mRNA_P-littoralis_Contig205.76.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig205.76.1
Unique NamemRNA_P-littoralis_Contig205.76.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig205.76.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig205contigP-littoralis_Contig205:381798..382621 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size824
Hectar predicted targeting categoryother localisation
Exons1
Cds size414
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790000.0752661-UTR-P-littoralis_Contig205:381797..3821531680790000.0752661-UTR-P-littoralis_Contig205:381797..382153Pylaiella littoralis U1_48UTRP-littoralis_Contig205 381798..382153 -
1680790000.0951602-UTR-P-littoralis_Contig205:382567..3826211680790000.0951602-UTR-P-littoralis_Contig205:382567..382621Pylaiella littoralis U1_48UTRP-littoralis_Contig205 382568..382621 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790000.0848577-CDS-P-littoralis_Contig205:382153..3825671680790000.0848577-CDS-P-littoralis_Contig205:382153..382567Pylaiella littoralis U1_48CDSP-littoralis_Contig205 382154..382567 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig205.76.1prot_P-littoralis_Contig205.76.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig205 382154..382567 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig205.76.1

>prot_P-littoralis_Contig205.76.1 ID=prot_P-littoralis_Contig205.76.1|Name=mRNA_P-littoralis_Contig205.76.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=138bp
MLEPTTKDEKAEGEKAPLGLPPRRPLSSGPGSQSAAPAPCGGVDGSARAA
VHEDEDDDGYHTAADEEEKDEGRDRRIHSTSSGSSDTREAREAREVGVMA
CGSRDGNVINGDRGENGADVRLATRRASPWCSWKQRE*
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mRNA from alignment at P-littoralis_Contig205:381798..382621-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig205.76.1 ID=mRNA_P-littoralis_Contig205.76.1|Name=mRNA_P-littoralis_Contig205.76.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=824bp|location=Sequence derived from alignment at P-littoralis_Contig205:381798..382621- (Pylaiella littoralis U1_48)
CAGGGGCAGTCACACCCCATCCTAGCTGTAGCAGGAGCAGGGGAATCACA
CGTGATGTTGGAACCAACGACGAAGGATGAGAAGGCGGAAGGAGAGAAGG
CGCCGCTGGGGCTGCCGCCGCGAAGGCCGCTCTCGTCGGGACCCGGGTCG
CAATCGGCAGCACCGGCACCGTGCGGAGGAGTAGACGGTTCAGCACGCGC
GGCCGTGCATGAGGACGAGGACGACGACGGATACCACACGGCGGCGGACG
AGGAGGAGAAAGACGAGGGCAGGGACCGTCGAATACACTCCACGAGTTCG
GGGTCGTCCGACACACGGGAGGCACGGGAGGCACGGGAGGTGGGGGTGAT
GGCTTGTGGTTCTCGTGACGGAAATGTCATCAATGGAGACCGAGGGGAGA
ATGGGGCAGATGTGAGGTTGGCGACGAGGAGAGCGAGCCCTTGGTGTAGC
TGGAAACAGCGAGAATAATTCGAGAGCCCCCCAGCCTCAATACGGATTGC
ACTCGTACGTAGCGTTTGTTTGCTGTCGGGCTTCCATTTTGCCCGCTGAT
TTAACGAAGCCAGTTATGTTCTTCACGAGAACGGGGCTTGGGGTAGGATG
TGTGACGGGGGGTGGAGGAAATATGCGATGATGATTTCCCTCTGTGTCGA
CTACATGTATTGGGGCTGTTCTGGGGACTCGCAGCCCCAAGGCTGAAGAG
TAGGGATCGACGATTGACGGCTGTGTGGCCTATCCACGTTTTTGCACCCC
TGGTGATTTCCTGCGTAGTTGTTTTGTTCTTGAGAGCGGGTTGGTTCTGC
TACTGGAACGGGGAACCTAATTAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig205:381798..382621-

>mRNA_P-littoralis_Contig205.76.1 ID=mRNA_P-littoralis_Contig205.76.1|Name=mRNA_P-littoralis_Contig205.76.1|organism=Pylaiella littoralis U1_48|type=CDS|length=414bp|location=Sequence derived from alignment at P-littoralis_Contig205:381798..382621- (Pylaiella littoralis U1_48)
ATGTTGGAACCAACGACGAAGGATGAGAAGGCGGAAGGAGAGAAGGCGCC
GCTGGGGCTGCCGCCGCGAAGGCCGCTCTCGTCGGGACCCGGGTCGCAAT
CGGCAGCACCGGCACCGTGCGGAGGAGTAGACGGTTCAGCACGCGCGGCC
GTGCATGAGGACGAGGACGACGACGGATACCACACGGCGGCGGACGAGGA
GGAGAAAGACGAGGGCAGGGACCGTCGAATACACTCCACGAGTTCGGGGT
CGTCCGACACACGGGAGGCACGGGAGGCACGGGAGGTGGGGGTGATGGCT
TGTGGTTCTCGTGACGGAAATGTCATCAATGGAGACCGAGGGGAGAATGG
GGCAGATGTGAGGTTGGCGACGAGGAGAGCGAGCCCTTGGTGTAGCTGGA
AACAGCGAGAATAA
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