mRNA_P-littoralis_Contig204.51.3 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.51.3
Unique NamemRNA_P-littoralis_Contig204.51.3
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: D7FN41_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN41_ECTSI)

HSP 1 Score: 462 bits (1189), Expect = 1.120e-150
Identity = 264/334 (79.04%), Postives = 272/334 (81.44%), Query Frame = 2 
Query:  941 GSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGS-EDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEGASNRNKNQNFGGGLQAGQ-WGMMGQQQ-YPAQGQGAGQWGAAAG-AQAQAFAGQGQWGQQQQFGAAQGVQGGYXXXXXXXXXXXXXXXXXXXXXXXXXXQAAGQAAGGAGAWGGQQ 1930
            GSVNPGAFDEIHRAC+DIPVNKKIFVRGLPWET DQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFK MDGAHAALENPEKMIDGRVSLCNLAALRSSQPLP R  G  QGG MQG A GM+  AVGGS EDVSARKIFVRGLSWDTTTESLRTMFSQ+GELED VVTTDRASGKSKGYGF+T+RFAA+AAAAVAEPEKQLDGRLTHCNIAAEGASNR KNQN+GG  QAGQ WGMMGQQQ YPAQGQG+GQWG   G      F GQ QWGQQQQFGA QGVQ  Y                            A QAAGGAGAWGGQQ
Sbjct:  142 GSVNPGAFDEIHRACDDIPVNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPARAGGGMQGGAMQGGAGGMMXXAVGGSGEDVSARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRFAANAAAAVAEPEKQLDGRLTHCNIAAEGASNR-KNQNYGG-PQAGQHWGMMGQQQQYPAQGQGSGQWGVGGGDXXXXGFGGQXQWGQQQQFGAPQGVQQAYGNGAYAGGAAAYGTNGGGAYQGQ-----ATQAAGGAGAWGGQQ 468
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BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: A0A6H5KMW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMW4_9PHAE)

HSP 1 Score: 419 bits (1077), Expect = 1.660e-135
Identity = 251/341 (73.61%), Postives = 263/341 (77.13%), Query Frame = 2 
Query:  917 ATSSAVFSGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGS-EDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEGASNRNKNQNFGGGLQAGQ-WGMMGQQQ-YPAQGQGAGQWGAAAGAQAQAFAGQGQWGQQQQFGAAQGVQGGYXXXXXXXXXXXXXXXXXXXXXXXXXXQAAGQAAGGAGAWGGQQ 1930
            ++SS   +GSVNPGAFDEIHRAC+DIPVNKKIFVRGLPWET DQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFK MDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQR  G  QGG MQG A       VGGS ED+SARKIFVRGLSWDTTTESLRTMFSQ+GELED VVTTDRASGKSKGYGF+T+R+A +AAAAVAEPEKQLDGRLTHCNIAAEGAS R KNQN+GG  QAGQ WGMMGQQQ YPAQGQG+GQWG                         QGVQ  Y     XXXXXX                   QAAGGAGAWGGQQ
Sbjct:   34 SSSSLTCTGSVNPGAFDEIHRACDDIPVNKKIFVRGLPWETNDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKSMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRAGGGMQGGVMQGGAGXXXXXXVGGSGEDISARKIFVRGLSWDTTTESLRTMFSQFGELEDCVVTTDRASGKSKGYGFVTFRYAVNAAAAVAEPEKQLDGRLTHCNIAAEGASGR-KNQNYGG-PQAGQHWGMMGQQQQYPAQGQGSGQWGVGGDXXXXXXXXXXXXXXXXXXXXPQGVQQAYGNGAYXXXXXXYGTNGGAYQGQTT------QAAGGAGAWGGQQ 366
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BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: A0A388KX58_CHABU (Uncharacterized protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KX58_CHABU)

HSP 1 Score: 191 bits (485), Expect = 4.890e-50
Identity = 99/225 (44.00%), Postives = 140/225 (62.22%), Query Frame = 2 
Query:  932 VFSGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGSE-DVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEGASNR 1603
            V +G+   G  DEI    +  P ++K+FVRGL WETT Q+LR  F ++GEI E  V+ DK T KS+G+GF+TFK MD A  AL  P K IDGR+++CNLAA                         G LGG+ GG   D S RK+++ GLS++T+TE+L  +F Q+GE+E+  V  D+A+GKS+G+GF+TY+    A  A++EP + +DGR  HC +AAEG + +
Sbjct:   50 VNAGTRYSGVADEIREVASKDPAHRKLFVRGLAWETTSQALRDAFAEFGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALREPSKKIDGRITVCNLAA------------------------AGTLGGSQGGGGGDQSQRKLYIGGLSYETSTETLLNIFGQFGEIEEGSVAYDKATGKSRGFGFVTYKTVEGANRALSEPTRTIDGRTVHCKLAAEGQAQK 250
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BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: D8QPR6_SELML (Uncharacterized protein n=1 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QPR6_SELML)

HSP 1 Score: 179 bits (454), Expect = 5.340e-46
Identity = 104/258 (40.31%), Postives = 148/258 (57.36%), Query Frame = 2 
Query:  866 RVRVPLSCVDFGAILAGATSSAVFSGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGSEDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEG----ASNRNKNQNFGG 1627
            R+  PLS     A+L  A       GS  P   D+I    +  P ++K+FVRGL WETT Q+LR  F+ YGEI E  V+ DK T KS+G+GF+TFK MD A  AL+ P K IDGR+++CNLA++ SS                          A  GS D + RK+++ GLS++T+ E+L  +FSQYGE+E+  V  D+ + KS+G+ FITY+   +A  A+ +P K ++GR     +AAEG    A +++  QN GG
Sbjct:   32 RLLEPLSKEQLVALLIDA-------GSQYPAVADDIRDVASKDPAHRKLFVRGLAWETTSQALRDAFQHYGEIEEGAVITDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASVGSS--------------------------AGAGSADQAQRKLYIGGLSYETSNETLLNIFSQYGEIEEGAVAYDKNTNKSRGFAFITYKSVEAARKAIDDPNKTIEGRHVIVKLAAEGQKEKAVSQSSAQNQGG 256
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BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: A0A1Y1I415_KLENI (RNA binding domain protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1I415_KLENI)

HSP 1 Score: 181 bits (458), Expect = 1.200e-45
Identity = 99/232 (42.67%), Postives = 140/232 (60.34%), Query Frame = 2 
Query:  944 SVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGSEDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEGASNRNKNQNFGGGLQA 1639
            S +P   D++  A +  P  +K+FVRGLPWETT + L A +E++G+I EA V++DK++ KSKG+GFVTF+ +D A  AL NP+K I  R    NLAAL SS         ATQ                  + DVS RK++V GL++DTT E+L  +F ++GE+E+  + T+R +GKS+G+ F+T+R A  A AA AEP K +D R     +AAEG   R + Q    GLQ+
Sbjct:   49 SAHPDVLDDVRDAASKDPATRKLFVRGLPWETTTEELTAAYEEFGDIDEAAVIVDKISGKSKGFGFVTFRHIDSAQKALRNPKKQIRDRTVHANLAALGSS---------ATQR----------------DNNDVSQRKVYVGGLNYDTTNETLLEVFGKFGEIEEGSIATERTTGKSRGFAFVTFRTAEGAQAACAEPVKHIDTRNVQVKLAAEGRQQRQQEQTSASGLQS 255
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BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: A0A0C9QX59_9SPER (TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_1572 transcribed RNA sequence n=2 Tax=Araucariaceae TaxID=25664 RepID=A0A0C9QX59_9SPER)

HSP 1 Score: 177 bits (449), Expect = 4.440e-45
Identity = 94/217 (43.32%), Postives = 131/217 (60.37%), Query Frame = 2 
Query:  941 GSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGSEDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEG 1591
            GS+NP   +EI    +  P ++K+FVRGL WET+ Q+L A FEQYGEI E  V+MDK T KS+G+GFVTFK MD A  AL+ P K IDGR+++ NLAA  SS                            G + D++ RK+++ GLS+DT  E L  +FS+YGE+E+  V  D+ + KS+G+ F+T++   +A  A+ EP K +DGR     +AAEG
Sbjct:   55 GSLNPAIAEEIRDVASKDPAHRKLFVRGLAWETSSQTLCAAFEQYGEIEEGAVIMDKNTGKSRGFGFVTFKHMDSAQRALKEPSKTIDGRITISNLAASSSSP---------------------------GQNADLAQRKLYIGGLSYDTPNEKLLEVFSKYGEIEEGSVAYDKKTNKSRGFAFVTFKTVEAAKRALKEPNKNIDGRGVTVKLAAEG 244
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BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: D8RYI0_SELML (Uncharacterized protein n=3 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8RYI0_SELML)

HSP 1 Score: 175 bits (444), Expect = 7.900e-45
Identity = 95/242 (39.26%), Postives = 140/242 (57.85%), Query Frame = 2 
Query:  866 RVRVPLSCVDFGAILAGATSSAVFSGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGSEDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEG 1591
            R+  PLS     A+L  A       GS      D+I    +  P ++K+FVRGL WETT Q LR  FEQ+GEI E  V++DK T KS+G+GF+TFK MD A  AL+ P K IDGR+++CNLA++ +S                            GG+ D + RK+++ GLS++T+ E+L  +FS+YGE+E+  V  D+ + KS+G+ F+TY+   +A  A+ +P K ++GR     +AAEG
Sbjct:   41 RLLEPLSKEQLVALLTDA-------GSQYSAVADDIREVASKDPAHRKLFVRGLAWETTSQDLRDAFEQFGEIEEGAVIIDKATGKSRGFGFITFKHMDSAQRALKEPSKTIDGRITVCNLASVGTS--------------------------GSGGTNDQAQRKLYIGGLSYETSNETLLNIFSKYGEIEEGAVAYDKNTNKSRGFAFVTYKTVEAARNAIDDPNKTIEGRHVIVKLAAEG 249
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BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: A0A2K1L9M1_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1L9M1_PHYPA)

HSP 1 Score: 176 bits (447), Expect = 8.840e-45
Identity = 92/226 (40.71%), Postives = 138/226 (61.06%), Query Frame = 2 
Query:  938 SGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGSEDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEGASNRNKNQ 1615
            +GS+ P   D+I    +  PV++K+FVRGL WET+  +LR  FEQYGE+ EA V+ DK T KS+G+GF+TFK MD AH AL+ P K IDGR+++CNLA+  S+                 GT+          S D + RK+++ GLS+DTT+++L  +FSQYGE+E+  +  D+ + KS+G+ F+T++    A  A+ +  K ++GR     +AAEG   R + Q
Sbjct:   72 AGSLFPAVADDIRDIASKDPVHRKLFVRGLAWETSSMALREAFEQYGEVEEACVITDKGTGKSRGFGFITFKHMDSAHRALKEPSKNIDGRITVCNLASAGSTS----------------GTS----------STDQAQRKLYIGGLSYDTTSDTLLNIFSQYGEIEEGAIAYDKNTNKSRGFAFVTFKSIEGAKRAIEDSNKSIEGRHVTVKLAAEGQRERTQPQ 271
[Close]
BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: A0A2D4CE34_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CE34_PYTIN)

HSP 1 Score: 172 bits (437), Expect = 2.860e-43
Identity = 100/232 (43.10%), Postives = 136/232 (58.62%), Query Frame = 2 
Query:  968 EIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQP------LPQRGPGATQGGGMQGTAVGML---------------GGAVGGSEDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEGASN 1600
            EI  A +    ++K+FVRGL WETT + LR  F  +G++ EA V+ DK + KS+GYGFVTF  M GA  A+E     IDGRV+ CNLAA+R+ Q         Q+ P       +Q + +                  G    G  D S RK+FVRGL+WDT+ E+LR +F  +GEL +A V  +R +GKSKG+GF+TYR  ASA  A+ +P K +DGR  +CN+A+ G SN
Sbjct:   80 EIKAAASTDVAHRKVFVRGLAWETTSERLREAFSVFGDVDEAAVIYDKASGKSRGYGFVTFIDMHGAEQAVEKQTLEIDGRVTTCNLAAVRTQQSDEHASHSQQQTPSRNSQPQLQPSVMMXXXXXXXXXMASVSTPPGQGFRGGNDESERKLFVRGLAWDTSDETLRAVFQVFGELVEASVVRERKTGKSKGFGFVTYRHRASAELALQQPAKMIDGRQVNCNLASLGRSN 311
[Close]
BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Match: A0A2K1JG53_PHYPA (Uncharacterized protein n=2 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JG53_PHYPA)

HSP 1 Score: 171 bits (434), Expect = 4.740e-43
Identity = 92/226 (40.71%), Postives = 138/226 (61.06%), Query Frame = 2 
Query:  938 SGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRAVFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGRVSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGSEDVSARKIFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFAASAAAAVAEPEKQLDGRLTHCNIAAEGASNRNKNQ 1615
            +GS+ P   D+I  + +  PV++K+FVRGL WET+  +LR  FEQYGE+ EA V+ DK T KS+G+GFVTFK MD A  AL+ P K IDGR+++CNLA+                 GG  GT+          S D + RK+++ GLS+DTT+++L  +FSQ+GE+E+  +  D+ + KS+G+ F+T++    A  A+ +  K ++GR     +AAEG   R + Q
Sbjct:   72 AGSLFPAVADDIRDSASKDPVHRKLFVRGLAWETSSVALREAFEQYGEVEEACVITDKGTGKSRGFGFVTFKHMDSAQRALKEPSKNIDGRITVCNLASA----------------GGTSGTS----------SSDQAQRKLYIGGLSYDTTSDTLLNIFSQHGEIEEGAIAYDKNTNKSRGFAFVTFKTIDGAKRAMEDSNKIIEGRHVTVKLAAEGQRERTQPQ 271
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.51.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN41_ECTSI1.120e-15079.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMW4_9PHAE1.660e-13573.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A388KX58_CHABU4.890e-5044.00Uncharacterized protein n=1 Tax=Chara braunii TaxI... [more]
D8QPR6_SELML5.340e-4640.31Uncharacterized protein n=1 Tax=Selaginella moelle... [more]
A0A1Y1I415_KLENI1.200e-4542.67RNA binding domain protein n=1 Tax=Klebsormidium n... [more]
A0A0C9QX59_9SPER4.440e-4543.32TSA: Wollemia nobilis Ref_Wollemi_Transcript_1845_... [more]
D8RYI0_SELML7.900e-4539.26Uncharacterized protein n=3 Tax=Selaginella moelle... [more]
A0A2K1L9M1_PHYPA8.840e-4540.71Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]
A0A2D4CE34_PYTIN2.860e-4343.10Uncharacterized protein n=2 Tax=Pythium insidiosum... [more]
A0A2K1JG53_PHYPA4.740e-4340.71Uncharacterized protein n=2 Tax=Physcomitrium pate... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:143604..149272 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog88036.EFJ38326
PFAMsMyb_DNA-binding,RRM_1
Model size2791
Max annot lvl35493|Streptophyta
KEGG koko:K12741
KEGG Pathwayko03040,map03040
Hectar predicted targeting categorysignal peptide
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:1901360,GO:1901363
Exons8
Evalue5.51e-50
EggNOG OGsKOG0118@1|root,KOG0118@2759|Eukaryota,37M3X@33090|Viridiplantae,3GFRS@35493|Streptophyta
Ec32 ortholog descriptionUncharacterized protein
Ec32 orthologEc-06_008310.1
DescriptionUBP1-associated protein 2C-like
Cds size1182
COG categoryA
BRITEko00000,ko00001,ko03019,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.51.3prot_P-littoralis_Contig204.51.3Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 144364..148423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789998.0468488-UTR-P-littoralis_Contig204:143603..1443631680789998.0468488-UTR-P-littoralis_Contig204:143603..144363Pylaiella littoralis U1_48UTRP-littoralis_Contig204 143604..144363 +
1680789998.1519446-UTR-P-littoralis_Contig204:148423..1492721680789998.1519446-UTR-P-littoralis_Contig204:148423..149272Pylaiella littoralis U1_48UTRP-littoralis_Contig204 148424..149272 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789998.0591779-CDS-P-littoralis_Contig204:144363..1446001680789998.0591779-CDS-P-littoralis_Contig204:144363..144600Pylaiella littoralis U1_48CDSP-littoralis_Contig204 144364..144600 +
1680789998.0716078-CDS-P-littoralis_Contig204:145370..1454631680789998.0716078-CDS-P-littoralis_Contig204:145370..145463Pylaiella littoralis U1_48CDSP-littoralis_Contig204 145371..145463 +
1680789998.0819232-CDS-P-littoralis_Contig204:145839..1459531680789998.0819232-CDS-P-littoralis_Contig204:145839..145953Pylaiella littoralis U1_48CDSP-littoralis_Contig204 145840..145953 +
1680789998.0951626-CDS-P-littoralis_Contig204:146439..1466181680789998.0951626-CDS-P-littoralis_Contig204:146439..146618Pylaiella littoralis U1_48CDSP-littoralis_Contig204 146440..146618 +
1680789998.1081216-CDS-P-littoralis_Contig204:146775..1469471680789998.1081216-CDS-P-littoralis_Contig204:146775..146947Pylaiella littoralis U1_48CDSP-littoralis_Contig204 146776..146947 +
1680789998.1236455-CDS-P-littoralis_Contig204:147667..1477941680789998.1236455-CDS-P-littoralis_Contig204:147667..147794Pylaiella littoralis U1_48CDSP-littoralis_Contig204 147668..147794 +
1680789998.1338527-CDS-P-littoralis_Contig204:147942..1480431680789998.1338527-CDS-P-littoralis_Contig204:147942..148043Pylaiella littoralis U1_48CDSP-littoralis_Contig204 147943..148043 +
1680789998.1428885-CDS-P-littoralis_Contig204:148264..1484231680789998.1428885-CDS-P-littoralis_Contig204:148264..148423Pylaiella littoralis U1_48CDSP-littoralis_Contig204 148265..148423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.51.3

>prot_P-littoralis_Contig204.51.3 ID=prot_P-littoralis_Contig204.51.3|Name=mRNA_P-littoralis_Contig204.51.3|organism=Pylaiella littoralis U1_48|type=polypeptide|length=394bp
MVLMSRVLWTSGVLWVPGLSTFSSVHIGFGLLHAIRVRVPLSCVDFGAIL
AGATSSAVFSGSVNPGAFDEIHRACNDIPVNKKIFVRGLPWETTDQSLRA
VFEQYGEIAEATVVMDKMTQKSKGYGFVTFKGMDGAHAALENPEKMIDGR
VSLCNLAALRSSQPLPQRGPGATQGGGMQGTAVGMLGGAVGGSEDVSARK
IFVRGLSWDTTTESLRTMFSQYGELEDAVVTTDRASGKSKGYGFITYRFA
ASAAAAVAEPEKQLDGRLTHCNIAAEGASNRNKNQNFGGGLQAGQWGMMG
QQQYPAQGQGAGQWGAAAGAQAQAFAGQGQWGQQQQFGAAQGVQGGYGSG
VQAGYGNGAQAATYGTNGAATYGQAAGQAAGGAGAWGGQQQGY*
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mRNA from alignment at P-littoralis_Contig204:143604..149272+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.51.3 ID=mRNA_P-littoralis_Contig204.51.3|Name=mRNA_P-littoralis_Contig204.51.3|organism=Pylaiella littoralis U1_48|type=mRNA|length=5669bp|location=Sequence derived from alignment at P-littoralis_Contig204:143604..149272+ (Pylaiella littoralis U1_48)
CGGCAGAGAGCCGCAAGGAGAAGCTCGAGACATGGCTCAAGCCTTTGGAC
AACGAGCAACTGGTTAAACTCCTTCAAGACATGTACGTTTGACCAACTGC
AAAGGCACTAAGCTTCCATAGCAGCAGAGACAATCCGCTTGTTTCGTTCG
TATCACGCATGTCGAACACCGGTTGGTTGTATCGTCGATCTACTGCTGTA
TCGAGCGTGTTGCAGGCCCCCCACGGATCTGCAGGGGGGATAAGGTAGCA
CCAGTGTTAATCTTAGGTATGGTAGAAACATGTTGGTGGGTGATAATAAC
AAAGCTTAGAGATTTGAGAAGGTGCGTCAATGGCGTATGAAAACTGCAAG
TAAAAGAGGTTCTTCGAAGTATTATACGGAGCACTTGTGAGCGATGGCCA
TGGGTGTGTGTGTCTGTTTTCATCCCTTTAGTCCCTTTAATTGGACGCCT
CTACCCTTTTCGGGTAGGTATAGACGCTCCAACCGGGGTCACACAAGTTT
ACTACGAAAAAATGCATGTGTGCAAGGCTACTAACTGTACAAGTATGTAG
AGCATTGCGGATGAGGTGCACTCAGCTCACTTCCTTTGTACTGCTGTAGT
TTACCTTACCGTGCTCCGTGTTCAGGCCATGCGTCCTTGAATGCCTAGAC
TACGTTTTGCTTGAGGACCCTCGTTTTGAGCATTTTCTGTGTCTTGTGTG
TGTGCTTTCCCCGATTCCTTGGTTGTGTGAATTCTGTCTCTGTTTCGTGC
CCTCTCGTACATGGTTCTGATGTCTCGCGTGCTCTGGACGTCTGGCGTGC
TCTGGGTTCCTGGCCTTTCTACCTTCTCTTCCGTGCACATTGGCTTCGGC
TTGTTGCATGCAATACGTGTGCGGGTGCCATTGTCTTGTGTGGATTTTGG
GGCCATTTTGGCCGGGGCAACTTCTTCTGCCGTCTTCAGTGGGTCTGTGA
ACCCGGGTGCATTCGACGAGATCCACCGGGCCTGCAATGATATTCCGGTA
TGATCCCTCTTGTTTATGGTTCAGTATAGTTGGGTTTAGCAGTTGTTCGA
CAAAGACACGCTGCTGCAAGAGTACTTGGCCGCACACTGAGGACATGTAG
AAGGCCGGTACTGCTGTTGGTCTCGGTACGGCATCTGCTACCGCTGTATT
TCTGACAATTTTACATGCCCACTGACACGGCTGAAACCATTCGAAGTCGG
GGTCGCAGCTCATACGAAGCACGAACCGTTTGATGGACTGGTGAATCTGA
AAAACGTATCTAAGCTGCTTTGAGGATTGTTTGGTCTTGCCGGGGTTCCC
TCTGCGAGCTAAGAGGTAGGCCTTTACTTTTCAACCTAGTTCACCGCGAA
CTCCTTCAATTCACGTATCACACTCGACTGCGGCAGCCCCTGTACAATCG
GTAGCCTCCGCACTCAATCGTCCGGAAATTGTCCTCGGCACCGCACCAGT
AGTAGCGCACCCTAACAGCCGTAGCTGCTTTGGATTCAGACAACATCTGA
CTTTCGATTGCACGCACGGGACGGTCAGCCATATCATACCAAGTAAGAAG
CTTATGTTACTCAAAGCCATTTAGCCGTGTGTAGGGACCATCGTGCTCTC
GTCTCTTTGTTGCTCCTTGTTGACATTTAATATTAATTGGCCCGCAATGG
TAGTAGTCGTGGATGAAAGCGCGCGGTGTTTCTTACCTCTTTTCTCTCGA
ATCGCATTGATTTTTCAAAGCTGTGATGTAGCAGTACCTGAATCTACCCG
CCTCACACTGTCACCAGGTCAACAAGAAGATCTTTGTTCGCGGCTTGCCA
TGGGAGACCACCGACCAGTCCCTTCGCGCCGTCTTCGAGCAGTATGGAGA
GATCGCTGAGGTGGGGTACAGAGCACCAAGGTTGAAATATGAAATCGTGT
CCCAGCCCAGTGCGCCATCAAGCATCACAGCCGTTGCCCGTCTTCCCTGT
ATTGACAAGCAGCCAGCGCTAGAAGTCGGTTGAGATGATCGAATTTCATT
CGCAAGCTGCCAGATGACCACAGAGGTCCGCGTGCTGTTGCTAAGAACGT
GTGCTCTTGTCAAGAAGTTTCCCCGACCGTGTTAACTTCAGCATCACCCA
TGGTAAGTTGCAGGTACACCGCATGTACCTCACGTGATACTAATCATAAT
TTGTATTTCAAAGCACCAATTTTGTACAGCTCGAAAAAGCCGACTGCCGA
ACCCCGCTTGTTGTGCGTTTGAAACTCGATGAGCAGGCAACTGTGGTGAT
GGACAAGATGACGCAGAAATCGAAGGGGTACGGGTTCGTTACCTTCAAGG
GAATGGACGGCGCTCATGCTGCCCTTGAAAACCCCGAGAAAATGATTGAC
GTGAGCAGGCATACATCCGCTTCTTGTACGCACGCGCGTACGATTGTCCG
TGAAGTCACGACCTCGAGTTAATTTATTTGGCGTGTACTCACACGCGGGT
TGTACTTTTCGCTCCGTCACGCCGCGATTGGGCGTAGCGCATTGGAATGC
CACTAAAGATGAACCGGAGGCAAACGTTTTAGCCCCGAAATACCGCAACG
CTTGGCACCATTTGGTAATGTCATCAGCCTCCTGTCGCCTTCCTTTCCAC
CGTCTTCCCTTCTGCTTAGAATATGACTCCGATCCGAAGTCACTCAAATG
TTCGGGTTCTTTTCTCTCGATTCCTCATGATACACTCGCGAAGTCCGCAA
CTTCCTGCCCTCGTCCGCGTCTTCCTCCCCTTGAGGAATCATAGGAATAA
ACCCTATACTTGCGCTCGCGGTCGTTCTTTGCAGCAAGTGTGTTATTTTC
CCTCACGTCTCTCCTCTATCTGATATTTTGTTCTAGGGACGGGTGAGCTT
GTGCAACTTGGCCGCCCTCCGGTCCTCTCAACCGCTGCCTCAGAGGGGGC
CCGGTGCCACGCAGGGGGGAGGCATGCAAGGTACTGCGGTCGGCATGTTG
GGTGGCGCCGTGGGTGGGTCAGAAGATGTCAGTGCAAGAAAGATCTTCGT
CAGGGGGCTCTCGTGGTGAGAAACCGAAACCTTGGCACGTACGGTCATGT
TTTCACGCTTCGTACGGAATAGACCGACCGCAAGCTGTGGAAAGAACACG
GACAGCACGCTGCTCGAAGGACACTCCCTTCAAAACAAATTTTACTGACA
CGGGTGTCTTGCATTTGAACAGGGACACCACGACAGAGTCGCTGCGCACA
ATGTTTTCACAGTATGGCGAACTGGAGGATGCTGTTGTGACGACGGACCG
CGCTTCCGGCAAGTCAAAGGGGTACGGATTCATCACCTATCGCTTCGCCG
CCAGTGCCGCTGCTGCAGTTGCTGAGCCGGAGAAACAGCTTGATGTGAGT
ACACCGAGCTCAAGTCCCCTGTTTGCTGACCTTGCGGCGTAACGTTTGAA
TCCACTTTACGGTCACGGAAGATATTTTGGTACCAGGTAAAGCGATAAGT
TGCACGACGGGCTCGCTGTCTGGAGGACAAGCGTTATGCCACATGAAGTA
AACGTACAGTCGTCTTGCTGTCCATAGCCTTGCGTCAAACAAACGGTCAA
CCCAAAAATCACTTTGAAAGTGAAAGTCACCTACAACTATAAAATAGAGT
CCATGGCTCCTCCTCAAGCACCGAGAACCAGCCAAGCTACATACAAGTGA
AATTCGGAAATTTTACCCCTGCACCCTGGCGTTTTCACTGCGGGGGACTT
CGATATTGAGTATCATTCTTCGAAGTATGACACAATACCTTGTTCAACGA
ACAACGCTGTCGTGACGGTGCGTGTACATTGCTCCGTTACTGCTGTATTC
GCCGCTAGTTCAGGAGTGATGAAACGGGCCGTTTTGTGGGTCGACATGTT
TCCGATGAATGCGATCCCTGGACATGAAAGCGAGCGATTTTGGCGTGCCG
GCTGACTACTCGCTACGTTAAAGATACCATTATTTAGGTCGGGACCACTA
GCACCGGAGGATGTATTGTCAAGTCTCCATCATGGAGATGGGTTTCAGAC
TAGTAGAGTGACTTCAAAACCTCAAAACGCCTCGCGCTTCCGCTGTCGTT
TGATGGCGGGCTAGGGTCGCCTGACACACTGCAACATCGCAGCGGAAGGG
GCATCAAACAGGAACAAGAACCAAAACTTCGGCGGTGGACTCCAGGCTGG
ACAGTGGGGCATGATGGGTCAGCAGCAGTACCCCGCCCAAGGTGCGAAGG
ACTGCCCTCAGCCAGATACGACAAGATAGAATCGCTTACGATGACATATG
CTGACACGATATTCATCAGACAACTTCGTCAGTAAGTCATGCGTATTAAG
TAACTCACACAAGTATTAACCAATGCGGAATCTCCGTAGGTCAAGGCGCG
GGGCAATGGGGTGCTGCCGCCGGTGCTCAAGCCCAAGCTTTCGCTGGCCA
GGGGCAATGGGGGCAGCAGCAACAGTTCGGCGCAGCTCAGGTACGCCCAT
TTTTGAACATGTTGCTGTACACGAATGCCTAGTGGTCCTGACGTACATTG
GCACTTCACGGATATTTATTAAAGTGGGTCGAAAGTGAACAAATGCGTGA
AGCTGCGGACAACTCTTTTGGTCCATAACACTAACCCTTTCCACCCACTT
TATCCAACTGCGTTCTCTGTCCTCGGCTTCGTTGGTATGCATTACTTTTT
CGCGGAGACAGGGAGTGCAGGGTGGATACGGCAGCGGAGTGCAGGCTGGA
TATGGCAACGGGGCGCAGGCTGCCACGTACGGTACCAATGGTGCTGCCAC
TTACGGTCAGGCCGCTGGCCAGGCCGCTGGTGGAGCTGGCGCATGGGGAG
GGCAGCAGCAAGGATACTGATTTACTTACCCCCCCAAAATTTTGGGAACG
CACAACGTTTGATTCAATCTTATCATTCCAAAAAAGGAGATGAATGACTT
TGAGCTGTTGTGCGTTAAGCGGTACAGTCTTTTCCGAGGCTCTTGAGGCC
GTCATCCTTACACCAGTATAGGATACATTTAGGGTGGAGTTAGGCGGAAG
ACGAGTATGTAAGATTGAATACGGCCGTCGAAGGGGCGTTCGTTCGTGCC
CTACTCCGCTGTAGCTCAAACTCATGAAATTCACTACGAAGGGTACTGTG
GAGCGGTTAGACGAAAGCAAGAGCTGGCCAAGGCAAGCAGGTGTTTTCAG
TGTGGCTGTGTATTGCGACGTACGTCCACCTAGGCACTATTCAAGGACTT
CGATAATTAATTTCTGTGGTAAGATATATCGGGCATACATGTGGTTGATA
ACCGCGCACGTGTTCGGTGACGTGAGACGCACACGCTCTCATTCTTCAAT
CGTTTAGAATCGGCATGAACGGTTGAAGCTCTAACAAACCTCGTACACTG
TGATGACGAGACCGAAAGCATGAATTATACAAATGTGTATCTTCCTTCTC
CTGTGGTGGTATGTAAGGACGCAGGTATCGATAGGCTACCGAAACAAGGT
TGCAAGTAATCTCATGCCTAGCCAAACCTATTTTCCCTGATAAATTGGGG
CAATCGTAAAAAGTTCGTCGGAAACTTGAGACCACCCTAAAAAGGCGTTT
CTCATTACATAAGATGCGCTTTTCAAACACTCAAAACCGAATTATTCGAA
ATATATTTTTAATAACGTTTCAAATGCGCTCTCTTAAAGGGTGTCCAGGG
ACAAAAGCGATAAAAATAA
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Coding sequence (CDS) from alignment at P-littoralis_Contig204:143604..149272+

>mRNA_P-littoralis_Contig204.51.3 ID=mRNA_P-littoralis_Contig204.51.3|Name=mRNA_P-littoralis_Contig204.51.3|organism=Pylaiella littoralis U1_48|type=CDS|length=1182bp|location=Sequence derived from alignment at P-littoralis_Contig204:143604..149272+ (Pylaiella littoralis U1_48)
ATGGTTCTGATGTCTCGCGTGCTCTGGACGTCTGGCGTGCTCTGGGTTCC
TGGCCTTTCTACCTTCTCTTCCGTGCACATTGGCTTCGGCTTGTTGCATG
CAATACGTGTGCGGGTGCCATTGTCTTGTGTGGATTTTGGGGCCATTTTG
GCCGGGGCAACTTCTTCTGCCGTCTTCAGTGGGTCTGTGAACCCGGGTGC
ATTCGACGAGATCCACCGGGCCTGCAATGATATTCCGGTCAACAAGAAGA
TCTTTGTTCGCGGCTTGCCATGGGAGACCACCGACCAGTCCCTTCGCGCC
GTCTTCGAGCAGTATGGAGAGATCGCTGAGGCAACTGTGGTGATGGACAA
GATGACGCAGAAATCGAAGGGGTACGGGTTCGTTACCTTCAAGGGAATGG
ACGGCGCTCATGCTGCCCTTGAAAACCCCGAGAAAATGATTGACGGACGG
GTGAGCTTGTGCAACTTGGCCGCCCTCCGGTCCTCTCAACCGCTGCCTCA
GAGGGGGCCCGGTGCCACGCAGGGGGGAGGCATGCAAGGTACTGCGGTCG
GCATGTTGGGTGGCGCCGTGGGTGGGTCAGAAGATGTCAGTGCAAGAAAG
ATCTTCGTCAGGGGGCTCTCGTGGGACACCACGACAGAGTCGCTGCGCAC
AATGTTTTCACAGTATGGCGAACTGGAGGATGCTGTTGTGACGACGGACC
GCGCTTCCGGCAAGTCAAAGGGGTACGGATTCATCACCTATCGCTTCGCC
GCCAGTGCCGCTGCTGCAGTTGCTGAGCCGGAGAAACAGCTTGATGGTCG
CCTGACACACTGCAACATCGCAGCGGAAGGGGCATCAAACAGGAACAAGA
ACCAAAACTTCGGCGGTGGACTCCAGGCTGGACAGTGGGGCATGATGGGT
CAGCAGCAGTACCCCGCCCAAGGTCAAGGCGCGGGGCAATGGGGTGCTGC
CGCCGGTGCTCAAGCCCAAGCTTTCGCTGGCCAGGGGCAATGGGGGCAGC
AGCAACAGTTCGGCGCAGCTCAGGGAGTGCAGGGTGGATACGGCAGCGGA
GTGCAGGCTGGATATGGCAACGGGGCGCAGGCTGCCACGTACGGTACCAA
TGGTGCTGCCACTTACGGTCAGGCCGCTGGCCAGGCCGCTGGTGGAGCTG
GCGCATGGGGAGGGCAGCAGCAAGGATACTGA
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