mRNA_P-littoralis_Contig205.6.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig205.6.4
Unique NamemRNA_P-littoralis_Contig205.6.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig205.6.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig205contigP-littoralis_Contig205:54278..58766 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size2095
Hectar predicted targeting categoryother localisation
Exons3
Cds size1968
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.6913068-CDS-P-littoralis_Contig205:54277..561171680789999.6913068-CDS-P-littoralis_Contig205:54277..56117Pylaiella littoralis U1_48CDSP-littoralis_Contig205 54278..56117 -
1680789999.7101922-CDS-P-littoralis_Contig205:58079..582071680789999.7101922-CDS-P-littoralis_Contig205:58079..58207Pylaiella littoralis U1_48CDSP-littoralis_Contig205 58080..58207 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.7222164-UTR-P-littoralis_Contig205:58207..582101680789999.7222164-UTR-P-littoralis_Contig205:58207..58210Pylaiella littoralis U1_48UTRP-littoralis_Contig205 58208..58210 -
1680789999.7339768-UTR-P-littoralis_Contig205:58644..587661680789999.7339768-UTR-P-littoralis_Contig205:58644..58766Pylaiella littoralis U1_48UTRP-littoralis_Contig205 58645..58766 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig205.6.4prot_P-littoralis_Contig205.6.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig205 54278..58207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig205.6.4

>prot_P-littoralis_Contig205.6.4 ID=prot_P-littoralis_Contig205.6.4|Name=mRNA_P-littoralis_Contig205.6.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=656bp
MAAPAAEGGTEDLDRAAGIRAGSAANLAERVEVETGPTRGEPSASNGPPA
GSVMASSPEGKRPGSAAAAFAAAAAADDHGDDAAAAAAAAVARYTRSAQR
SSTRIAIRLSELPASHANSRTARDRRRRSRSGGGSSVEDRPNSAAGGLHA
GRSGRSTRQHAAKTPAGVAAAAAGSSKRTSRRLAGEKAAIDMKDASDILD
KIVHASKRARARAGAEKPKTVKSKAGKKGKKGRAKQQRQQKKQQQQQAQE
QQNQQQPRREDSKSDALPPAEGDTMCDPSADGAVGGGGGRNDGSEEAAVV
AAAAAAAAAGATDNDMAGPKSDLVKGIASADSPSSSSPTHASSGPPVATN
MATVVQPETSSSGENDTGVALLAPRSTFIIAEATQSEVIPVWTTGRTPEA
EEQIPLSPEKYEESRGGDKVGVDQSRAAELHAEQGQGLLRQQRKDTEQEQ
GQVVAGGVCQDRAGASTAAVAAAYPSFAAAAAADADADAGSTAATTVSAA
TGGGELYGAEAEETHPAAKRLKGWQAFPEEELQSAPSSGEGKDANEMDSN
LLSERPAMNRGDDGVNGSSSAPEDESSKESPTQPEPDSMRKEGSATEKQP
PALGSSNRPKRKGSTIAPKGGNKLMAVDGSVTGGRELAAHGRPHRRAAAS
RESPPL
back to top

mRNA from alignment at P-littoralis_Contig205:54278..58766-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig205.6.4 ID=mRNA_P-littoralis_Contig205.6.4|Name=mRNA_P-littoralis_Contig205.6.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=4489bp|location=Sequence derived from alignment at P-littoralis_Contig205:54278..58766- (Pylaiella littoralis U1_48)
CGGCGAGATTGGCCTCTATCCGGCCGTCTACCTCCTCCATTTGTTTGTAA
ACTACATCAACAGGGAAGGCGTGTGAGATATCCTGTGGTTTGAGGGTTGC
ATCGACTCTCTCTTCTGCCGAGGTGCGGTGCTCTGAAAGGATGGCGTATG
TGCTTACCAGCCTTCACGTGTTCCAACACAGCAACTGGTTTTCTTTTTTT
GGTTTTCCCTGTGGTACGAAGTTAAACCTGAAACCCTGTCTGCCCGACGA
AGAAGGGCGAACAAGCTTAGCATACTGTCGAGAAGATCGGCCTAGAGGTG
GACCTACATCGCGAACTCCCGCAGGGGCCTAAGCTCGTAGTCTACCAAGG
CGTGCTTGCTTCTGTGAAGCAGTCGGTACCTTTGACAAACTGAACCTGAC
ATTTTTCCTGCGGAGACGAGTGAGCCTGCCACATTGATACATAAAACAAG
TGTTCTGGACACTCCTGTAATTATACTTGCCCTGAAATTTCAAATACCTC
TCGGTGGCCCCCGCCGGCGGCGTGTGGGTGTTTCCTTCGCGCTTCTCCGC
GCTCAGGGGATGGCTGCACCAGCGGCCGAGGGGGGGACGGAGGATCTCGA
TCGTGCTGCGGGAATCAGAGCGGGCAGTGCTGCTAACCTGGCCGAACGTG
TGGAGGTTGAAACTGGTCCTACCCGTGGAGAACCAAGGTACAGCAGTAGT
ACAGCAGTATGCCTCGCGGTTGGCAGGGTTCCTACACTTGGCAGACGTCT
ACATACGATACTTTGCTGCTGTCCTGCTACACCTGGTATCATTCAGCAGT
ACTCATGTAAGTCATGAATGCCAGACAGTTCGTTGTGATTCAAACATGCC
AGACGATTTGACAGCAGTAGCGAGCCCCTCGCACGTACCGTTTGTCAGTG
AACAGGCCCCATGCGGGCACCCAACCGTACAAAGACGATCTTGTAAAATC
CACGAGGCGACTTCGCACAACTCCTGCACAGAGCAGTACCAGGTTGTTTG
TTGTTGATTCTCACATTAGCTCATCGCCAAAATCTAGCCCAGGTACTCCT
GTACAGCAGCGCAAGTTCAAAGATCCAGAGTTGGGTACAACTGATCCAGA
GTTTACTGGTCCAACCCAATGCACACCACCACAAATAAAGCTGACTTTGC
ACCTGACTGTTATGTCCATGAAATGGCGCACAGCTGCTGTTCCAAGAACC
TTGCTCTTCTTCCATGGTGAAAACATTTGTTTCCTTCAATGCCACCGACC
TCCCCCGCCGTGGTCACACAAACTGTATACCCCAAACACCACTTTTGTAG
GAGTCACGTGTTCGAAGTACTCTTCAATCTCCGCTGGCAGTGAATGTACC
GGCTTTAAATCACAATGAGTAGTTTTAAACCTCGTTTAGGGCCGGTGCCC
TCTCTGTAGTGTCGATGAAAGGGGTTGGCACGTGGTGGCCTGATACGACC
ATTACAGCATGCTGTACTCGTACGAGTACCAATCTCGAATGCTGTACTAT
CTACCTGTATGATGCCATTCATCAAAGCCGCAATACGTTGAAGCGCTCTG
TGGACATTTGTCGTGTGAAAGCTTCCATGGCTTCCATGCTTGTTATGACA
ACAGAGATTCCACTTCCGTGAAGTTGTTTTAAGCCCACGCTGCGTTCAGT
CAAAAAAAGGGGGAGGGGGGGAGGGGGGGGGGCTGGACAGGAACGGCGTT
TCGCAAACATAAATAAAATAGCTTGAACATATAGTCAGGGGTTTGCAAAC
ATGCAGCTTTACTTCGAGCGGGCCAAAAAAATAGCCCATGAAAATATATA
TTTTTGGAGGCTATATGGGGACCGTAGATTGAAATTTATCTCGCTGCAAG
GCGTTCAAACCCCGATCTTCACACCTGTACAAATCGCCCGGTAAACCGGC
TACATTCGCGTCAAATCCGTTTCTTGGTCAGGGTTACACACGTGGCAGCA
TCGCGCAAACGTACCCAGCAGATCTCCCTTTTTTGGTCCAATTTTTTTGC
TGCCTGCTGCTACCATCAAGGCATGGGGCGCCACTCACGCACCACATCGG
TGGGCTGTGGCAATCAGCAGCGCGGTTGCTCGTGAGGAGCTTGCTCTGTC
GGCAACTGAAGCATAGCTTCTGGAGTGTTATCACCACAAATCCCTTGCTG
GGACATCGTGCTCCATGCGTGAATTTCGGGCACCTCGATCTCGTGCTTCA
AGGCCTCTGCTGAGAAGCTGCACAAGAGCGATCGATACAGGAGTTCAAAT
AGATGCGATTGAGGTACTAAGGTGCTGGGCTTCCTGCTCTGTCAAGGCAG
AACGGGGTAGGGGAGGATACGGAGAGTGCAGCAGTCAAGGGGGGCACCAC
CAAGGATTTTTCGTGTGGAAGTTTGACATGACGGAAACAAAATACATCGT
GGGAGCCAAAAGTACCATCACTATGTCCCGGGAAACCGAGACGGCTCCAC
ACAAGCTTTGCCTCAACGCCCATGGAACCACAGGCTTCAGAACATCAGGT
CATGTTGGCACGTTAAAAATGCTCCCGCAAACTGCACGTTATCTTTCTTT
ACCAACCTCGACGCGACCAGCGGCGGCTCATTTCGTTTTTCGTTTTACTA
ACGGCGCTCGACTTATTTCCTGCCGTCTCACTGACATTCATCTTTGCAGC
GCTAGCAATGGTCCGCCGGCTGGAAGCGTAATGGCTTCTTCTCCTGAGGG
TAAGAGACCTGGTTCTGCTGCAGCTGCTTTTGCTGCTGCTGCTGCTGCCG
ATGATCATGGTGATGATGCTGCTGCTGCTGCTGCTGCTGCCGTTGCTAGG
TACACGAGATCGGCCCAGCGGTCGTCGACCCGTATCGCCATTCGACTGTC
TGAGTTACCAGCATCACATGCGAATTCCCGCACCGCGAGGGACAGGCGTC
GTAGGAGTCGGAGCGGCGGTGGAAGCTCGGTCGAAGATAGGCCAAATAGT
GCAGCGGGTGGCTTGCATGCTGGCCGATCCGGTCGTAGCACGAGGCAGCA
CGCCGCGAAGACGCCGGCAGGGGTGGCAGCAGCAGCCGCGGGTTCGTCGA
AGCGGACGTCTCGAAGGCTGGCCGGCGAGAAGGCGGCAATTGACATGAAG
GACGCGTCCGACATTCTAGACAAGATTGTTCACGCCAGCAAGCGGGCGAG
GGCGAGGGCGGGAGCAGAGAAACCGAAAACAGTGAAATCGAAGGCAGGTA
AAAAGGGCAAAAAGGGCCGGGCGAAGCAGCAGCGGCAGCAGAAAAAGCAG
CAGCAGCAGCAAGCACAAGAGCAACAAAATCAGCAGCAGCCCCGCCGGGA
AGATTCCAAGTCTGATGCTTTACCTCCAGCGGAGGGCGATACCATGTGTG
ATCCCAGTGCTGATGGTGCTGTCGGCGGTGGCGGTGGTCGTAATGATGGA
TCTGAAGAGGCTGCTGTTGTTGCTGCTGCTGCCGCTGCTGCTGCTGCTGG
GGCTACCGACAATGATATGGCGGGCCCAAAGTCAGACCTCGTAAAGGGTA
TAGCATCGGCAGATTCGCCTTCTTCGTCTTCGCCGACACACGCTTCCTCC
GGCCCTCCCGTCGCCACCAACATGGCTACTGTTGTCCAACCTGAAACCTC
CTCCAGCGGCGAAAATGACACTGGGGTGGCATTGCTGGCACCCCGGTCAA
CGTTTATCATTGCCGAAGCGACACAGTCGGAGGTCATCCCGGTTTGGACT
ACTGGCCGCACACCGGAGGCCGAAGAGCAGATTCCCCTTTCGCCTGAAAA
ATACGAGGAAAGCCGTGGTGGTGACAAGGTCGGGGTCGACCAAAGCCGGG
CCGCCGAACTGCATGCAGAGCAGGGGCAGGGGCTGCTGCGACAGCAGCGG
AAAGACACAGAGCAAGAGCAGGGGCAAGTGGTAGCCGGAGGTGTTTGCCA
GGATCGAGCTGGGGCTTCTACCGCTGCTGTTGCTGCCGCTTATCCTTCTT
TCGCTGCTGCTGCTGCTGCTGATGCTGATGCTGATGCTGGGTCTACTGCT
GCTACTACTGTCTCTGCCGCAACCGGTGGTGGTGAGTTGTATGGTGCCGA
GGCGGAGGAGACACATCCAGCTGCGAAGAGATTGAAGGGGTGGCAAGCCT
TTCCGGAAGAAGAGCTGCAGTCGGCACCTAGCAGTGGTGAAGGCAAGGAT
GCTAACGAGATGGACTCGAACCTGCTCTCGGAACGACCGGCGATGAACCG
TGGTGACGACGGTGTGAATGGATCATCCTCCGCACCGGAGGACGAAAGTT
CGAAGGAATCCCCCACCCAGCCGGAACCTGACTCCATGCGAAAGGAGGGG
AGTGCTACCGAGAAGCAGCCTCCCGCCTTGGGTAGCAGCAACAGGCCCAA
ACGTAAGGGCTCGACGATCGCCCCAAAGGGAGGAAATAAGCTCATGGCGG
TCGATGGTTCAGTGACCGGTGGGCGTGAACTGGCTGCCCACGGCCGCCCT
CATCGCCGAGCCGCCGCCTCAAGGGAATCGCCACCGCTG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig205:54278..58766-

>mRNA_P-littoralis_Contig205.6.4 ID=mRNA_P-littoralis_Contig205.6.4|Name=mRNA_P-littoralis_Contig205.6.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1968bp|location=Sequence derived from alignment at P-littoralis_Contig205:54278..58766- (Pylaiella littoralis U1_48)
ATGGCTGCACCAGCGGCCGAGGGGGGGACGGAGGATCTCGATCGTGCTGC
GGGAATCAGAGCGGGCAGTGCTGCTAACCTGGCCGAACGTGTGGAGGTTG
AAACTGGTCCTACCCGTGGAGAACCAAGCGCTAGCAATGGTCCGCCGGCT
GGAAGCGTAATGGCTTCTTCTCCTGAGGGTAAGAGACCTGGTTCTGCTGC
AGCTGCTTTTGCTGCTGCTGCTGCTGCCGATGATCATGGTGATGATGCTG
CTGCTGCTGCTGCTGCTGCCGTTGCTAGGTACACGAGATCGGCCCAGCGG
TCGTCGACCCGTATCGCCATTCGACTGTCTGAGTTACCAGCATCACATGC
GAATTCCCGCACCGCGAGGGACAGGCGTCGTAGGAGTCGGAGCGGCGGTG
GAAGCTCGGTCGAAGATAGGCCAAATAGTGCAGCGGGTGGCTTGCATGCT
GGCCGATCCGGTCGTAGCACGAGGCAGCACGCCGCGAAGACGCCGGCAGG
GGTGGCAGCAGCAGCCGCGGGTTCGTCGAAGCGGACGTCTCGAAGGCTGG
CCGGCGAGAAGGCGGCAATTGACATGAAGGACGCGTCCGACATTCTAGAC
AAGATTGTTCACGCCAGCAAGCGGGCGAGGGCGAGGGCGGGAGCAGAGAA
ACCGAAAACAGTGAAATCGAAGGCAGGTAAAAAGGGCAAAAAGGGCCGGG
CGAAGCAGCAGCGGCAGCAGAAAAAGCAGCAGCAGCAGCAAGCACAAGAG
CAACAAAATCAGCAGCAGCCCCGCCGGGAAGATTCCAAGTCTGATGCTTT
ACCTCCAGCGGAGGGCGATACCATGTGTGATCCCAGTGCTGATGGTGCTG
TCGGCGGTGGCGGTGGTCGTAATGATGGATCTGAAGAGGCTGCTGTTGTT
GCTGCTGCTGCCGCTGCTGCTGCTGCTGGGGCTACCGACAATGATATGGC
GGGCCCAAAGTCAGACCTCGTAAAGGGTATAGCATCGGCAGATTCGCCTT
CTTCGTCTTCGCCGACACACGCTTCCTCCGGCCCTCCCGTCGCCACCAAC
ATGGCTACTGTTGTCCAACCTGAAACCTCCTCCAGCGGCGAAAATGACAC
TGGGGTGGCATTGCTGGCACCCCGGTCAACGTTTATCATTGCCGAAGCGA
CACAGTCGGAGGTCATCCCGGTTTGGACTACTGGCCGCACACCGGAGGCC
GAAGAGCAGATTCCCCTTTCGCCTGAAAAATACGAGGAAAGCCGTGGTGG
TGACAAGGTCGGGGTCGACCAAAGCCGGGCCGCCGAACTGCATGCAGAGC
AGGGGCAGGGGCTGCTGCGACAGCAGCGGAAAGACACAGAGCAAGAGCAG
GGGCAAGTGGTAGCCGGAGGTGTTTGCCAGGATCGAGCTGGGGCTTCTAC
CGCTGCTGTTGCTGCCGCTTATCCTTCTTTCGCTGCTGCTGCTGCTGCTG
ATGCTGATGCTGATGCTGGGTCTACTGCTGCTACTACTGTCTCTGCCGCA
ACCGGTGGTGGTGAGTTGTATGGTGCCGAGGCGGAGGAGACACATCCAGC
TGCGAAGAGATTGAAGGGGTGGCAAGCCTTTCCGGAAGAAGAGCTGCAGT
CGGCACCTAGCAGTGGTGAAGGCAAGGATGCTAACGAGATGGACTCGAAC
CTGCTCTCGGAACGACCGGCGATGAACCGTGGTGACGACGGTGTGAATGG
ATCATCCTCCGCACCGGAGGACGAAAGTTCGAAGGAATCCCCCACCCAGC
CGGAACCTGACTCCATGCGAAAGGAGGGGAGTGCTACCGAGAAGCAGCCT
CCCGCCTTGGGTAGCAGCAACAGGCCCAAACGTAAGGGCTCGACGATCGC
CCCAAAGGGAGGAAATAAGCTCATGGCGGTCGATGGTTCAGTGACCGGTG
GGCGTGAACTGGCTGCCCACGGCCGCCCTCATCGCCGAGCCGCCGCCTCA
AGGGAATCGCCACCGCTG
back to top