mRNA_P-littoralis_Contig205.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig205.72.1
Unique NamemRNA_P-littoralis_Contig205.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig205.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig205contigP-littoralis_Contig205:365192..365740 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size550
Hectar predicted targeting categoryother localisation
Exons1
Cds size549
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790000.0357652-CDS-P-littoralis_Contig205:365191..3657401680790000.0357652-CDS-P-littoralis_Contig205:365191..365740Pylaiella littoralis U1_48CDSP-littoralis_Contig205 365192..365740 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig205.72.1prot_P-littoralis_Contig205.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig205 365192..365740 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig205.72.1

>prot_P-littoralis_Contig205.72.1 ID=prot_P-littoralis_Contig205.72.1|Name=mRNA_P-littoralis_Contig205.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=183bp
LERDQLRRILAGFTAPELCNSHCCLTPVASCPTTAHETMFSSIKVLPVIS
LLSTTYTSKKQHAGGGCGKREHMESAVLLGCMKHDVRLYAQRCVKTDSPG
DSCAVRVLTADVRRVFGSCYLQTLSGVKLLLLSEIRVAHIVCFGFFVLLY
AVNESWHLKGKDRSTAADLIPTVLLLREAALH*
back to top

mRNA from alignment at P-littoralis_Contig205:365192..365740-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig205.72.1 ID=mRNA_P-littoralis_Contig205.72.1|Name=mRNA_P-littoralis_Contig205.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig205:365192..365740- (Pylaiella littoralis U1_48)
CTTGAGCGGGATCAACTGCGCAGAATTTTAGCAGGATTCACCGCACCTGA
ACTATGCAACAGTCACTGCTGCCTCACCCCTGTCGCTTCATGTCCTACAA
CAGCACACGAAACCATGTTCAGCAGCATAAAGGTGTTGCCGGTGATCTCA
TTGCTGTCGACTACGTACACGTCAAAGAAGCAGCATGCGGGTGGCGGGTG
TGGGAAGAGAGAACACATGGAAAGTGCTGTACTGCTCGGTTGTATGAAAC
ATGATGTACGGCTGTATGCGCAACGGTGTGTGAAAACTGACAGTCCCGGA
GACAGCTGTGCTGTACGCGTGTTGACTGCTGATGTTCGGAGAGTGTTTGG
ATCATGTTACCTACAGACTTTGTCGGGGGTGAAATTGCTACTGCTCTCCG
AGATTCGTGTGGCACACATTGTCTGTTTTGGATTTTTTGTGCTGCTGTAC
GCTGTGAACGAGTCATGGCATCTCAAGGGGAAGGATCGATCGACCGCGGC
AGATTTGATCCCAACGGTGTTGCTGCTTCGGGAGGCAGCTCTTCATTGA
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig205:365192..365740-

>mRNA_P-littoralis_Contig205.72.1 ID=mRNA_P-littoralis_Contig205.72.1|Name=mRNA_P-littoralis_Contig205.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=549bp|location=Sequence derived from alignment at P-littoralis_Contig205:365192..365740- (Pylaiella littoralis U1_48)
CTTGAGCGGGATCAACTGCGCAGAATTTTAGCAGGATTCACCGCACCTGA
ACTATGCAACAGTCACTGCTGCCTCACCCCTGTCGCTTCATGTCCTACAA
CAGCACACGAAACCATGTTCAGCAGCATAAAGGTGTTGCCGGTGATCTCA
TTGCTGTCGACTACGTACACGTCAAAGAAGCAGCATGCGGGTGGCGGGTG
TGGGAAGAGAGAACACATGGAAAGTGCTGTACTGCTCGGTTGTATGAAAC
ATGATGTACGGCTGTATGCGCAACGGTGTGTGAAAACTGACAGTCCCGGA
GACAGCTGTGCTGTACGCGTGTTGACTGCTGATGTTCGGAGAGTGTTTGG
ATCATGTTACCTACAGACTTTGTCGGGGGTGAAATTGCTACTGCTCTCCG
AGATTCGTGTGGCACACATTGTCTGTTTTGGATTTTTTGTGCTGCTGTAC
GCTGTGAACGAGTCATGGCATCTCAAGGGGAAGGATCGATCGACCGCGGC
AGATTTGATCCCAACGGTGTTGCTGCTTCGGGAGGCAGCTCTTCATTGA
back to top