mRNA_P-littoralis_Contig205.47.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig205.47.1
Unique NamemRNA_P-littoralis_Contig205.47.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig205.47.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig205contigP-littoralis_Contig205:276169..279793 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size342
Hectar predicted targeting categoryother localisation
Exons2
Cds size270
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.7683363-UTR-P-littoralis_Contig205:276168..2762401680789999.7683363-UTR-P-littoralis_Contig205:276168..276240Pylaiella littoralis U1_48UTRP-littoralis_Contig205 276169..276240 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.7783446-CDS-P-littoralis_Contig205:276240..2764281680789999.7783446-CDS-P-littoralis_Contig205:276240..276428Pylaiella littoralis U1_48CDSP-littoralis_Contig205 276241..276428 +
1680789999.7892008-CDS-P-littoralis_Contig205:279711..2797931680789999.7892008-CDS-P-littoralis_Contig205:279711..279793Pylaiella littoralis U1_48CDSP-littoralis_Contig205 279712..279793 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig205.47.1prot_P-littoralis_Contig205.47.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig205 276241..279793 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig205.47.1

>prot_P-littoralis_Contig205.47.1 ID=prot_P-littoralis_Contig205.47.1|Name=mRNA_P-littoralis_Contig205.47.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=90bp
MVSKSHFLYPATLGWFQITVGEKHSLLDLWHCSSSSNNNHNNSSSFIRAE
EHRTPRSPTAIIMLNSHDCDTDMSGSTESNLRVPVASGGG
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mRNA from alignment at P-littoralis_Contig205:276169..279793+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig205.47.1 ID=mRNA_P-littoralis_Contig205.47.1|Name=mRNA_P-littoralis_Contig205.47.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=3625bp|location=Sequence derived from alignment at P-littoralis_Contig205:276169..279793+ (Pylaiella littoralis U1_48)
TCCAAACAAAACGAAAAGATACGAAAAATGTAAAAACATGGAACAACAAC
AGGTCAGGTGTTTTCTCTCTGAATGGTTTCGAAGAGCCACTTTCTCTACC
CGGCAACGCTTGGTTGGTTTCAAATTACTGTAGGCGAGAAACACTCACTT
CTGGACTTGTGGCATTGCAGCAGCAGCAGCAACAACAACCACAACAACAG
CAGCAGCTTCATTCGAGCAGAAGAGCATCGGACCCCCAGATCTCCAACGG
CCATCATCATGTAAGTGAACGGAAGACGGCTCTTTTATACAAGCCATTTT
TCACGGGGTCCGTGTACGAGAGTTCGTACTGCGTAGCTTTCGGAGGTGAA
ACATATACCATCTCGTTGACGGTGGCTCGGCGAGATGATGACCTTCACTC
CAGTGTACTACCTGACGGGGATGGGCTCTGCTGCTGTCGTTTGTATTTCA
TACCTGGTACCTCTTACGTACCATCACAATGCAAGAAGAACAGCAGCAAG
CAGCGGTCAGGCATGTTTCCGTCTCCGATGTACCTCCGGTATACATGTAC
TCTGTGTGTGTGTGTGTTGTCATCCCATGTTCTCTGGCACACTAGTCTGC
AAACTACAGGCTAGGCCCATCGACGGGGTCACACAGGAGGAAGGTCAACA
CAGGAGGAGTTACCCCCACCTTCCTTCTGCGGTACATGCGTGAGATTTTT
TTCTCGCGAGCAGGGGTCCGCGGTCCCTACCCTCGTCGTATGCGCTGATG
ACGCTCTCTTCCTCTCTCTCTCTGTCTCTCTCTCTCTTTCGCTAAAATCC
CGGCGATTGGGCGAGAGAAGAGATGGCCCTGCCTATTAGTTCCAAACCGT
CTGTCTTGTGCGCAGTCCTGGCATTGAATGAATGCCCCCCCGCATCCCGA
GCTCCGGCACCAGCATGAGAGGCGTTGCCTCCAGGAGTTGATTGAGCAGA
ATAGAGTCAGCCAGGGCTTTGGTTGCATTTCCAAAAATAAATGCTTCACT
GATCAAACCTCTTTTTTTTTAATTTCCCCAGACACCAAACAACGAACGGC
TGCTCTGCTGCTCTCTCTTTGTCTTGTATGTAGTCAGAGGAGACACCTGC
CAATCGGCTGGCTTTGTGATTTTATGCCTTCGACAAGGTTTCAACACTCG
CCGCTTCTCTCAGGGTCTCACAGCAAACAGCAGGAGCAGGAGAGACATCT
ATAACGGGTGTGGTACTCACTACTGCGTACATCAATGAATTATGGTTCCC
AAAGCATTTAGGTGTAGAGCAACACAGAGAGGCGGAGAGCGCGTGGAAAG
GCTCTGGGCCCAAACTTTCGCCCGCAGGAGATTTGAAACTCTTTCCAACC
AAAAAAATGATGCTCTGTCTTCTGTCTCTCTTCTCTGTGTGCAACTGCTG
TATCATCTGGTATACTGCCGGATGTACTTGGTTTGGGTCCGGCGACAAAA
CAACACACATCAGACCACAGACATTATAAATCTCACTGCAGCCCTGCTGC
TGCGGCGGGGGTGCTTGGAGCTCCGCGGATGACACACGCGTCAGAAGGTT
GTTGTGTGGTCTGTTGGTCTGTTTCGTTTGAGGTACTTCGTGCACCGATC
AAAGATCAAAGCGCGTGCACTTGTTGGTATCATTGCTACGGTTGAAAGCG
AAGGTGGAGAGGAAGGGAGGTCACAGCAGTGACACACACAGAGAAGATGC
AGGCGGCCTGAAGACACACTGAAGACCTCTGTAGAAAAGTAAAAAAATAT
CCCCGCGCTTTGGGCAGGAAAAACGACGGCTGAAAAAAAATACCCCCCTG
TCTCACTGCAAGTACTTCACATATCTCGCAACGATTTTACCGGTATTACA
GCAGTATTGGGTCTGGATGATGGTGCTTGTGGAACGATTTCATGATGTGC
GTGTACTATCGTGTGTGTGTAGTCTGATGCCTTCAATAAGTGGGTTGTAA
AAGACCCTGCTGCTTCCGGACTCCTTTCCAGCTGCGTCACAAGAAGTAGC
AGCAGTACAGTAGTGCAGGCATTTACCGGGTATCTACGCGCGGTGGTGTC
TGAAGCGTACATCGTGCGTTCGCGGTGGTTTTTTGACATACACAGGCGGG
AGAGAGAGGAACATCCATCTGAGTTTTTGTTTCTGAGTTGGAGCTACAGG
ACTTCTACATTATTATACACTGCTGCTGCTGCTGCTGTTGTACAACCGAA
GTGTACAACAACAACAGTACAGAGGATGGACTACAGCACAGAGCACTTTA
TACCAAGACAGCAGTTGTGTGGCCGTGTGATCATGATCGTTTAGCTAGTG
TGTCAAGGTGTCGTGTTGAGTTCCGAACGAACGCCTTTTTTTATTGCTTA
TTTTATTGTTTTTTAGGATCTTCCCGGACCATCATGACATGAACCAGCAC
AGCAGCACAGCCCATCCGTGCCGGCACACTGCGTAAAGCAACAAGCTGCC
AAGCATCTACTGATCTGCCAGGCACAGCAGCAGAAGCAACCCGACCCGCG
AATCCGCCCCAGCAGCAGCCCGGCCGGGGCAGCGAAAATAAACTTGTCAA
TCCATTCCTCTGGAGTTAAAATTAATACCGGTGTACTGGTATACTTCACG
AGCAGGAAGGGTGGGTTGGCAGTCGGAAGGGTGTGCGGGCAGGCAGCAGG
GGGTTATCTCCCTTGTGAATAAAACACTTTTCTTCCAGTGCTCAGACGAA
AAACACCACTCTATCTACACGTGGGACACGCAGGAGGTAGTGCTGCTGCA
GCTATGTTTCCATTGTCAACATGTCATGTGTTTGGGGTACCTCATGATGA
ATGAAAAGCAACGTCTGCTGGTTGTTGTATTTACAGTAGTGTACTATCAT
ACTCCGGCGGTTTTCCTCGACGACTGGTCGATGGCGGAAAAAAGACTACC
AGTAATTTCCCTTGGAACAGGCGAACGGAAAACGGAACGGGAACGGAAGG
GAACGGAAGGGAACGGAAGAACCAGTCGAGCTTGCAACGTTTTTACTTTT
TTACTTCTGAAATCGGTATCCAGTCTGGAATAGAAGGTTCTTCGAGGACC
CAACATGCAAGGAAAATGTGAAAACGCGGGCCAGAACATGTCTCCGCGTG
TCTCGCCTCGACACTACCTGTACAATAGATGTGTGTGCAGCTGCGTGCGT
GTGTTGTCATCCCTTTAATTGGACGCCACTCTACACCTTTCGGGTAGGTA
GACGCTCCAACCGGGGTCACACAGCAGTAGGATGTCAACACAGGAGTTTT
TTTTTTTTCCTAGCTCTTCGAAAGCGTTTTATCGCGACAAGTCGCGAGAG
GGTTCGTTGACTGTCACCCTTGTTGACCACATATATAAGTCGAACGCATT
TGTACACGAGGAAGAATTACATGCCATGTGTGACCTCTCATTCCATACAT
ATACTGCTGTACAGCGGTATATACTATACTGCTTGCTGAACTGCTCACCA
CGTTTTTTTCGACTTCCCCTCTCTCTCGTACGTTTGATATTCCTGCTTGT
TGTGCTCATGAAATATACCGTTGATTCAAAATGGTGCGTGCAGGTTGAAC
TCCCACGACTGCGATACCGACATGTCCGGGTCAACTGAATCCAACCTTCG
AGTGCCTGTGGCTAGCGGCGGAGGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig205:276169..279793+

>mRNA_P-littoralis_Contig205.47.1 ID=mRNA_P-littoralis_Contig205.47.1|Name=mRNA_P-littoralis_Contig205.47.1|organism=Pylaiella littoralis U1_48|type=CDS|length=270bp|location=Sequence derived from alignment at P-littoralis_Contig205:276169..279793+ (Pylaiella littoralis U1_48)
ATGGTTTCGAAGAGCCACTTTCTCTACCCGGCAACGCTTGGTTGGTTTCA
AATTACTGTAGGCGAGAAACACTCACTTCTGGACTTGTGGCATTGCAGCA
GCAGCAGCAACAACAACCACAACAACAGCAGCAGCTTCATTCGAGCAGAA
GAGCATCGGACCCCCAGATCTCCAACGGCCATCATCATGTTGAACTCCCA
CGACTGCGATACCGACATGTCCGGGTCAACTGAATCCAACCTTCGAGTGC
CTGTGGCTAGCGGCGGAGGC
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