mRNA_P-littoralis_Contig205.4.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig205.4.1
Unique NamemRNA_P-littoralis_Contig205.4.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig205.4.1 vs. uniprot
Match: D7G2Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G2Z6_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 5.480e-84
Identity = 151/228 (66.23%), Postives = 169/228 (74.12%), Query Frame = 2 
Query:  113 VVAVLAQLVDAFAFSSSTLCQTFADASRQGRATRSWRPSSSSRTTALTMMAKNRRERRYADGKGKKSSASKGPKRQPSGPGSDAKWLQVLDKAPEMEIGSVKVVSGKYKGDDKFFTLATHGGNFFAVSEACGRCKFPMINGKVKLLKDGGKAEDVKEGVEQDPEAEVAIGCPLCGAMFDLRTGAIAGEQPKGLAQMLVSKVVSQTPVESIKTYQAQALSTGAVIVRVD 796
            +V VL  LVDAFA  SS    T A A    R+TRS         T +           YA+ K KKSS SK   +QPSG  S+AKWLQVLD   E+E GSVKVVSGKYKG+D+ FTLA +GG ++AVSEACGRCKFP+INGKVKLL  GGKAEDVK GVEQDPEAE+AI CPLCGAMF+LRTG IAGEQPKGLAQ+LVSKVVSQTP ESI T+QAQ LSTGAV+VRVD
Sbjct:    1 MVVVLVPLVDAFALGSSAGWHTHAVARPATRSTRS--------LTTMMXXXXXXXXXXYAEAKNKKSSGSK---QQPSGATSNAKWLQVLDSTSELEPGSVKVVSGKYKGEDRVFTLAAYGGTYYAVSEACGRCKFPLINGKVKLLTGGGKAEDVKPGVEQDPEAEIAIACPLCGAMFNLRTGEIAGEQPKGLAQVLVSKVVSQTPAESITTHQAQVLSTGAVVVRVD 217
[Close]
BLAST of mRNA_P-littoralis_Contig205.4.1 vs. uniprot
Match: W7TAQ7_9STRA (Uncharacterized protein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TAQ7_9STRA)

HSP 1 Score: 70.1 bits (170), Expect = 7.090e-10
Identity = 66/194 (34.02%), Postives = 92/194 (47.42%), Query Frame = 2 
Query:  224 PSSSSRTTALTMMAKNRRERRYADGKGKKSSASKGPKRQPSGPGSDAK-WLQVLDKAPEMEI--GSVKVVSGKYKGDDKFFTLATHG-GNFFAVSEACGRCKFPMINGKVKLLKDGGKAEDVKEGVEQDPEAEVAIGCPLCGAMFDLRTGAIAGEQPKGLAQMLVSKVVSQTPVESIKTYQAQALSTGAVIVRV 793
            PS+SS T    M+   RR  R      K+  A+ GP+   S  G   + + +VLD   E+    GS K V G  K DDKF  L     G   A+   CGRCKFP++ GKV        +ED    VE D +  + I CPLC   F L +G + G Q   + Q + +   S+     +KTY A A + G+V  ++
Sbjct:   60 PSTSSLTRNAQMLG--RRHGRVLTQAKKRGGAASGPQ---SVTGESLRGFTKVLDVGSELADAEGSQKAV-GPLK-DDKFLLLIRRKEGRVSAIDANCGRCKFPLLKGKV--------SED--PSVEDDEDKGI-ITCPLCAVRFSLASGLVTGAQADNVLQRVSASFFSKQIASGLKTYAAAAGTDGSVYAKL 235
[Close]
BLAST of mRNA_P-littoralis_Contig205.4.1 vs. uniprot
Match: A0A7S2USE0_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USE0_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 4.830e-9
Identity = 43/147 (29.25%), Postives = 66/147 (44.90%), Query Frame = 2 
Query:  368 WLQVLDKAPEMEI--GSVKVVS-GKYKGDDKFFTLATHGGNFFAVSEACGRCKFPMINGKVKLLKDGGKAEDVKEGVEQDPEAEVAIGCPLCGAMFDLRTGAIAGE---QPKGLAQMLVSKVVSQTPVESIKTYQAQALSTGAVIVR 790
            W+QV +   +M+   G+ K V      G      +  H G   +    CGRC+FP+INGK+                  D + E  I CPLCG  F L +G    E   Q KGL Q ++   + +T  ++IK Y+ +  + G V ++
Sbjct:   93 WIQVFESDEDMDSKEGATKAVEITDPLGKPAPVLMIRHEGKISSTEIGCGRCQFPLINGKI-----------------MDQDGEPHIECPLCGCGFSLSSGVYKEEMDGQSKGLMQNMMGGFMGKTTPKNIKVYRTEENNVGEVYIK 222
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig205.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G2Z6_ECTSI5.480e-8466.23Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
W7TAQ7_9STRA7.090e-1034.02Uncharacterized protein n=2 Tax=Nannochloropsis ga... [more]
A0A7S2USE0_9STRA4.830e-929.25Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig205contigP-littoralis_Contig205:32749..42885 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1663
Hectar predicted targeting categorychloroplast
Exons6
Ec32 ortholog descriptionRieske [2Fe-2S] iron-sulphur domain
Ec32 orthologEc-09_004280.1
Cds size750
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig205.4.1prot_P-littoralis_Contig205.4.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig205 33613..42836 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790000.3688211-UTR-P-littoralis_Contig205:32748..336121680790000.3688211-UTR-P-littoralis_Contig205:32748..33612Pylaiella littoralis U1_48UTRP-littoralis_Contig205 32749..33612 -
1680790000.4429786-UTR-P-littoralis_Contig205:42836..428851680790000.4429786-UTR-P-littoralis_Contig205:42836..42885Pylaiella littoralis U1_48UTRP-littoralis_Contig205 42837..42885 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790000.382428-CDS-P-littoralis_Contig205:33612..337521680790000.382428-CDS-P-littoralis_Contig205:33612..33752Pylaiella littoralis U1_48CDSP-littoralis_Contig205 33613..33752 -
1680790000.3928118-CDS-P-littoralis_Contig205:35067..352001680790000.3928118-CDS-P-littoralis_Contig205:35067..35200Pylaiella littoralis U1_48CDSP-littoralis_Contig205 35068..35200 -
1680790000.4019468-CDS-P-littoralis_Contig205:35479..355871680790000.4019468-CDS-P-littoralis_Contig205:35479..35587Pylaiella littoralis U1_48CDSP-littoralis_Contig205 35480..35587 -
1680790000.409894-CDS-P-littoralis_Contig205:36328..363701680790000.409894-CDS-P-littoralis_Contig205:36328..36370Pylaiella littoralis U1_48CDSP-littoralis_Contig205 36329..36370 -
1680790000.4231484-CDS-P-littoralis_Contig205:37152..373511680790000.4231484-CDS-P-littoralis_Contig205:37152..37351Pylaiella littoralis U1_48CDSP-littoralis_Contig205 37153..37351 -
1680790000.4331746-CDS-P-littoralis_Contig205:42708..428361680790000.4331746-CDS-P-littoralis_Contig205:42708..42836Pylaiella littoralis U1_48CDSP-littoralis_Contig205 42709..42836 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig205.4.1

>prot_P-littoralis_Contig205.4.1 ID=prot_P-littoralis_Contig205.4.1|Name=mRNA_P-littoralis_Contig205.4.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=250bp
MLLSANLSNMSSSSRMLALVSVVAVLAQLVDAFAFSSSTLCQTFADASRQ
GRATRSWRPSSSSRTTALTMMAKNRRERRYADGKGKKSSASKGPKRQPSG
PGSDAKWLQVLDKAPEMEIGSVKVVSGKYKGDDKFFTLATHGGNFFAVSE
ACGRCKFPMINGKVKLLKDGGKAEDVKEGVEQDPEAEVAIGCPLCGAMFD
LRTGAIAGEQPKGLAQMLVSKVVSQTPVESIKTYQAQALSTGAVIVRVD*
back to top

mRNA from alignment at P-littoralis_Contig205:32749..42885-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig205.4.1 ID=mRNA_P-littoralis_Contig205.4.1|Name=mRNA_P-littoralis_Contig205.4.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=10137bp|location=Sequence derived from alignment at P-littoralis_Contig205:32749..42885- (Pylaiella littoralis U1_48)
GCGGTGAAGTGCTGGATCGATACTCGTGCAGGAAAAGAACAACACCTATA
TGTTGCTATCTGCCAACTTATCAAATATGTCTTCGAGCTCGCGGATGTTA
GCCCTTGTGTCCGTGGTGGCTGTGTTAGCGCAGTTGGTGGACGCTTTCGC
CTTCAGCTCGTCTACGCTTTGCCAAACGTGAGTGGTATGCGGTATCTCTC
TTGTCTGATATCATGAGTACTTTGTATGCGATGATGCTGGTGACATCATC
GTCACCTGACGCAACCCTGCATCACGATAGTCAGCGCACGCTGGTGCCGT
TGGCGTGATCCTATGGTATTTGTTCGTTGTCATGACAGGAGCTTCGTGAT
AGAGTTGTGAAACACTTCGTGATTCTTGCTTTGTCTTTGGGCGTGACGCG
ATTGGTGTCGGTGTTTTCCACCTGTTTTCGACATACTGTATTCGATACTG
TTCTGCATGATATGCTGTGCTCGTATGCGTTCTGTCATGTTTCAAAATCT
GACGCTTGATGCCGTCCGTATCATATCTACCTTCATCCTCCGCTCCTCTC
GATTTCGACATGCGCAAAAGTGTTACTGCGTGCAGAAGCATCAGGTTCAA
TGCTGTTGTCATAGGTGTCTCTCATTCTCCAACGAACGACATTCTTCTCA
ACAACACCCGTCGAAAGAACGCGGCCGCGCGCCGCAGCTCGTCCGTTCCC
ATGGTATCATATCATATACCACTTCGTACGAAGTACTCCGGAGTACTTCG
TGTATGATATCATGAAGCATTTGTATCCACCACCGGACACACGCTCCATA
TTTTTGGACCCACCTTCCAAAGCCCGATTACTTCACAACAATGATGATGC
GAACATCACACAACGATACGTACGGAGCGCTCTCGCCGAAACGATGCATG
ACTCCAACCCCAAACGCCCTGTTCGATACGAGAGGTACCGGTACTCGTCT
TTTGAGGATTCCGTCCTGGCGGGGTGTGGTATATTTAGCGACGGTATGTC
ATAATACATACACGGCGCCCCGAGGCGTCTTCACACCCGGAACCTGGCAG
TTTTGTTTTGCTATTGGCCCCCATATAGTGTATACCAGGTGGAAAATTTA
TCATATCAGAGTAGCATAAAGTAGGTGTTTGCAAGCGGGGTCTTCACATA
CAATCCTTCCGATGCCGTTCTGGCGTTCCCATTCCACAGGCCGATGCCAC
TGATTGTCAACCCTTTACTTGGACTTTTTGAAGGTCACCCTAGGATCAGC
ACAAAAAGTAGAAAGGCTTGGAAAGGGGCGCCATTTCGCTAAAAAAACTC
ATCTCTAGATCCTTTATAATAAAGCAAAGGATCTCGTATAAATGCAGCTT
TTTTTTAGGAGAACAAAAAATCAACAGGAGAGCGTTTTTTGAAGAGCCTC
TTGGGCGGGAGGCTGAGATTTTAACCTCCGCTTAATCCAAATTTTTCTAT
TGTTCTTACTGCCCATGTTAGCCCCGTGAACCAGCTACATTCCCGTCGTC
ACGTTTGCGAATCGGGGATACGCACGAGGAGAAACGCCAGCTTCGTATCA
TCGCACACAGTAGATCTCCCGGTGCGGTGCAATTTCGGGTCACTGCATTC
ATCAGTAGATGCGGATCCACAAGTTCCCAAGAATGCCTCTTGAGTCGTTT
CTAGCCTGCTGCTGCTGTAGAGGCACGAGACGCCGCTCACCCACCACACC
TGGAGGCTGTGGTAATTTCGAGCAGTGTGGTTTCTTGTGGCGAGTTTGCG
CTGCCCTCAACTGAAGTAATTTTTTCTTGGATTTTCACCGATTTCTCTAC
CCGGGCAGACGATGCTCAAAACGTTGATTTCGATCACCTCGATCTCGAGC
TTCGAGGCCTTTACTGAGAACGAGCATAGTTTGTACCCACTTAGGAGTTC
AAACAAAGGCGAGTTCTGTAAAAAGATCGGAAGGTTTGTGTCTCCTAACG
CAAACGGGGGAGAGAATGGGATGTGGAGCAAACAGGAGTCAGGGGGGGGG
GCACCGCCAATGATTTTTTATGTACAGTAAGTCGAAAGGAAATTTTTGAT
CGTTGGGCCCAGAATTGCCACAACGGAACCTCGAGATCCTCGAGATAACG
GGACGGCGTCCCCCGCAGCGTTACCTTAACATCCCCCTGAACGAGTTGTG
TCTTGGGAATACGCTGCACATGTGGGGTCCTAAAAGTAGAAAAAATGAAC
CTTTCATTTTTCGCCGTCAAAGTGGGGCATCGTACGGAGCCCCCGACCTT
GACTTTTCTCTGAGAAGTCGTTTCGTTTCATGTCAACTTTCTGGTAGGCC
GGCTGTTGTTCTGATCCCGTCTCCTGCAAACGTGTAAAGTGAAGCACATC
CAACAAGCCGCACACCCTCTGAGCTTCAGCCGATTTGGTCAATTCTACGA
GTGCGCAACTTTGATCTTGCGAGTTTTTTTTGACACGAAATGCTCATATT
TCTGGCGTTGATACGAGCTGGGCCGGCCAAGAATCCCATTTTCAGTTAGG
TGGTCATATCTTTTGAACGATTCTGACTCAAGGAAAGTTGAACATATCCT
CGTAGCCAGCTAGACAAGGTCGTCATGCGCAGCCAACTAGCTTTGGAATC
CGCCATGTCGGTACCGAAAACATTTCCGTGCCACTGGTGTCTTGTCTGGA
CAATTTTTTGTGTCGTTTTTTATGCTGCTCGTTAAAAAGAACTATGCCAT
AAAAGTAGGTAGAATCCGTCAAATTTTGGTGCCAATTCGCCCACGCTGAC
CTCAGTTTTTCGATTTAGGACCTGGAAATTTGACACACGATTTAAGAGGG
GATTCCGAAGACATTCAAAAAATAAACTTTTCAATTTTGTTTTTTTGCCG
ACTTTCGAGCAGCCGAAAGATAGGTCGGCGAATTCTATTTGTTTTCGAGG
GGGGATTTCTTGAATGTTCCGGTGAGTCTCTTTAAAATCACGTGTCAAAA
TTTCAGGTCCTAACTCCAAAGCTGAGCACAGCATAACGATATTGGCGAAT
CCCTGAACTCTTGGCCGACCCAGCTCGTAGTTTCCGAGGTATTATACTGT
ATAGACGTATCAATGTTCTTGTTTCAAATGTTCAGCCTGGTAATCGCTGG
GGCTTAAACATTGTGCTTATCGATTTGAGGCAACTGTTGCAGGCCCTTCG
TTTGCACTGTCGAGCGGATCCCGAATTATGCAAACCTTTGTCAGTCACGA
TTTCCGCCGAGCTACGCGCCCTTCGAGTTTCAGCTGATTTGGTCTCCTCT
ACGAGTGCGCAAGCTCGGCGCGACGTGTGTCTCCCGAAAGCTAAAAATAA
GCTGTTGAAGCTCAGTAAAACGGCTAGCTTTCAGTTTCGATGGCGCAGCA
TTCTTGCAGTTTGAAGCAAAACCATAGCATGTACAGTAGACGAAGGTTGA
ATACGACCCTCCTGAGGCTTGTTGTTGATATCCCAGCTGGCCGCGGCTCG
TGTACGGAGCACCACCGGTGACAATGGCCACGACCTCAAATTGTATCGGC
AGCACAAATTTACAAATATGAGAGGGGCTCCGAGGTTCGTGTGGTATCAT
ATGATCTTACGTGTGTGGTAAAAAAAAAAATTGCTTTACCAACGAATGCG
GCCTCGACGCCGTCCCGGTACCCCGGGGCTCCGCGACGACCCTATTGGCG
CCAGCAGGATGACTGTTTTTTCCATACATTTCATTCGAACTTCTGGATAG
AAAGTCTGCAGCGTTGCCCCCCCTGCCTGCTTTACCGGTACGCTCCGTAT
CCTCTCCTCCCCCGTTGAAGCCTTCGGAGACATAAAATCTCGATGAGTAC
AGGTATCGCGGTAAAGAAATCACAGCTCAGCTTAAATTTCTCCATGGACA
CAAACAAGACGCTTTTTCAGGAGATACCGCCAGGGCACATGTCACGTGCT
GAAAAACACAACAATTTATCGTAGCCTTTCGGAGAACAAATATGTTTTCT
AGCCTTTCGAACAACAACATTTCAAACAACAGGACTCTTTGAAGCACCCG
ATCTTTCACGTGATCACCACCGATCAGCAGTAGGTGGCTGAAATTAATCC
TCCGAAAATAAGGCTCTTGCTGTATGGCCGATTGCTGGTTGCCAATTTGA
CAATCATTTTGCACTGTCGTAACGGTCTCGGTCTTTCCTTCGTCATTCTC
GAACGAATGAATCCACATTTTGTGCTGAAGCCATGCCTCGCGAACTGTGT
ACATGGTCGTTACCCTGTGGTGTTCATGTGAGACCGCGAGGCATCGATAG
GCTGGCGAATTTGTTTTTGCAGGCATCGATGACGTGTGAAGAAAAGGGTT
GAAAATCGATACAGCTACCAGGAGGTGGTGGTGGTGATTCCTTCTTTTTC
CACACGTCATCGATTCCTGCAAACGATCTTCCTCAGCCGGTCGATGCCCC
CGCGGCTTCGGATAAAACCATACACACACCGCGCGAGGCACGACTTTAGC
ACTGCTGTGGCTTCATTTGTTCGAGAGAGATGGGCAAAATACCGGACTGG
TATAACATGGCGTCAAAAAATAACTATTTTTTTCATTTGGAGCTATCGGG
AAGAGTTCTTCGAAAAGCCGGTATGTGGAAAGGGTGTTCCTGATCGCATG
TGGTGCACGCACGGTCTCGGACCGATTTCCAAAAAGCCCATTGGAGATAA
CGATGTTCAACACATGAAATGTAACCCACAGCGCGAGGTCGAGGTGCTCA
ACGATGTAGGTTTGTAGTGATACGGCATCTGCGACAACTTTTGGACTTTT
GCAAGCAGTGAAAGGTTTTTTCGATGTCAACGCTGTTCGGAGTAGCATCT
TTCACATAGAAACTGATGGCAATTTCCAGAAGATGACTGCGCTGAAGTCG
CGGACAGCGCAAGCTCCTCACAAGCAACCACACTACTTGAAATTGACGTA
GCCTACCGACGTGGTGCGTGAGTGGCTCATCACGCCTTGACAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGGCAGTTCGAAACGATACTACATGC
GTTCTTGTGGACCGTATCACGATGCATGCAGTTGCCCGAAATCTGCTAGG
CATTTGCGGGATGCCATATCGTTTTCTGCGAAGTGTATCCCCAATAAACA
GACGAACTGGACGTAAATGTAGGGCGTAGCTGTTTGCCGTGCGATTTTCC
AAGCCATGAAGGCATACTGGTGGAGGTATAGGATTCCGCGTAGTTTGAAA
ACGCTATTCACGGTCCGAAGAGCTCCTAAAAGGCCCTTGCCTCTTGATCT
TTGGACCCCTCAAAAGAAAGCTGCACTTGTGCAAATCACAGACTGTATGT
TCAACTGACTCTTTTTTTTTGTCGAAATGTTCAGTTCCAAACCCTTTTGC
CCTTTTGTTCTGAACCCAGCGTGGCCTCAAGCATGCGACCCCTCTTTTCC
CAACGCTCTGCAAAAAGCTCATGCATTTGGGAAGTATTTCCAAGAACGAT
ACGCCAATGCTGTCATATTTTCATGCTCATGTTTTAGTTTTGTTCTGCTA
AAAACACCCACCTGGGGTTGCCTGAAACGAATAGGTTTGCCGATGCCAGC
AGACAAGGTCGTGCTACGAGGTCGTGGCGACCATCGTCCTCTTCCAGGAC
GACGGCGTTGACGATGATGGCCAAAAACCGGCGAGAACGGCGATACGCAG
ACGGAAAGGGGAAAAAGTCCTCGGCTTCCAAGGGACCAAAAAGGCAGCCG
TCAGGACCTGGTTCCGACGCCAAGTGGCTTCAGGTTGGTGCTTGGTCGTC
TTGTTGTTTGTTGCTTGTTGCTGTTGTTGTCGTTATCGTTATCGTTGTCG
TTGTCATCGTCGTTGGCTACATTATGGTAGTTGCTCTTGGTGGTGGTGGT
GGTGGTTTTGGTGTCGTTGTTGTCAAAAATGACATTAAAACAATCGTTTC
CCAAAACAACTGCGTTCGTTGTTTTGATTAAATTTCTCGCAGCAACGTGT
GATGGACGTCCTGCTGAATCGAACGGTCAAATCGACGTAGTTGGTGTCCG
ACGACTCTCGTCACCATGAACTGCGGTAATTTATGCGGAGGGATTGGTCA
AGGTGATGCGTCCTCGCGCACCCACTAACTTCGAGCAAAAAACTTCGCAC
AAAGCGGCGCCCGGCACAAGTCGTCCCGCCGTTGCCCCCACGTGCTAAGC
ATACGATTACACGGAGCGGGATGGTGCGTGTACGTACTTGCAGAGGGTGA
GGTTGAATCCCTCCGATATCGCACCCCCTCGTTTTATCCCAACATCTCAA
AGCCACCCACGTGGTGAGAATTCGAGGTCACGGTCAAGTCGGTGGGTGCG
TGAGGGAGGACGCATCACCCTGAACCGCCCCCGCCGCATAAATCACGAGA
CGTGATCCCTCCCACCACGCGACCTGGATAACATCTGCGAAAAATATTAA
GTTTCCGTGTCCGTCAAGTGCATCAGAAATCACCGCGAGCTGGCCAATGT
AATTCCGCTCTGTCCGACCCTGTGCCTGGAAAGCTAAACCAAAGTCGCCC
GACTGTTCCGCTCAGGTTCTTGACAAGGCTCCGGAGATGGAGATAGGCAG
TGTAAAGGTGAGGACCCACTCGAGTTTAATTCCAGGCACTGCTGTATTAA
CTACTTGCGATATACCCCACACCTCTTACTCCAGGTATTACTGTCCGAAA
CTATAAAAGTGAAAACCCACTGCGCTCTAATTCTAAGCAGCTTTGCTGGC
GCTTGAATCAAGTGATGATGATAATTTCATATAGTGCATTAACCTCCTCG
CCCATGCATATTCTCAGTATATGCTAAAAAGAAGGCAAGTAATTTTTTTT
TAATCCAACTGTAGCACTTTCGTGATATTTGACCCCGAGCAAGAACAAGC
TCGTGCGCTAACACGTACCAACCTCACAACGCGGCAGTAGTGGAGGATAT
ATGATTTGAATCTATGTGTGTAGGATAGATTATATTAATCTATGGTGCTT
CCCCCACCCACCCTCACTCGCAAGGCATCGACCCCTCATATTTGTCCCTT
GCGGCCTACCTGTCCGCTTATTCTACAACCACGCCGCTTGGTCACCAACA
CACGCAACTCCGTCATCATCAGCCTCTCAGCTAAACCCCTCATGCTGTCT
ATCTATCTGTATGTCTGGCTGTCTGGCTTGTATGTCTGCCTACGTGTCTC
CATGTCTATCTGTCTGCCCGTCGCCTGTCTTTCCTCCTCCCCGTCTCTCT
CCCTCTGTCTCCCCCCCCCCCCCCCTCTCTTTTTCCTCCCCATCCTTGCC
GGTGGCGACGTGCTCTCCCATACCATACCAAACCCAACCGTGGTGAAGGT
CGTGTCCGGAAAGTACAAGGGCGACGACAAGTTTTTCACCCTCGCGACGC
ACGGCGGCAACTTCTTCGCGGTCAGCGAAGCCTGCGGCCGGTGCAAGTTC
CCCATGGTGAGCCTCTCCCTTTGGTCGGGTGCATCGAACATCACTACTGT
AAGCCTGTAGGAGTGCGGGTGTATCGAACGTATCGCACCGGTGACACGTG
CTGTAGGGCGGTGCTGCAACAAGATGGGAAAGAAGTGGCTGTCGGTGTGT
TTGCGCTAGAGGTGGCGCTGGTGTGTTACTACCACTGTCGGCGATGACGG
CGTGAAAACAGCAAGCGTGTTGCCGTTTCCATGACGGGGATACTGACGTC
GCATCATGCGTGTTGCGGGGACGGTGATGAGGCAGATTAACGGCAAGGTG
AAGCTCTTGAAGGACGGGGGAAAGGCGGAGGACGTGAAGGAGGGGGTGGA
GCAAGACCCCGAGGCGGAGGTTGCCATTGGCTGCCCCCTGTGCGGAGCAA
TGTTCGATTTGAGAACAGGTGAGAAGAGTTGCGGTTTATCTTTACACAGC
AGTAGTCTCATGTACGATAGTTTGCGTTCTGTAGACCGCTTCTGTTTGTG
TACTGTGTCCTGAATACCTGTTCATTAATGTAGGCGTTTCAAAAGTATGA
AAACAGATAAAAATGTTGATACATCCAGTTTTTTATCCGTTACGGCAGCC
TCAAATTCGAGTGATTGTCGAAGGATGGGTATCGTTGTGGACAGCGTGCT
GTCTGGAGCGAGGCCCCTGCTCGTTGCCGCGTGTCTGAGTGGGAAGTCGT
GCTTTAGCACTAGTCTTTATCCTCCTTGTTTAGTCCTTTTTAGTCCTTCG
TCTTCTGGCTCCCGCTTTTCTTTTGGGCTTTCGGTGTCTTTCTCTTGTTC
TTGGTGTGCCTTATGCTGGGCTCTGCGCTCTGGAATGTCTTGGTCGGTCC
GGGCTCTGAGCTGGTTGGTAAAGCTGCTGTTTGGTTGACCTTGGTTTTGT
TTGTTTCCAATTTCTGATTTTTCGGCCCAGTATTTCTGTTTTTGTAACGT
TGGCCACCACAGAATGCACCCCGACGGTACGTTCTCTGATTTTGTTTGGG
TGTGGCCATCGTTTATTGTTTATTTCCTTTATTTTTATTTTTGCTCCTAG
CACGAGTTGTGGCTGGTTTGCGACCACGGGCTAGACTACGGTGGTGAGCC
AATGTGAGAATCAATAACAACAACTCGTACGTCCAGGCGTGTAAGGGTGT
TTCATCTCAGTCTTGTCCACACAACTGCGCTGGTGTGACGGAATACCCCC
CCCCCCCAATGCACCACGCCCCATGCGTATATCATGTGATTCCCCCTTCA
TACAGCTCACACGTGAAGCTTTTTGAGTATGCTAACACTCTGCATCGTAA
ACTGCTTAATATGATACCCACCCATACCCAGCTCTTGCCCAGCACGGGTC
GACGTTGCTGGACTTTGTAGGGGGCGGCACATACCCAAGCACACCCCAGC
AGGAGCTTTCCCGCGTGCCTGTTTCGCGTCCTGGTGTAGTTACATTCGGG
CAGAGTTCCCGTTAATTTGCCAGACTCGGGGAATTGTCTCACGATACCAC
TTCGACAGCTCCTCGCTTGTTTGTTGGGACCTTCTCCAAGAAAGGTTGGC
ACCGCCACAAATCAAGTATTGGCCTTGATTTCACGAGCGGAAATGCGTTT
TCTGTACCACGTTGTACGAATATTCTTTTCGAAATGGGAGCTCCTGAACG
AAAGTCGAACTGAAGGGGTTGCCTGTTTCTGCGTTCCTAACAGCGAGCCT
TGCCGTACTCACGCTTTCAAATATCTGCTGCAGGTGCCATCGCCGGAGAG
CAGCCCAAGGGGCTGGCGCAGATGTTGGTCTCCAAGGTCGTTTCGCAGAC
TCCCGTCGAGAGCATCAAGACGTATCAGGCGCAAGCGCTGTCAACGGGAG
CTGTCATCGTACGTGTCGACTAGATTGTACACGCGGGGGAAAAGGGAGAC
TTCAGTAGGCGTTTTTTTCGTGTCTGACGCATATGACGCCCCCTGTGCTC
GCGGCTGTCTCCGTATATAGAGTGGTAGCTGTCCTCGCAGAGAGAGTAGG
TCAAGGAGGCACTCATGCATCAACCGCAGTCTCTTCTCCGTTTGATATAT
TGACTAGGCTGTCTATGGTCCGTGTGTATGACTGATCCGTCTTCTCGTCG
TAGTGGATCTATCTTGACGAAGCTCGTCGGAGAGGAGCTCCTACTACGCA
CCACGCACAGGCCGCTCCGGAGAATTGAGTGCAGTACGAGTACATAAAAA
CAAGCACGTCAGGGTGTGCAGGCTTGCTGCACGTATGTACGCGTTGATGA
ACTACTAGATAGACCCGTTGAGAAGTTGAAGTATAGAGGATAGTGGAGTC
GTGTTTGGGCGCATTTTGGTTGTGTTCAGTGATGTCGGGGTCCACACAGG
GAACAAACGCTTTAGAATTGATACTTGAGTACATAATTTCATCTAAAAAA
CATAACGACGAAAACATGACACGCGCCAAGCATGAACACGCGTTGTGCTG
AGGAGTAAAGTGTGCGTGTTTTTCGTGTGTGTTCGTCCCATTTTACTCTG
GCCACCAGTCTACACCTTTCGGTGTGAGGTGGATGCAACAGCCGGTTACA
CAAAAGGAAGGTCACAAACGAGCCTTTTATTTTGAACTTCGTACTCCGTA
TTTGCTATTATTGCCCATACCTTTCCTCCCGTGGGTACTTGATTGCCTTT
GGCGTTAGGTGCGTGCTATTTTGGGCTTTGCGAGGATTGAGTCAAATTTG
CACTCGCTCGTACAGCCGAGCCAATGCTCAACTGCCG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig205:32749..42885-

>mRNA_P-littoralis_Contig205.4.1 ID=mRNA_P-littoralis_Contig205.4.1|Name=mRNA_P-littoralis_Contig205.4.1|organism=Pylaiella littoralis U1_48|type=CDS|length=750bp|location=Sequence derived from alignment at P-littoralis_Contig205:32749..42885- (Pylaiella littoralis U1_48)
ATGTTGCTATCTGCCAACTTATCAAATATGTCTTCGAGCTCGCGGATGTT
AGCCCTTGTGTCCGTGGTGGCTGTGTTAGCGCAGTTGGTGGACGCTTTCG
CCTTCAGCTCGTCTACGCTTTGCCAAACGTTTGCCGATGCCAGCAGACAA
GGTCGTGCTACGAGGTCGTGGCGACCATCGTCCTCTTCCAGGACGACGGC
GTTGACGATGATGGCCAAAAACCGGCGAGAACGGCGATACGCAGACGGAA
AGGGGAAAAAGTCCTCGGCTTCCAAGGGACCAAAAAGGCAGCCGTCAGGA
CCTGGTTCCGACGCCAAGTGGCTTCAGGTTCTTGACAAGGCTCCGGAGAT
GGAGATAGGCAGTGTAAAGGTCGTGTCCGGAAAGTACAAGGGCGACGACA
AGTTTTTCACCCTCGCGACGCACGGCGGCAACTTCTTCGCGGTCAGCGAA
GCCTGCGGCCGGTGCAAGTTCCCCATGATTAACGGCAAGGTGAAGCTCTT
GAAGGACGGGGGAAAGGCGGAGGACGTGAAGGAGGGGGTGGAGCAAGACC
CCGAGGCGGAGGTTGCCATTGGCTGCCCCCTGTGCGGAGCAATGTTCGAT
TTGAGAACAGGTGCCATCGCCGGAGAGCAGCCCAAGGGGCTGGCGCAGAT
GTTGGTCTCCAAGGTCGTTTCGCAGACTCCCGTCGAGAGCATCAAGACGT
ATCAGGCGCAAGCGCTGTCAACGGGAGCTGTCATCGTACGTGTCGACTAG
back to top