATACTTCCTT
CCTCTCTCTCTCCGTTGTTTTTTATTATTGCGGTTTTTTTATTGCTTCGA
AAGTATTTTGTTGATATGACTTTGTAATACTTTCGTTCTGTTCGACGTTT
GTTTGCTGATCTGGTTCCGGTTACCCCAACTGTGTGATGGAAGACTTCTT
GTCGCATAGGGGCGAGTCATGTAACCCTACCCCTAACCCTAACCCTAACC
CTATAGAAGACTTCTTGGCGTGAATACTTGCACATGGAAAAGGCGAGGGG
CGAGTCATGTAACCCTAACCCTAACCCTAACCCTAACCCTATAGAAGACT
TCTTGGCGTGAATACTTGCACATGGAAAAGGCGGGGGGCGAGTCATGTAA
CCCTAACCTTCACCCTAACCCTAACCCTAACCCTAAAGGATACAGTGTGG
AGTCGAAACTATATAACATACAGTATGGGGGCACTATTCTACAGAACTAG
GATTTAGTATGGGATCAGAAGTGTATGGGATATAGTTATAAACTTCAGAG
GGTGAAATTTAGAGTCGACGTACCGCTGTCTAAGACAGATCCCTCTTGAC
ACATTCTTCGGAGAAACCGCCGTCTGTCTAAGACAGATCCCTCTTGACAC
ATTCTTCAGAGAACCGCTGTCTGTCTAAGACAGATCCCTCTAGGCATACA
GAAGACATATCCTCATGTATCTGTTACGAAGTATCATGCTGTTGTTGTAC
GAAGTACCATGTGTTTATCGTTATCATTGTTATTTCTGTTTGTTTGTTTG
TTTGTTTGTTTTTTTCATCGCCTTCGTTTTTTTTTTATTTATTCATGAAC
CCTGTGTTTTGTTCTGTCTTGGTTTGTGGCGGTTTGTTTTGTTTCCAAAT
TGTTTTTGTGAGTCTGTATTTCTGTATTCCGCGTACTTCGGCCATCACAG
AAGGCATCCCACCGGCCGGCACTATGGCCGGCTTTTTTATTTGGGTTTCG
TTTTTGTTTTGTCTCTTTTCCTGTGGGTATCGCATCACACACACGCCTCT
TTTCTTTTTCGTTGTCTCTTTTCCTGTGGGTATCGCATCGCACACACGCC
TCTTTTCATTTTCGTTGTCTCTTTGCCTGTGGGTAAATTATCGCATCACA
CACACGCGTCTATCCATATTCTCGTGCGTAGCCAACACATAAATAAAAAA
ATATACGGAGTATATACGATGAGAACAAACAGGAGTCAGAGACCCGTCAA
TCCCTCGCACACGCCTCTTTTCATTCTCTCGTTGCTTTTCCTGCGCGTTT
CGCATGCCAACAATCAAATTAAAAAAAACGATGACAACAAACAGGAGTCG
AACGCAACTTCTTGGGAACGACCCGTCAATCCCTCCCACACGCCTCTCTT
CATTCTCTCGTTGCTCTTCCTGCGCGTTTCGCATGCCAACAATCAAATTA
AAAAAAACGATGATATCAAACAGGAGTCGAACGCAACTTCTTGGGAACGA
CCGGTCAATCCCCCCGGCGGGGTTTCCAAAGCCAACGACAACCTAGCCGG
GAGCGGGAGTCCGGGGGGAGTTGGTGATGGGGTCGGGGGCGCCGCGGCAA
GAAAAATCGGAGAAGGAGGTGGGGGTACCCCCCTTCCTCCTCTGCCTGCC
GGATGGAAGGAAATCAAGGATCCGAAGGGTGGGGCGGTGTACTTCTGGAA
CCAGGTGTGATGTTGTATATTGTATGTTGGATGAGGATAAACTCTAACTA
TCCCTGAGTACGTTGGTTTCATTTAATTCGAGGTGAACGTGTGTATGGTG
GTGTCTCATTTTATTGAGTGAGTGAATGAGTGAAGGTCTCGTTTTTTATA
GAAGTTGTTGAAAAGCATTTTCATTTTGTTGAGTCCATGCGCGGTGGTGG
TAGATTTAGATTCGTACGAAATATAGGCTTTGGAAACCCCAAAAAATCAG
GCGTTTGTAGAAAGAGCGCAAACCAGGTGTGGTGTTGATGTTGATGTTGG
ATAGTGGATAGTGGATAGTGGATAATGGATAAAGATGACTCTATTCTTGA
TCCTTAAGTCTGATTGGTTTCATTTCAATTGAGTTTGTTGATGTTGATTC
TTCACATTTAGCTAACCACCATGGTCTAGCCCGTGGGTACAAAAAGTGCC
GAGCCCTAGGAAGATCCGAAAAACACACAACAAGTAAAAGAAGGGTAAGG
ATAACTCTAGCCCTCACCCTTATGTTGGTTTCATGTAATTCGAGGGAGAG
TGTGTATGGAGGTGTCAATGAATAGTCACCTCGTTTCGCTTAGGGTTAGG
GTTATCCACATTAATGCGTGGCTGTCTCATTTTATTGAGTCATTGAAAAG
CGGTTCCATTTCGTTGAGTTGATTCAAAGCAACTTCGTTTTGTTGAGTCC
ATTTCGTTGAAGTTTGTTTACGTGTGTGTGTTTTATTCACACTCAAAACC
GTTCCGATCTCTGCTCAGTACCTTATAATGTCCATGCCGTACTGCTCACT
CATCCGATAGAGGACTATTTCCTTTCGTGGTCACAGGCTATCATACATAC
CCAGAAAAGGGTACATGGTACCTTCTAATGTCCGTGCTAATGTCCGTGCT
GCTGACTCATCCGATAGGAGACTATTTCCTTCCGTGGTCACAGGCTACCC
ACCCAAAAAATGGCATACTGCTGTACGCAGAGAAATCCAGTACTGCTGTA
CGTACATCCACGCATGTACACGCTCGGAGTATTAGAGCAAGCTTGTATGG
GTTAGGGTTAGGGTTAGGGTTAGAGCAAGCTTGTATGATGTGGCCCTCTG
TTGCTTTGGTTTGTGGCCTTCCTTTGTTCCCGTTTGACATTTCAAATGCT
CCTCCTCGCATGAACAATATGTGCCTGGTTGGTCACCACGGGCTATGATA
CGTAAAACAACATGTTGCGGTGAGCTACGTATGATACAACGCGTATTTTG
GCATAATCAATCAACAAGAACAAGAGCCCAGTGAATCCAACAGGTGACGC
TCGAAAGCCCGAACACCGAACACACAGCAAACAATTTGCTTTCACGTCAA
GCGTCAAGCACCCCCCCCCCCCCCAAACCCTTCTGTGGATGCAAATATGA
ATATGCTCTCCGCTGATAGGTGCAAGTATGAATGAACATCCACCTGGGTA
TGGCACGTCTCTCTCTATCGGTGCAGTAGCCCCTGTCTGCACCTGCCAGG
TGCACACTTTAGCTGCACCTGTCGTGACGCCTCAGGAACTATTTTATCCC
TGTTCTCCCACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
GGGGTAGAAAAAAAAAACGGGGATAAAATACTCGCGGTGGGACAGGTTTC
GACTGCTTGGAGTACCGTAGTTTTAGGATCACCCACAACACTCACATATG
ACATGCATACCGGTCCTAAGTCTTTCCGTTATACCGTAATCATGCGAGTC
ATCGCACCCCCGTGTTAGCTTTTTTGCATTCCGTATTGCTCCATAACCAG
GAGTGTGCGAACACCAAACGACCCGTCATACGAAAGCTCTCGACGAGATC
TTTCCAAAACTACCCTTTTCGGCAGTGGTACTCTCCTGGTTGTGGAGCAA
TACGGAATGCAAAAACGCTAACACGGGGGTGCGATGACTCGCATGATTAC
GTTATCCAAGCCGGTGTTCTTTTAACTAAAATATGTGGACACCGGCTGTA
GTGACATCACAACCATTGTATGCGCATGCAACAGGATAGGAAGATACGAA
TCCTCTCGGGATATCCCGGTCGAGTCCGGAGACCTCCTGATATCCCGGTG
GATCTTTGGCTCTTCCTTGACTCTTACTCTCGTTGCTAAATATCAACGAA
GGAAACCGTTGCCCTGCTCCGCCTACTGGACGTAGCCTAGGTTAACAAAT
AGCTGGTTGGTTTTGAAAACGAGCTCGAGGGATTTGATCCTTTTTTTTTT
CTGTTTTTTTTGCGACTCCATCTTTCGTCAGCCCTCATAGAAACGTCGGG
GTTATATTTATTTCATTTTTTCATGGTCCCATACTGCTGTTGTATCCATG
TGATATATTCCTATTTTTGACGAAGAGATGATGACCTTCAAAAAGGGTAC
ACGGCCTTCATGAAGGGTGTTAGACGCTCCCACGAGCGCCTGTTGACTAG
TACGAATGCGTATGTATGCATAGAGATGATGACCTTCAAAAAGGGTACAC
GGCCTTCGAAAAAGGGCGTTGGACGCTCCCACGAACGTCTGTGGAAGACA
GGTCTCTTTTTCGATGTGTGTGTGTGTTGTTGTTATTGTTGTTGTTGTTG
CTTCTCACGTTAGCTCGCCACCAGAGGCTAACCCGTGGTCACGTATGTCG
CAGGAGGGAAACAAATGACGGATCCCTTTTTTGTTATTTTTGGTGTACTG
CGGTATATGTCGTTGTGGCCAGAGCACGCGGGCCACCACCTGGGTCCGAC
CCACGGGCCCCCCGGCGAGCGGGGGGGGCGGGGGCTCCGCCAGCGCTGCT
GCGACGGCGGGGCTTCCCGAGGGCTGGAAGGCTGTAACGCACGCCGCAAC
CGGTGAGTTTTTTTTTTTGTTTTCGTGTGCGTTGTTTGCCACCAAGACGT
TTTTTTTTGTGGAAAAAGAGAACCCGGTGTATACAGTTTACAGTACCAGA
TGTAAGTCACTTCCCGTACGCTTGACAATGGACTGTTCTGGAAGGGTCAT
TTATGCTGAAAGTTGTGTCCACGAAAGGTCATTTATGCTCGAATCTATCC
TCATACGTGTCATTCATGCTCATTTTTTCAACCCTCCCCCCTCAGGCTTG
ACAGTTCAAGGGTAATTTTATGCTGAAAGTTGTGTTAACAGTGGTCATTT
ATGCTCAAATCTGTCCTCATACGTGTCATCCATGCTCATTTTTTCAAGCC
CCCCCTAGACTAATGCTTGACAGTGCAAGGATCATTTATGCTGAAAGTTG
TGTCAACAACGGTCAATTGCGTTCAATGGAACGGAGCTGCCAGCGGGACT
GCCTGTCTACGAGTCTTCAAATTTTTGACCGTATTCAGAATCAGAAACAT
TGGATTTGGGTTTGGATTCCGTGTTGGGTCCGATCTGCTGCAGCTTTCGT
TTGTCCAAAATCCAAAGCGGATGCATAAAAAAAAAAGCAGTCACAGACAG
ATAGTGTGTGATGTGAGCATGCCGTGTCTCGATTCCAAGACAAATGCGGG
AGCTGTCGTCCCTCAAACGAAGAGCACGATGGTGCCCCACGTCGCCCTGA
CTCAGGCGCGTTGGTAGTTCTTTGTTTGGGATCGATAACCGAAAAACTCA
GAGATGAGTAAGTACGTGTTGCACATCTGCCCTTTCTTGGAGGTAGCGGC
TGTGTCAGCTAAGCAAACAGCAGTTGAGCAAGAAACTTCCTGCACACTTC
TGCACACTTGAGTGCTACTCTCCGGATTCTGGTCGGAATTCGCTCAAACA
AAGTGATCTGTATTCTGCGTGATACCAGCTTCCTCCGGAGCTAGCGCATG
TGTACAGCCGGGGTCTACAAGTTGTGCTGTGATCAGCTAAGCAAACATAT
GTAGTGTGCACCATGTGCTCCCGGAATGCACAGCAAACACCTCTCTGTCT
CGTATTCTTGGTCTTTTCGTTTTTGAGCCGCGTTTTTGATCTATTGGCGG
GAAGGAAAGTTTTTTCTACTTTCTTCCCGTTTCGGAAGAAAATAAAACTG
AAATCCAAAACGTGGTGCAGGCGGATGGATTGTTGACCTATCAGTGACAT
ATTCTGAGTTTATTTTTTATTTTTTATTTTTGAATGAGCCCAAAACGCTT
CGGCAAGAGCCACCCTCACCGCTGTCGCACGAATACGCCGGGACCGTCAG
GGAGGCTGTCAGCGGGACTGTCAGCGGGACTGTCAGCGGGACTGCTCTTT
TTTTAAGTCTTCGTGCAACTATTTCCCTCTCGCCGCTGTCGCACGAATAC
GCCGGGACCGGCAGCGAGGCTGTCAGCGAGGCTGTCAGCGGGACTGTGAG
CGGGACTGTGAGCTGGGCTGTCGGCGAGATGTTCACTGCACAAATATCCC
TCATCTCACGGTCACACGAATCACGAATACAGCGGGACTGCCAGCGAGGC
TTTCAACAGGTCTTCATAGCTTCATAGCAGTTCACAGCAGTTCACACTAT
TTTCATCCCACTGCTGTCGCACGAACACAACAGAACAGCGCTGCCCGCGG
GACTGTCAACAGGCTTCACACTATTTTCATCCCACTGACTGTCGCACGAA
CACAACGCAAAACGGAACTACCCGCGGGACTGTCAGCGGGACTGTTTACA
AGACTTCGCACGTTTTGCTCCATCTCAGGCCAGACTCACTACGTTCATGA
GGCCACCGGTCAGCGCAGTTTTTCCCTGCCGGGCTCGCAGCCTCAGCAGC
AGCCTCAGAAGCAGCAGCAGCCGGGGGCGGCATCCTCTTCTGAGCGAAAA
CAGGGGGGTGGGGGTGGACAGGGCGGTGCATCGGCGGCCCGCGGCAGGTG
CGGTTCATCCCATTGATGCTGTTGGTGTTGTTGTTGTCAATTGTTGTTGT
TGTTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGTTGATA
GTCCACCTTGCCTTCCCTTTGTAATGGCGGGCTGCTATATACATGAATCC
AGTGTGCATCGTGGTTCAAGTTCATAAATGGAACCTACCCACGCTACAGT
ATCGTCGTCGTTGTCTTTTTTTGTTGTCTGCTGGTGGTGGCGGTCTGGGG
GGTAAGTGGCGGTGCTGTTGCTCCTCACAGGAGGGGTGGCTTGTTGCTGC
ACACCCCATACCCGCCTTCTTCTCTAAACTCGCGAAACAGTTGCGAAGGG
CACAACAGACGGGAGATCGACCGACACAAATCTGGGCCTTCTTCTCAAAA
CACGCGAACATCGTTTTTGCCGCGCAACGTTGTGAATTCAGCAGCTTACG
TCCTCTTCTCGAAACACAAAACACGCTTTACTCTCATTTCAGCACACCCG
TGTTAATTCGGCAGCTCATGTCCTCTTCTCAAAACACGCTACACTCTTGA
TTGCAACACAGCGGTGCTCACTCAACAAAACACGCGAAGGTCTTTTCGCA
GCGCAACGGCGTTCATTCCACCGCTGACGGCCATCTCCTCAAGCACGCGG
AGCTGTTTCTGCAGCACAACGTCGCGAATTCAACAGCTGGTAGTCCAACC
TCTCGTTGCAGCACAACGTTTTTAACTCAGCAGCTTGTGTCCTTCTCGAA
ACACGCGAACTCTCATAGTATCACATCGGTGTTCATTCAGCAGCTTATAT
CCTCTTCTCAAAACGCGCTAGACTCTTGATTGCACCACAACGGTGTGCAT
TCCACCGCTGACAGCCAGCCATCTCCTCAAACACGCGCAACTGTATTTGC
AGCACATCGATGACCCTCAACTTCGTAGTTTCTATTTTGTCATTTACTTC
GTACAATATTGGGTGTGATGTGTGCATACACCAAGAAAACGTTCGACAAC
TAACTTACGCTTCTCTTTTATTTCGAGACACGCGAGAGTATTTTTGCAGC
ACAACGATGACCCTTCCTTCGGAGTGTCCATATTTGTCATTTACATTATT
GGGTGTGATGTGCGCATGCACCAAGTAAACGTCAGACAACTGACTCATAC
TTCGACGTAAAGTATGATGTTTTCATTCCTGTTGTCATGTTTCCCTTCTT
TATGTCATATTTGCAGCGAGAGGCACGGCAGACGGGATAACGACCGCCCG
AGGAAGAAGGGCCGAGTTGCGATAGATCCGTTGGATCCAACGGGCAAGAC
GGGCGGGAAGTGGTCGGACGGGCTCGTGCAGGTATGTGTGATCGGAAAAA
CGAAAAAACGAAACAACACAACTTTCGTTCTCCTGTGCTCACAAACGAGG
GGTCCCGCGATAGGGGGGGGGTACCCCCTATTTCACCAATCTACACCAAA
GTCTACCAGGTAGTAGTTACTCGACCGAGTAGCTCCAAAATGTGCCCCCC
CTATCGCGGGATCCTTCAAACCAGACACACAACGTGCAGGTATGTAGGAA
TAAACATAACTTTTGCAACTCCTGTGTTGTTGATGGTCACACTAGCTCAC
TACCACCAAAGCCTAGCCCGTGCTCACAAACCAGGCACATAACGTGCCAG
GCATCATATGTAGGAATAAACATAACTTTACTGTGTTGTTGATTTTCACA
TCAGTTCACCACCAAAGCCTAGCCCGTGCTCACAAACGAGGGGTCCCGCG
ATAGGGGGGGGGGTACCCCCTATTTCACCAATCCAAACTAGACGGAAGGA
ATACATTATTCGAATATAAATTTTGGAACACCTGTGTGTGTATGTGCGTG
TGTTTTTTGTGTTCGTAGTCTTTGCACAGCAGTATCACAAACCGTGCCGA
CCTCTGCTCTGCACTTGCTGATGTCCGGATGTATTTTGCTGACTCGTCCG
GTAGGGGACGAGTGTGGTCGAAGTGGAAAGAGGCGTGTGTGTCGTTGTTG
TTGTTGTTGTTCTTGTTGGTGTGGTTGTTAGTTGTTGTTCTTGTTGGTGT
GGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTCTTGTTGTGT
TGTTGTGGTTGGTGTGGTTGTTGTTCTTGTTGTTGATGCTGTGGTTGTTG
TTGGCGTTCTTGTTGTTGAGTAATGGAAAGAGGCGTGGCTTTATTTGTCT
TCACATTAAAACGTTCCGATCTCTCCTCGGCACCTTCCAATGGAGATAGG
GGGCGCTTTCCGTGGTAGCAGGCTAACTGCCCAGAAAAGGGCACATGGTA
CCTTCTACTGTCCGTGCTGCAGACTCGCCCGATAGGGGGCGCTTTCCGTG
GTAGCAGGCTATGAAAACTACCCATAAAAGGGTACATGGTACCTTCTTAT
GTCCGTGCTGCAGACTCGCCCAATAGGGGACACTTTCCTCGGTCACAGCC
TATCATATCTACCCAGAAAAGGGTACATAGTACCTTCAAATGTCCGTCCG
TACTGCCGCCTCATCCGATAGGGGACGCTCCCCGCGGTCACAGGCTGTGA
TTGCCTACTCAAAAATGGTGGTAAACAGCAGTACGTGGAACATACTGCAA
CATTGCACGCCCAACAGCGTCTAGCCTACCACAAATCCAAACCCATTGAA
ATTTCAATTTAAATCTGCTGGTATGTCGTATCATGTGTATAATAGGGTGC
CAACGTCGCATGCGAGCTCTTTTACACCTGAAGTTGTTTTTTTCTTGTGA
CACGCTTGAGTTTGAATCCCGGTGCATTAACACGATCCGGGATTTTTCTC
ATGTCATGCGTGAGAGTGGAAAGCGATCAATTCGTGAGTGAACAAAGTTC
GAAGTGTCGACGAGGGAAAGGGATCGCTGTACCCTTTCTCGCGATTAAAG
CTCAACCAAAAAGGCAAGCACTGCAGTGGGAAGTGGAGAAAAAAAAAATC
CTGTTCTGATTTCCTACTGTGTGACCCCGGTTGGAGCGTCTACCTATCCG
AAAGAAAAAAAGGCTTCCTTTCAAGTTAAATGTTAATTAAAATCCGAGAG
GTGTAGAGTGGCGTCCAATCAAAGGGATGACAATACACACTGTACCCCCG
TCATTGTTTTCTGCTTATTTGTATTGTTCTCTGTTGACGTCAGCTCTTTT
CATCTGAAATCGTTCATCTTAGATGCCCCCCCCCCCCTTGTTTTTTTCTG
TTTTTGTGTTGTTTTGTTTTGTTCTCTCTTTGACGTAAGGTTGGGGAGCG
CATGGCCGACAGTACGGCGAGCGGCCCGCTATGGCAGCAGAGACCGTACC
CCGCGCCTGGGAAGATTTTGCGGGGCCGCGCTCCTACGGATGCGGAGACG
GCGGGACCAAGACAGCGATGACTACCGATTTCCTCTCTCTGCTTTTTGGC
TATGATCTTGTTTAATCTTCTTTAGAGAAAAAGATAAAAAAAAAACATCT
GAGACGGGGACTCCACCAATGGGATGTGTTGAGTTCTTGACAGAGAGGGT
TCCATTTTCTCTTTTCCTACTCGTAAATAATTTATACTGTCAGAAGGGGG
GGTTCCGCAACATCATCGACGCAGGGTGGTGTCTATAATAGATGGGAGAC
GACAAATGCATGAGCACACAGAGGGTGTCTGAAGGCGACGCGTCTGACTG
GTTTCTTGAGAGTCCAGAGCTCTGAGGAATGTCGATGGCGCTCGTTTCTA
CAGAAATCATCTATTGGTTGCGAGTAGAGTGTTACAAACGTCTAGCGGAA
TGCGTGTATTTGTCGATATGATGGGAGGATGATTTCCGGTATACGAAGGA
GGCGTTTCTGGTTCTGGTACATGAAGGAGGCATTTTTCGGTACATGAAGG
AGGCATTTCTGGTCTGGTACCTAGTGGAGGCGTTTCTGGTACATGAAGGA
GGTGTTTCTGGCTCTGGTACCTAAAGGAGGCGTTTTTTGATACATGAATG
AGGAGTTTTCTGGTACATGAAGAAGGCGTTCCTGGTACATGAAGGAGGCG
TTTCTGGTCAATTAAGGAGACGCTTTCTGGTACATGAAGGAAGC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig206:284094..299687+

>mRNA_P-littoralis_Contig206.23.7 ID=mRNA_P-littoralis_Contig206.23.7|Name=mRNA_P-littoralis_Contig206.23.7|organism=Pylaiella littoralis U1_48|type=CDS|length=1188bp|location=Sequence derived from alignment at P-littoralis_Contig206:284094..299687+ (Pylaiella littoralis U1_48)
ATGCCGAGGCTTGCTGATCCCGCGAGGCTTCAGAAGGAGATTGACGCTCA
GAAGAAACGGGCAGAAGCGCTGGCTCTGTTGAACAGCTCGGGCGGAGAGC
AGCACTTCAAGCCCGGCGAGGTCCGGAAAGCCAGAGAAGGCAAGCAGAGC
GACAACACCCTCGAGGTCGTCACCCTTAGAAGGGCGCAGCAGAGCTACCA
GGAGCTTAGCGCCAAGGAACGTCTACTGCGGCAGCAGAACAGCGTCAGGG
AGGGGGTCGAGAAGAAGCAGAGCGCTGCGAGAGGGGCTGGCGGCGGCAGC
AGCAGCAGCAGCGGCAGCAGCAGCAGCAGCGTCGGGTCTGGCGGGAATCT
CCGTGAAGGCTGGAAGGAAATCAAGGATGCCAAGACAGGCTCGACGTACT
ACTGGAACAAGGAGTCGAACGCAACTTCTTGGGAACGACCGGTCAATCCC
CCCGGCGGGGTTTCCAAAGCCAACGACAACCTAGCCGGGAGCGGGAGTCC
GGGGGGAGTTGGTGATGGGGTCGGGGGCGCCGCGGCAAGAAAAATCGGAG
AAGGAGGTGGGGGTACCCCCCTTCCTCCTCTGCCTGCCGGATGGAAGGAA
ATCAAGGATCCGAAGGGTGGGGCGGTGTACTTCTGGAACCAGAGCACGCG
GGCCACCACCTGGGTCCGACCCACGGGCCCCCCGGCGAGCGGGGGGGGCG
GGGGCTCCGCCAGCGCTGCTGCGACGGCGGGGCTTCCCGAGGGCTGGAAG
GCTGTAACGCACGCCGCAACCGGCCAGACTCACTACGTTCATGAGGCCAC
CGGTCAGCGCAGTTTTTCCCTGCCGGGCTCGCAGCCTCAGCAGCAGCCTC
AGAAGCAGCAGCAGCCGGGGGCGGCATCCTCTTCTGAGCGAAAACAGGGG
GGTGGGGGTGGACAGGGCGGTGCATCGGCGGCCCGCGGCAGCGAGAGGCA
CGGCAGACGGGATAACGACCGCCCGAGGAAGAAGGGCCGAGTTGCGATAG
ATCCGTTGGATCCAACGGGCAAGACGGGCGGGAAGTGGTCGGACGGGCTC
GTGCAGGTTGGGGAGCGCATGGCCGACAGTACGGCGAGCGGCCCGCTATG
GCAGCAGAGACCGTACCCCGCGCCTGGGAAGATTTTGCGGGGCCGCGCTC
CTACGGATGCGGAGACGGCGGGACCAAGACAGCGATGA
back to top