mRNA_P-littoralis_Contig206.10.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: A0A6H5JBE2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBE2_9PHAE) HSP 1 Score: 539 bits (1389), Expect = 4.620e-191 Identity = 256/260 (98.46%), Postives = 257/260 (98.85%), Query Frame = 1
Query: 1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDK YAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSE DLLFSKRLESVRKDVECF GILKMRFRILKLAMTYQKQERLDYVFFTCCIL+NMLHTHDGMGGLEED
Sbjct: 128 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKQYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSEADLLFSKRLESVRKDVECFFGILKMRFRILKLAMTYQKQERLDYVFFTCCILHNMLHTHDGMGGLEED 387
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: A0A6H5JHI0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI0_9PHAE) HSP 1 Score: 415 bits (1066), Expect = 6.330e-143 Identity = 194/260 (74.62%), Postives = 220/260 (84.62%), Query Frame = 1
Query: 1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
VLA LTILGRGN F SIY +SWMS TVQ +FH+FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHIGWS+CPYN RSYTGKEG PTVGYQVTVNHAGR +AVTEGFT STNDKT +C D V++IRTD Y EK F V+ +DGTT TLKGCYL+VDNGYHKW++L+EP+KYPLSE D+LFSKRLESVRKDVECF GILK FRI K+AM Y +QER+D VFFTCCIL+NMLHT DGM L E+
Sbjct: 99 VLAWLTILGRGNCFASIYQVSWMSAKTVQTMFHKFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIGWSKCPYNLARSYTGKEGVPTVGYQVTVNHAGRAIAVTEGFTDSTNDKTTVCWDAVVEKIRTDNQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWKILMEPTKYPLSENDILFSKRLESVRKDVECFFGILKGCFRIQKVAMAYHEQERIDNVFFTCCILHNMLHTFDGMDQLVEN 358
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: A0A6H5KNX4_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNX4_9PHAE) HSP 1 Score: 397 bits (1020), Expect = 3.070e-135 Identity = 197/288 (68.40%), Postives = 220/288 (76.39%), Query Frame = 1
Query: 1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYA----------------------------EKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
VLA LTILGRGN F SIY +SWMS TVQ +FH+FC HFA EMYDE I LP+EE+G+LD VM QY++LGF GA+GS DVTHI WSRCPYNQ RSYTGKEG PT+ YQVTV+HAGR +AVTEGFTGSTNDKTI+C D AV++I TDK Y EK F V+ +DGTT TLKGCYL+VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF GILK RFRILKLAM YQ QER+D VFFTC IL+NMLHT DGM L E+
Sbjct: 86 VLAWLTILGRGNCFASIYQMSWMSAKTVQGMFHKFCRHFAREMYDEQIHLPTEESGKLDHVMKQYDRLGFTGAVGSMDVTHIAWSRCPYNQARSYTGKEGFPTIAYQVTVDHAGRAIAVTEGFTGSTNDKTIVCWDTAVEKIWTDKHYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRFRILKLAMEYQSQERIDNVFFTCYILHNMLHTFDGMDQLVEN 373
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: A0A6H5JUX7_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUX7_9PHAE) HSP 1 Score: 365 bits (937), Expect = 3.040e-124 Identity = 179/260 (68.85%), Postives = 203/260 (78.08%), Query Frame = 1
Query: 1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
VLA LTILG+GN F SI+ +SWMS TVQ VFH+FC FA EMYDEHI LP+EE+G+L VM QY++LG CPYNQ RSYTGK+ PT+ YQVTV+HA R +AVTEGFTGSTNDKTI+C D AVD+IRTDK Y EK F ++ +DGTT TLKGCY + DNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF GILK RFRILKLAM YQ QER+D VFFTCCIL+NMLHT DGM L E+
Sbjct: 21 VLAWLTILGKGNCFASIFQMSWMSAKTVQGVFHKFCRLFAREMYDEHIHLPAEESGKLHHVMKQYDRLG-----------------CPYNQARSYTGKDWFPTIAYQVTVDHASRAIAVTEGFTGSTNDKTIVCWDAAVDKIRTDKQYTEKTFDLYNEDGTTTTLKGCYFLDDNGYHKWQILIEPSKYPLSEDDLLFSKRLESVRKDVECFFGILKGRFRILKLAMAYQSQERIDNVFFTCCILHNMLHTFDGMDQLVEN 263
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: D7FSK2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK2_ECTSI) HSP 1 Score: 354 bits (909), Expect = 1.540e-120 Identity = 166/218 (76.15%), Postives = 188/218 (86.24%), Query Frame = 1
Query: 127 MYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
MYDEHI LP+EE+G+LD V+ QY++LGF GAMGS DVTHI WSRCPYNQ RSYTGKEG PT+GYQVTV+HAGR +AVTEGFTGSTNDKT +C D AV++IRTDK Y EK F V+ +DGTT TLKGCY++VDNGYHKW++LIEPSKYPLSE DLLFSKRLESVRKDVECF GILK R RIL LAM +Q QER+D VFFTCCIL+NMLHT DGM L E+
Sbjct: 1 MYDEHIHLPTEESGKLDLVIEQYDRLGFTGAMGSMDVTHIAWSRCPYNQARSYTGKEGFPTIGYQVTVDHAGRAIAVTEGFTGSTNDKTTVCWDAAVEKIRTDKQYTEKTFDVYNQDGTTTTLKGCYVLVDNGYHKWQILIEPSKYPLSENDLLFSKRLESVRKDVECFFGILKGRLRILMLAMAFQSQERIDNVFFTCCILHNMLHTFDGMDQLVEN 218
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: A0A6H5KY50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY50_9PHAE) HSP 1 Score: 352 bits (903), Expect = 5.940e-118 Identity = 166/260 (63.85%), Postives = 206/260 (79.23%), Query Frame = 1
Query: 1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
VLACL IL RGNVF IY++S++S TV FH+FC++FA E+YDE+++LP+ E+ L +VM QY+++GFPGA+GSTDVTHI W CPYNQ R YTGKEGKPTV +QVTV+H+GRVLAVT GFTG+TNDKTII D+AV RIRTD +Y E+ + ++ +DG KGCYL+VDNGYHKWR LI PSK P+ DL+FSKRLES RKDVEC+ GILK RFRI KLA+ + KQE +D VFFTCCIL+NMLH+ D G + E+
Sbjct: 84 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEE 341
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: A0A6H5JPH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPH7_9PHAE) HSP 1 Score: 352 bits (903), Expect = 1.040e-116 Identity = 166/260 (63.85%), Postives = 206/260 (79.23%), Query Frame = 1
Query: 1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
VLACL IL RGNVF IY++S++S TV FH+FC++FA E+YDE+++LP+ E+ L +VM QY+++GFPGA+GSTDVTHI W CPYNQ R YTGKEGKPTV +QVTV+H+GRVLAVT GFTG+TNDKTII D+AV RIRTD +Y E+ + ++ +DG KGCYL+VDNGYHKWR LI PSK P+ DL+FSKRLES RKDVEC+ GILK RFRI KLA+ + KQE +D VFFTCCIL+NMLH+ D G + E+
Sbjct: 175 VLACLQILSRGNVFADIYHMSFISFQTVASTFHRFCKYFAAELYDEYVYLPTGED--LRKVMEQYDRIGFPGAVGSTDVTHIYWGMCPYNQARIYTGKEGKPTVAFQVTVDHSGRVLAVTRGFTGATNDKTIIRYDKAVTRIRTDPVYTEQKYKLYAQDGQQFEEKGCYLLVDNGYHKWRTLIPPSKCPIDRGDLIFSKRLESARKDVECYFGILKGRFRINKLAIGFHKQEYIDNVFFTCCILHNMLHSFDNRGDMSEE 432
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE) HSP 1 Score: 350 bits (898), Expect = 3.760e-116 Identity = 170/260 (65.38%), Postives = 201/260 (77.31%), Query Frame = 1
Query: 1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
VLACL IL RGN F IY++S++S T FH+F +FA EMY EHIFLP+ + + +VM QY++LGF GA GSTDVTHI W CPYNQ RSYTGKEG PTV YQVTV+H RVLAVT GFTGSTNDK+II D AV +IR D +Y+EK FTV++ DGT LKGCYL+VDNGYHKW LI PSKYP+ + DL FSKRLESVRKDVECF GI+K RFRILKL++ Y KQE +D VFFTCCIL+NMLH++D +EE+
Sbjct: 159 VLACLQILARGNCFADIYHMSFISMQTAAATFHRFTRYFAREMYAEHIFLPTGDYQK--KVMTQYDRLGFSGATGSTDVTHIPWGMCPYNQARSYTGKEGYPTVAYQVTVDHTKRVLAVTPGFTGSTNDKSIIRYDTAVTKIREDPIYSEKEFTVYEADGTPYQLKGCYLLVDNGYHKWVTLIPPSKYPIDQNDLAFSKRLESVRKDVECFFGIVKGRFRILKLSIPYHKQEDIDNVFFTCCILHNMLHSYDNKSEMEEE 416
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: D7FPI7_ECTSI (Transposon protein, putative, Pong sub-class n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPI7_ECTSI) HSP 1 Score: 299 bits (766), Expect = 3.230e-97 Identity = 138/189 (73.02%), Postives = 158/189 (83.60%), Query Frame = 1
Query: 1 VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYP 567
VLA LTILGRGN F SIY +SWMS TVQ +FH FC+HFA EMYDEHI+LPSE+NGELD VM QY++LGF GAMGS DVTHI W++CPYN RSYTGKEG PT+GYQVTVNHAGR AVTEGFTGSTNDKTI+C D AV++IRTDK Y EK F V+ +DGTT TLKGCYL+VDNGYHKW++L+ + P
Sbjct: 126 VLAWLTILGRGNCFASIYQMSWMSAATVQAMFHMFCKHFAREMYDEHIYLPSEQNGELDHVMKQYDRLGFSGAMGSMDVTHIVWNKCPYNLPRSYTGKEGVPTIGYQVTVNHAGRASAVTEGFTGSTNDKTIVCWDAAVEKIRTDKQYTEKTFDVYNEDGTTTTLKGCYLLVDNGYHKWQILMGAHQVP 314
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE) HSP 1 Score: 296 bits (759), Expect = 1.130e-96 Identity = 145/254 (57.09%), Postives = 177/254 (69.69%), Query Frame = 1
Query: 19 ILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLPSEENGELDRVMGQYEKLGFPGAMGSTDVTHIGWSRCPYNQGRSYTGKEGKPTVGYQVTVNHAGRVLAVTEGFTGSTNDKTIICCDEAVDRIRTDKLYAEKPFTVHKKDGTTETLKGCYLIVDNGYHKWRMLIEPSKYPLSETDLLFSKRLESVRKDVECFLGILKMRFRILKLAMTYQKQERLDYVFFTCCILYNMLHTHDGMGGLEED 780
+LG+GN F + LS MS Q FH+FC HFA EM+DEHI+LP+ LD VMG + +LG+ GA GSTDVTHIGW+ CP+ GRS+TGKEG PT+ Y VTV+H GR LAVT GFTG+TNDKTII D V++IRT Y E+ + + K +GT +GC+LIVDNGYH+W LI PSKYP D FS+ LESVRKDV CF RILKL M Y K+E +D +FFTCCIL+NMLHT DG+ EE+
Sbjct: 43 VLGKGNCFDDVEQLSKMSKSMAQPTFHKFCRHFAAEMFDEHIYLPT--GTYLDEVMGIFHQLGWTGACGSTDVTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTKRMRRGCFLIVDNGYHEWVTLIAPSKYPQRNEDTAFSRDLESVRKDVGCF--------RILKLRMPYHKREYVDNIFFTCCILHNMLHTFDGLDVFEEN 286 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig206.10.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig206.10.1 >prot_P-littoralis_Contig206.10.1 ID=prot_P-littoralis_Contig206.10.1|Name=mRNA_P-littoralis_Contig206.10.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=260bp VLACLTILGRGNVFGSIYNLSWMSTPTVQKVFHQFCEHFATEMYDEHIFLback to top mRNA from alignment at P-littoralis_Contig206:64273..65253- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig206.10.1 ID=mRNA_P-littoralis_Contig206.10.1|Name=mRNA_P-littoralis_Contig206.10.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=981bp|location=Sequence derived from alignment at P-littoralis_Contig206:64273..65253- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig206:64273..65253- >mRNA_P-littoralis_Contig206.10.1 ID=mRNA_P-littoralis_Contig206.10.1|Name=mRNA_P-littoralis_Contig206.10.1|organism=Pylaiella littoralis U1_48|type=CDS|length=780bp|location=Sequence derived from alignment at P-littoralis_Contig206:64273..65253- (Pylaiella littoralis U1_48)back to top |