mRNA_P-littoralis_Contig204.42.4 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.42.4
Unique NamemRNA_P-littoralis_Contig204.42.4
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: D7FN45_ECTSI (Similarities to Heat shock protein 70-probable alternative splicing n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN45_ECTSI)

HSP 1 Score: 721 bits (1861), Expect = 4.910e-255
Identity = 382/495 (77.17%), Postives = 413/495 (83.43%), Query Frame = 1 
Query:   82 MSKILVLVAVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSAVSEEAAEHQFRVIEINQDRTEPWFEIKRSGHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLEGSIVTLEEAEGAISCGFTTPTCAVHNLYPLSEGLRRLLTDGETAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATIAH 1566
            MSKI V+ AVVVGACAALAA+GFRGRQTVVGIDLGTT+SVIGVNE GKI IIPGA+G+PLLPSVVSFL+NGRVAVGQDA KLLE QPANTIYGAKRFIGR+FSDSAVSEEAAEHQF++++  +D +E WF+IKRSGHPP+VSPQ+VGSHVLG+LL+RAA YLGHSQVSKAVIAVPAKFDARQ+AATVEAFRLAGLQVIR LEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGG                                   SDFDQCV H LERKL+ SIV LEEAE A+SCGFTTPTCA+HNLYPLSEGLRRLLTDGETA +ECM+ PEEA+RRNLRSP  KKG P+E      + +S DAHR  G     C +W   SL+LTR EYE SCASLFDRGVAPVDRLL +LDL VDEIDEVVMVGGMTRTPRVRSLL SHL VDRLNVDIDPDVVVAYGAATIAH
Sbjct:    1 MSKITVVAAVVVGACAALAATGFRGRQTVVGIDLGTTFSVIGVNEGGKIAIIPGAEGSPLLPSVVSFLDNGRVAVGQDATKLLESQPANTIYGAKRFIGREFSDSAVSEEAAEHQFQLVQTKEDLSEAWFKIKRSGHPPSVSPQMVGSHVLGELLQRAAVYLGHSQVSKAVIAVPAKFDARQKAATVEAFRLAGLQVIRMLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGG-----------------------------------SDFDQCVAHLLERKLDRSIVALEEAEDAVSCGFTTPTCALHNLYPLSEGLRRLLTDGETAAVECMIPPEEAQRRNLRSP--KKGTPSE------DGDSQDAHRFAGAEGERCKMWNSLSLELTRTEYEQSCASLFDRGVAPVDRLLHHLDLTVDEIDEVVMVGGMTRTPRVRSLLESHLGVDRLNVDIDPDVVVAYGAATIAH 452
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A7S3XQ15_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ15_HETAK)

HSP 1 Score: 400 bits (1028), Expect = 1.770e-129
Identity = 230/497 (46.28%), Postives = 298/497 (59.96%), Query Frame = 1 
Query:   82 MSKILVLVAVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSAVSEEAAEHQFRVIEINQDRTEPWFEIKRS-GHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLEGSIVTLEEAEGAISCGFTTPT---CAVHNLYPLSEGLRRLLTDGETAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATI 1560
            M  + ++VA++V  CA LAA GF+GR +VVG+DLGTTYSVIG+N  G + I+P  +G+ L+PS V+FL  GRVAVG+ A + LE  P +TIY AKRFIGR  +D ++ +E AEH F ++E   + +E WF +  + GH  AV+P+ VG+ VL  L    AD+LG+ QV KAVIAVPAKFDARQR  T EA+R AGL+V+R LEEPTAAALA+GLHRKP+V+HILVYD GGGTLDVS+LFVN+GSVEV  S+GDD+LGG                                   SDFDQC+ H L  +L   +V         +CG        C  H LYPLSE L+R L+D   + + CM+    A   ++R  +     P                            W    L +TR E+EH+C+ LF+R + PVD +L  + L    +DEVVMVGG TR PRVR+ L  HL V+ LN  IDPD+ VAYGAAT+
Sbjct:    2 MGALGIIVAILVVGCAVLAAMGFKGRISVVGVDLGTTYSVIGINNGGTVEIVPDKEGHVLVPSTVAFLPEGRVAVGRAARRYLEHDPTHTIYNAKRFIGRAAADPSLVKELAEHDFELVERPGNASEGWFRLDEARGHGAAVAPEGVGARVLLHLKAMVADHLGYDQVDKAVIAVPAKFDARQRQMTAEAYRQAGLRVMRVLEEPTAAALAYGLHRKPDVHHILVYDFGGGTLDVSVLFVNEGSVEVEASEGDDHLGG-----------------------------------SDFDQCLAHHLVARLGPDLVDAGTFRRVEACGGAMAEAHLCTQHLLYPLSEELKRRLSDQLYSDVRCMVQRPGAS--SMRGGEADVCAPAN--------------------------WVETQLTVTRDEFEHACSDLFERAMIPVDLVLEEVGLTARGVDEVVMVGGTTRIPRVRARLKEHLGVESLNTHIDPDITVAYGAATV 435
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A835Z661_9STRA (Heat shock protein 70 family n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z661_9STRA)

HSP 1 Score: 351 bits (900), Expect = 2.000e-110
Identity = 217/498 (43.57%), Postives = 283/498 (56.83%), Query Frame = 1 
Query:   94 LVLVAVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSA-VSEEAAEHQFRVIE--INQDRTEPWFEIKR-SGHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLE-GSIVTLEEAEGAISCGFTTPTCAVHNLYPLSEGLRRLLTDGETAMLECMMLPEEARRRNL--RSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATIAH 1566
            +VL+A++V  CA LAA+GF+GR TVVGIDLGTTYSV+GVNE G + II   DG+ L+PS+VSFL +G VAVG  A +L     A TIY AKR IGR+F D   +  E     FR++    ++D ++ WF+++  + HP A+SPQ +G+ V+ +LLR     LGH+QV  AVIAVPAKFDARQR AT +AF+ AGL+V+R LEEPTAAALA+GL  + +V+H+LVYD GGGTLDVSLL+V +GSV+V+ SDGDD LGG                                    DFD+ +   L  KL  G     E      +C F  P CA+  L   +E +++ L+  E A   C+  P  A    L  R P                                C  W    + +TR E+E + A LF+R +A VDRL+        EI E VMVGG +R PRVR+ L   L++  LN  IDPDV VAYGAAT+AH
Sbjct:    3 IVLIALLVAVCAVLAANGFKGRVTVVGIDLGTTYSVVGVNEGGVVRIISAEDGSYLVPSMVSFLRSGEVAVGTAARQLAGNDTATTIYEAKRLIGREFPDEEDLLAEGTGRPFRLVRKPFSEDPSDAWFDLQSMTQHPAAISPQGIGTMVVRELLRMVHLDLGHTQVRAAVIAVPAKFDARQRRATAQAFQAAGLKVVRVLEEPTAAALAYGLQNRDDVHHVLVYDFGGGTLDVSLLYVAEGSVQVITSDGDDALGG-----------------------------------GDFDRAMASVLVAKLAAGGGGAPEGCAPRAACAFDAPACALSALRGEAERVKQELSTAEAATARCVR-PAAAAAATLIGRCPKA------------------------------CAAWELTEVAVTREEFEAAAAPLFERALAAVDRLMEKSGHDAGEIQEAVMVGGTSRMPRVRADLQRRLRLSHLNTHIDPDVTVAYGAATVAH 434
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A6U1BP74_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BP74_9STRA)

HSP 1 Score: 329 bits (844), Expect = 5.100e-102
Identity = 198/496 (39.92%), Postives = 265/496 (53.43%), Query Frame = 1 
Query:   79 AMSKILVLVAVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSAVSEEAAEHQFRVIE--INQDRTEPWFEIKRSGHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLEGSIVTLEEAEGAISCGFTTPTCAVHNLYPLSEGLRRLLTDGETAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATI 1560
            AM  +L  VAV V ACA +AASGFRGR   VGIDLGTTYSVI +       ++       L+PS+V F   G V VG DA+  L   P N I+ AKRFIGR F D AV E+ A H FRV+   + + R++ WF +   GH   VSP+ VG HVL +L   A   LGH Q+++AV++VPAKF+ RQR ATV+A++ AGL+V+R ++EPTAAA+A+GL +K +V  I+VYD GGGTLDVSLL VN+ S++++ + GDD LGG                                   +DFDQC+   L      S   L       S     P C    L P++E ++  L+D + A   C                              NR   D               R  S+++TR+ +E +C  LF R + PVD LL    +  +EIDEVV+VGG +R PR+R LL   + VD LN++IDPD+ VA GAA+I
Sbjct:   25 AMQWVLTAVAVAVAACAMMAASGFRGRPNTVGIDLGTTYSVIALRTLNATRVLKDEHQRSLIPSMVYFGPGGVVKVGYDAMAFLHSDPENVIFNAKRFIGRSFDDEAVQEQRAVHPFRVVNRSVPEVRSQAWFALSAQGHEDWVSPESVGKHVLQRLKDIAVFNLGHKQITRAVVSVPAKFNTRQRQATVDAYKAAGLKVMRVIDEPTAAAVAYGLDKKSDVQWIIVYDFGGGTLDVSLLMVNEESIQMIATHGDDQLGG-----------------------------------ADFDQCLMEHLR-----STSWLPHDADPCSPRDDVPACGDTELRPMAESIKCQLSDAQVATASCGY---------------------------RNRSDEDC--------------RELSIEVTRSAFEEACDPLFQRVLRPVDLLLGESGMPAEEIDEVVLVGGTSRIPRIRELLKEKIGVDHLNMEIDPDITVAVGAASI 439
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A7S2H244_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H244_9STRA)

HSP 1 Score: 305 bits (782), Expect = 6.320e-93
Identity = 194/490 (39.59%), Postives = 260/490 (53.06%), Query Frame = 1 
Query:  124 CAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSAVSEEAAEHQFRVIEINQ-DRTEPWFEIKRSGHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLE---GSIVTLEEA---EGAISCGFTT----PTCAVHNLYPLSEGLRRLLTDGETAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATI 1560
            CA LA +G++GR  VVGIDLGTTYSVI +     + ++       L+PS+V F   G + VG  A   LE +P + IY AKR+IGR +   AV E   +H F V+       +  WF +   GH  AVSP+ VGS+VL  LL  A   LGH Q++KAV+AVPAKFD +QR AT+ A+  A L+V+R +EEPTAAA+A+GL +KP+VN+ILVYD GGGTLDVSLLFVN  SV+VL + GDD LGG                                   SDFD C+T  L+ ++    GS   L EA   EG I    +T    P CA   +  L+E ++  L+   T    C                                    A+    GG        P  L + R  +   C+ LFDR ++PV+ LL+ +++   E+DEVV+VGG +R PR+RSLL  +  +D LN +IDPD+ VA GAA+I
Sbjct:   15 CAILAVNGYKGRPDVVGIDLGTTYSVIALKTEYGVKVLRDEANRSLVPSMVHFGSGGAIHVGYAAESFLETEPNHVIYNAKRYIGRTYDAPAVQELEGKHGFAVVANKSVSPSGNWFSLDVPGHQSAVSPETVGSYVLRHLLDIAYFNLGHRQITKAVVAVPAKFDTQQRRATIAAYTQANLKVVRIIEEPTAAAVAYGLDKKPDVNYILVYDFGGGTLDVSLLFVNKESVQVLHTHGDDELGG-----------------------------------SDFDYCLTSWLDEQVSTAAGSQEKLHEACGEEGYIQTVDSTSDAPPLCAPSYIRQLAESMKCSLSVNATVHESCT-----------------------------------AYFPGKGGPQDSPRCAPLQLTVERDSFHQRCSDLFDRVLSPVEALLKEINMDAAEVDEVVLVGGTSRIPRIRSLLSEYFGIDHLNTEIDPDLTVAIGAASI 434
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A7S0SSX6_9STRA (Hypothetical protein n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SSX6_9STRA)

HSP 1 Score: 293 bits (749), Expect = 1.270e-88
Identity = 190/479 (39.67%), Postives = 263/479 (54.91%), Query Frame = 1 
Query:   76 GAMSKILVLVAVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSAVSEEAAEHQFRVIEINQDRT---EPWFEIKRSGHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLEGSIVTLEEAEGAISCGFTTP-------TCAVHNLYPLSEGLRRLLTDGETAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLL 1482
            G+ S +  L A  V  CA LAA GFRGR T +G+DLGTT+SV+GVN  GK+ II  + G+ + PSVV +  NG +  G DAL  L   P NTIY AKRFIG+ ++DS+V E  ++H + V +++  ++   E  F +  SG    VSP+ VGS VL  LL+  AD+LGH+QV+KAVIAVPAKFD+ QR AT +A++ AGL+V+R +EEPTAAA+A+ LH+K N+NHILVYD GGGTLDVSLLFV+ GSV+V  +DGDD+LGG                                   SDFD C+   L  K+     T ++A  A     T P        C   ++   +E +++ LT    A+  C +L            D +K + +                               S+D    ++  +C  LF RG+ PV RLL  L +  ++IDEVV+VGG TR P+++ +L
Sbjct:    2 GSSSWLFSLAAAFVVGCAVLAALGFRGRVTTIGVDLGTTFSVVGVNINGKVHIINDSKGHLIFPSVVHYQSNGEILAGYDALPFLTSDPLNTIYNAKRFIGKNWNDSSVIEYGSKHAYTVDKLSHGQSNFSEVGFALS-SGL--IVSPEQVGSQVLKYLLKLTADFLGHNQVNKAVIAVPAKFDSIQRQATGDAYKRAGLKVVRVIEEPTAAAVAYKLHKKSNINHILVYDFGGGTLDVSLLFVSKGSVQVYATDGDDSLGG-----------------------------------SDFDMCLYDLLVNKVYSE--TGQQAHSADE--ITLPDGIQMSDVCVRSSIRHKAEEIKKKLTYANEAVFTCQLL------------DTQKTVTS-----------------------------TISVD----DFTSTCDHLFQRGLLPVTRLLTELGMTKNDIDEVVLVGGTTRIPKIKQML 393
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A1Z5JD96_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JD96_FISSO)

HSP 1 Score: 290 bits (742), Expect = 1.680e-86
Identity = 198/504 (39.29%), Postives = 256/504 (50.79%), Query Frame = 1 
Query:  100 LVAVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNE----AGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSAVSEEAAEHQFRVIEINQDRTEPWFEIKRSGHP--PAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVN-DGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTH-------ELERKLEGSIVTLEEAEGAISCGFTTPTCAVHNLYPLSEGLRRLLTDGE---TAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATI 1560
            L+ V +  CA +A  GFRGR +V GIDLGTT SVI V +     GKI  IP   GN ++PSVVSF+ +    VG+ A +L+E  P +TIY AKR +GR F+D +V     E +F V+  N D     F +    H     ++P  VGS V+  LL+    YL H  V  AVI VPAKFDARQR ATV+AFR AG+ V R LEEP AAALA+GLH K  V+ ILVYD GGGTLDVSLL V+ DG V+V+GSDGDD LGG                                   +DFD  + H        +  ++   +  +E A+  + C    P C   + + L E L+  L+      T  ++   L  E                            HD           C   RP +L+LT A Y      L DR VAP+ RLL    L+  +IDEVVMVGG TR P++R L+   L   ++N  IDPD+ VAYGAA++
Sbjct:   46 LIGVAILICAIMAKMGFRGRASVAGIDLGTTNSVICVQQLEKGVGKIECIPDEFGNVIVPSVVSFVSSKETIVGRAAKELIESHPLSTIYQAKRVLGRTFTDPSVQHFQNEVEF-VLRENDDDGSVVFHVANHHHHIHQTITPIQVGSKVVKHLLQMTNRYLQHENVKSAVICVPAKFDARQRQATVQAFREAGVSVQRILEEPAAAALAYGLHHKDGVDFILVYDFGGGTLDVSLLQVSGDGFVDVMGSDGDDQLGG-----------------------------------ADFDSAIAHYWLQQHPSVVERVHRHLPHMEYAD--LPCLQEYPLCTASSFHTLGEQLKIQLSSSSINATTSVQAQCLGLE----------------------------HDVDNIA------CSSLRPITLELTPAVYAQIVQPLLDRSVAPIHRLLHDFQLQSQDIDEVVMVGGTTRMPQIRQLVQEALLQSKVNTHIDPDITVAYGAASV 477
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A7S3NKF0_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NKF0_9STRA)

HSP 1 Score: 287 bits (734), Expect = 6.210e-86
Identity = 194/515 (37.67%), Postives = 268/515 (52.04%), Query Frame = 1 
Query:   85 SKILVLV-AVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAG----------------KITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIY---GAKRFIGRKFSDSAVSEEAAEHQFRVIEINQDRTEPWFEIKRS-GHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLEGSIVTLEEAEGAISCGFTTPTCAVHNLYPLSEGLRRLLTDGETAMLE-CMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHS-CASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATI 1560
            S IL+L  + +V  CA L+A GFRGR   VGIDLGTTYSVI V++ G                   +I   +G  L PS+V+FLENG+  VG  AL LL+ Q  +  Y    AKRFIGR F D++V+ +A E+ ++VI    + T   F+I  + GH  +V+P+ VG  V+ +LL+ A   LGH+ ++ AVIAVPA F   Q  AT +AF+ AGL++ R L EP AAA+A+GL R+P+V H+LVYD GGGTLDVS+L+V DGSVEV+ + GD++LGG                                   SDFD C+ H L   L  +     +A+  I      P CA H L   +E  +  LTD E  +   C  L ++                                             +P S  + R+ +E   C  LF R ++ V   L+   +R+D+IDEVV+VGG +R P+VRS + + L + RLN DIDPDV VA GAA++
Sbjct:    4 SSILILFGSALVAICAVLSALGFRGRVNTVGIDLGTTYSVIAVSDTGFMKRKKKKNAAERYMPSARVIYDENGEALTPSMVAFLENGKTEVGWSALNLLDSQATDARYVIRDAKRFIGRAFDDASVAPQAEEYSYQVI---PNGTCAAFQIDPTRGHGASVTPERVGELVVRRLLQSAQRDLGHTGITTAVIAVPAGFGPNQTRATADAFKAAGLKIARILPEPVAAAVAYGLQRRPDVKHVLVYDFGGGTLDVSVLYVRDGSVEVVANHGDNDLGG-----------------------------------SDFDHCIAHALATDLNKTEPITTDAQKQI------PPCAPHVLLRYAEDAKIALTDTERVVTPPCRRLTDD---------------------------------------------KPVSTTILRSYFESQLCGHLFQRAISVVHSTLKESMIRLDDIDEVVLVGGTSRIPKVRSDIKAALNIKRLNTDIDPDVTVAVGAASV 429
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A7S4A5K1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A5K1_9STRA)

HSP 1 Score: 285 bits (728), Expect = 2.450e-85
Identity = 179/490 (36.53%), Postives = 262/490 (53.47%), Query Frame = 1 
Query:   91 ILVLVAVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSAVSEEAAEHQFRVIEINQDRTEPWFEIKRSGHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLEGSIVTLEEAEGAISCGFTTPTCAVHNLYPLSEGLRRLLTDGETAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATI 1560
            +++ V+V+V   A L+A GF+GR  V+G+DLGTTYSV  V+E G++ +        L  S V+FL++G V VG  A +   + P N IY AKRFIGRK+ D  V+E+A ++ F V+E N    +  F +    H   ++P  VG+ V+  LL+   + LGH  V +AVIAVPA F A Q AAT EAF+ AGL+V R + EP AAA+A+GLH+K NV+HILV+D GGGTLDVS+L+V  GS+EV+ + GD++LGG                                   +DFD C+  +L +++  ++ +  + +  +    TT  C  H L  L+E ++  ++  +T   +C                                    A R++ G E          L LT+  +E +CA LF R +  VD  L    L   ++DEVV+VGG +R P +R LL   + V +LN++IDPDV VA GAA+I
Sbjct:    6 LILFVSVLVAVSAVLSALGFKGRVEVIGVDLGTTYSVAAVSEKGRVRVFEDPVRGKLTASTVAFLQDGGVLVGNAAKRHALKDPKNVIYDAKRFIGRKYDDPTVAEQAKKYAFAVVE-NTTTHDAAFRV----HGRTIAPAEVGAEVVKALLKTVNEDLGHENVKRAVIAVPASFGAAQTAATGEAFKAAGLRVARVMPEPVAAAVAYGLHKKENVHHILVFDFGGGTLDVSILYVQKGSIEVVANGGDNDLGG-----------------------------------TDFDGCIADDLTKQVN-AVASSTDCDDFV----TTEPCEPHVLQQLAEEMKVQVSSVDTVQRKC------------------------------------AARTKKGCE-------ELELTLTKQRFEKTCAHLFQRALKTVDDTLTNGMLTKKDVDEVVLVGGTSRVPHMRELLRKSIGVSKLNLEIDPDVTVAVGAASI 407
[Close]
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Match: A0A5D6XM32_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XM32_9STRA)

HSP 1 Score: 282 bits (721), Expect = 1.030e-83
Identity = 186/503 (36.98%), Postives = 264/503 (52.49%), Query Frame = 1 
Query:   67 TFGGAMSKILVLV--AVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKITIIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGRKFSDSAVSEEAAEHQFRVIEINQDRTEPW--FEIKRSGHPPAVSPQVVGSHVLGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRTLEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSDGDDNLGGE-VPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVTHELERKLEGSIVTLEEAEGAISCGFTTPTCAVHNLYPLSEGLRRLLTDGETAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGGEGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDEVVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATI 1560
            + G  +  +L+LV  A  VG+ A LA  GF GR  VVG+DLGTTYSV+ +++   +++IP A G+ ++PS+V+FL  G   VG+ A     + P +T++ AKRFIGR+F D   S +AA ++F V             F +  +GHP  VSP  VG+ V+  L   A  ++GH+Q++KAVIAVP  FDA QRAAT  AFR AGLQV R LEEPTAAA+A+GLH+ P V+ +LV+D GGGTLDVSLLF   GS+ V+ + GD++LGGE + A      ++  FL R                       +  ++   L  +   +EEA+   +   T   C    +   +E L+R L+   +A   C++    ARRR                                            S+ +TRA++E  CA L  R +APV  ++    +  DE+D VV+VGG +R P VR+ L +          IDPDV VAYGAA +
Sbjct:   20 SLGAHVGSLLLLVGGAFAVGS-ALLARQGFTGRDHVVGVDLGTTYSVVAISQRNNVSVIPDAFGHVIIPSIVAFLPRGETLVGRQARAHRTKDPQHTVFNAKRFIGRQFDDVVQSGDAAAYEFAVARAASPGGGGGVCFPLAVAGHPACVSPVAVGAAVVRHLRAMAQRFVGHAQITKAVIAVPVDFDAAQRAATQRAFRAAGLQVSRVLEEPTAAAIAYGLHQDPTVSFVLVFDFGGGTLDVSLLFARSGSISVVDTLGDNHLGGEDIDA------QVAAFLTRE----------------------IAAQIGTTLTSTASEMEEADSDTNEDPTQLPCTPAGIRRAAELLKRALSAAPSARASCVVQSSGARRR---------------------------------------AGDTVSVLVTRAQFEELCADLLARTLAPVREIIAANHMTPDEVDAVVLVGGSSRIPWVRASLTALFGGRAPLATIDPDVAVAYGAARV 454
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.42.4 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN45_ECTSI4.910e-25577.17Similarities to Heat shock protein 70-probable alt... [more]
A0A7S3XQ15_HETAK1.770e-12946.28Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835Z661_9STRA2.000e-11043.57Heat shock protein 70 family n=1 Tax=Tribonema min... [more]
A0A6U1BP74_9STRA5.100e-10239.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2H244_9STRA6.320e-9339.59Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S0SSX6_9STRA1.270e-8839.67Hypothetical protein n=1 Tax=Chromulina nebulosa T... [more]
A0A1Z5JD96_FISSO1.680e-8639.29Uncharacterized protein n=2 Tax=Fistulifera solari... [more]
A0A7S3NKF0_9STRA6.210e-8637.67Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S4A5K1_9STRA2.450e-8536.53Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A5D6XM32_9STRA1.030e-8336.98Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:92136..104933 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog44056.XP_009038148.1
Preferred nameHSPA13
PFAMsHSP70
Model size2199
Max annot lvl2759|Eukaryota
KEGG koko:K03283,ko:K09491
KEGG TC1.A.33,1.A.33.1
KEGG Pathwayko03040,ko04010,ko04141,ko04144,ko04213,ko04612,ko04915,ko05134,ko05145,ko05162,ko05164,ko05169,map03040,map04010,map04141,map04144,map04213,map04612,map04915,map05134,map05145,map05162,map05164,map05169
KEGG ModuleM00353,M00355
Hectar predicted targeting categorysignal peptide
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0006950,GO:0008150,GO:0010033,GO:0012505,GO:0035966,GO:0042221,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0050896
Exons7
Evalue7.48e-87
EggNOG OGsCOG0443@1|root,KOG0101@2759|Eukaryota
Ec32 ortholog descriptionHeat shock protein 70 family
Ec32 orthologEc-06_008350.1
DescriptionATP binding
Cds size1488
COG categoryO
BRITEko00000,ko00001,ko00002,ko01009,ko03009,ko03029,ko03041,ko03051,ko03110,ko04131,ko04147,ko04516
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.42.4prot_P-littoralis_Contig204.42.4Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 92217..104303 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789997.5274444-UTR-P-littoralis_Contig204:92135..922161680789997.5274444-UTR-P-littoralis_Contig204:92135..92216Pylaiella littoralis U1_48UTRP-littoralis_Contig204 92136..92216 +
1680789997.6325982-UTR-P-littoralis_Contig204:104303..1049331680789997.6325982-UTR-P-littoralis_Contig204:104303..104933Pylaiella littoralis U1_48UTRP-littoralis_Contig204 104304..104933 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789997.5443485-CDS-P-littoralis_Contig204:92216..922531680789997.5443485-CDS-P-littoralis_Contig204:92216..92253Pylaiella littoralis U1_48CDSP-littoralis_Contig204 92217..92253 +
1680789997.5557961-CDS-P-littoralis_Contig204:92405..925031680789997.5557961-CDS-P-littoralis_Contig204:92405..92503Pylaiella littoralis U1_48CDSP-littoralis_Contig204 92406..92503 +
1680789997.5676103-CDS-P-littoralis_Contig204:101814..1019811680789997.5676103-CDS-P-littoralis_Contig204:101814..101981Pylaiella littoralis U1_48CDSP-littoralis_Contig204 101815..101981 +
1680789997.5799646-CDS-P-littoralis_Contig204:102399..1024951680789997.5799646-CDS-P-littoralis_Contig204:102399..102495Pylaiella littoralis U1_48CDSP-littoralis_Contig204 102400..102495 +
1680789997.6004815-CDS-P-littoralis_Contig204:102805..1029951680789997.6004815-CDS-P-littoralis_Contig204:102805..102995Pylaiella littoralis U1_48CDSP-littoralis_Contig204 102806..102995 +
1680789997.6098046-CDS-P-littoralis_Contig204:103147..1034331680789997.6098046-CDS-P-littoralis_Contig204:103147..103433Pylaiella littoralis U1_48CDSP-littoralis_Contig204 103148..103433 +
1680789997.619161-CDS-P-littoralis_Contig204:103689..1043031680789997.619161-CDS-P-littoralis_Contig204:103689..104303Pylaiella littoralis U1_48CDSP-littoralis_Contig204 103690..104303 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.42.4

>prot_P-littoralis_Contig204.42.4 ID=prot_P-littoralis_Contig204.42.4|Name=mRNA_P-littoralis_Contig204.42.4|organism=Pylaiella littoralis U1_48|type=polypeptide|length=496bp
MSKILVLVAVVVGACAALAASGFRGRQTVVGIDLGTTYSVIGVNEAGKIT
IIPGADGNPLLPSVVSFLENGRVAVGQDALKLLERQPANTIYGAKRFIGR
KFSDSAVSEEAAEHQFRVIEINQDRTEPWFEIKRSGHPPAVSPQVVGSHV
LGQLLRRAADYLGHSQVSKAVIAVPAKFDARQRAATVEAFRLAGLQVIRT
LEEPTAAALAFGLHRKPNVNHILVYDLGGGTLDVSLLFVNDGSVEVLGSD
GDDNLGGEVPAHIGDKNRIILFLKRCYHQRSPQATSHPIRHGSDFDQCVT
HELERKLEGSIVTLEEAEGAISCGFTTPTCAVHNLYPLSEGLRRLLTDGE
TAMLECMMLPEEARRRNLRSPDFKKGIPTEGKLKAENRESHDAHRSEGGG
EGGCGLWRPFSLDLTRAEYEHSCASLFDRGVAPVDRLLRYLDLRVDEIDE
VVMVGGMTRTPRVRSLLMSHLQVDRLNVDIDPDVVVAYGAATIAH*
back to top

mRNA from alignment at P-littoralis_Contig204:92136..104933+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.42.4 ID=mRNA_P-littoralis_Contig204.42.4|Name=mRNA_P-littoralis_Contig204.42.4|organism=Pylaiella littoralis U1_48|type=mRNA|length=12798bp|location=Sequence derived from alignment at P-littoralis_Contig204:92136..104933+ (Pylaiella littoralis U1_48)
GAGTAGCGATCTGGGATTGCACCTCCGTGTACCGTGTGCTCTTGGTGTGT
GCATACAGCAGTGCACACATTCGGGGGCGCCATGTCAAAGATATTGGTGC
TTGTTGCTGTCGTTGTTGGTGAGTTACATGGGTAGTGCTGCAGCGTTGGG
GGGGAGGGAGGAAGAAGACTGCATGAAACGTTTTCTCAAAACCATCCTCT
GCCCTAAAACGTCAAGTCCTTCCTTGATCACGAGGTTACGCTATCACACC
CACAACCAACCCTCGGACAGGTGCCTGCGCAGCTCTCGCTGCTTCTGGAT
TTCGCGGCCGGCAGACCGTGGTCGGTATTGATTTGGGCACGACTTACTCA
GTCATCGGCGTCAACGAGGTACAGCGGATGACTTTTGGTACGGGCGTCAA
AAAGAGCGGTTCGCCTCTGCTCTCCAATTCGCAAGCAGCGTGCAGAACAT
CGCATTAACGCACAGGCTTACCGGTACAGGTTTTGATGAAAAACATTCGA
TTGATCCGTGGCCCAATCCGACGTTGTACCTTCGATCCATCATGTAGTCG
AAATACGCCGTAACCGCTGTAAAATTGATTTCACGTATGATATGATATGA
TACTGCTGTTGAGTGTTGGATCTCCAAAAATTATCGCCATTGCTCTTTTC
TTGTACTCGAGTATCTTGTTCTACTTTTGTACAGCGTTGTGTGATTTCTC
GGGGTCCGTTTTTGTTTTTGCCGGAGTCTCCGTGTCGTGCCTTTACTTGG
TGGACTGAGGGTGGGGCCTACGTAATTTTTGTGGACTCGAACATCGAACA
TCGAACAAGCGGATAGTTCGATGTTCGACTTTTTCGGGTCCTTTGTAATT
TCGGAAAAGGCGAGTAAAAAAATCCCACACGCACACACACACACGCAAGT
GCTCCCCAATAGACCGGGCTGTCATATCGGTACGCAGCTGCTGCTGCTGC
TGCTGCTGCTACTGCTGCTGTGTGGTTGCGACAGGAAGCCACGCCCTTGT
GATTACGTTTCACCTGGCCCCGCTTGCGCACGCGGGGCCCTGGGACAGTC
GAAACCTCGCTGTCGCTCGGCATAGACACTTGTTTTGCGGCTATGCTCTG
CGGTCGTCTCTCTCTCTCGGTCGCCCGGTCGCCCTCTTTCTCTTGTCGTG
ATGTGACAGGGAGCGATAGACGCGGGTCTTCTTTTTTTGTCACCAATATT
TTTCGCCAATAGCCCACAGGACTGTAGGTTCGGTGTTGAATTTTCGAGTT
TTTGTGAAAGATGTTAAGAGTTTTAGGCGGAATCGCTCCTGGAAGATCCG
GCGTAGAAAAACTCGAACACCCCAACATCTTTTGTTTTATTTTATTTTCA
CGGCCAATCACATGATTACGCCGCTTGTTCGATGTTCGATGTTCGAGTCC
AAAAAAATTACGTAGGCCCCACCCGTAAATTTTTTGGACTCGAACATCGA
ACATCGAACAAGCGGCGTAATCATGTGATTGGCGGTGAGGTTCAAGAGTT
CGAAAGACGTAAGGGTGTTCGAGTTTTTCTACGCCGGATCTTCCAGGGGC
GATTCCGCCTAAAACTCTAACATCTTTCGCAAAAACTCGAAAACCTAACA
CCCAACCTACAGTCCTGTGGGCTATTGACGAAAGAAATTGGTGACAAAAA
AAGAGGACCCGCGTCTATTGCTCCCTCTCACATCACGACAGGAGAGAGGT
CGACCGGGCGACCGAGAGAGAGACGACCGCAGAGCATAGCCGCAAAACAA
GTGTCTATGTCGAGTGAAAGCGAGGTTTCGACTGATCCCAGGGCCCCGCG
TGCGCAAGCGGGGCCAGGTGAGACGCAATCACACGGGCGTGGCTTCCTGT
CGCAACCACACATCAACAGGAGGACTGTCAACTACCGATATGACAGCCCG
GTCTCCTGGGGAGCACTTGCGTGTGTGTGTACGTGTGGGATTTTTTTACT
CGCCTTTTCCGAAATTACGAAGGACCCGAAAAGTCGAACATCGAACTATC
CGCTTGTTCGATGTTCGATGTTCGACTTTTCCAAAAATTACGTAGGACCC
ACACTGAGGGTGGCTCTTATCAACGCGTTTTGGGCCCATTCAAAAGTCAA
AAATCAAATTTCAAGCCCAGAATATGTCACTGATGGGTCAACAATTCATC
CGCCCGCACCACGTTTTGGATTTCAGTTTTATTCTTCCGAAACGGGAAGG
AAAGTAAAAACACTTTCCTTCCCGCCAATAGATCAAAAACGCGGCTCAAA
AACGAATAGTCCTAGATTATGAGACAGAGAGGTGTTTGCTGTGCATTCCG
GGAGCACATGGTGCACACTACATATGTTTGCTTAGCTGACCACAGCACAA
CGTGTAGACCCCGGCCGTACACATGTGCTAGCTCCGGAGAAAGCTGGTAT
CACGCAGAATACAGATCACTTTGTTTGAGCGAATTTCGACCAGAATCCGG
AGAGCAGCACTCAGGGTGGCTCTTGTCCCCGCGGAATGCCCAAATCTAAA
ATCTAAAATGTTAAATCGAAATTCGATTTCGATTTTAGAAATGGGGTTGG
GTTCACGCAGCTTCAGCTGCGTTCATCTAAAATCTAAAAAGCGGAGATAC
AATAAAAAAAAAGGAAGAGGAACGACCAGCAAGTCAGAGGATAGACGGTC
GTGGAGTGCATGCAGTGACGATTGTTAAGCTAGTGCAGGAGCTACCATGC
CTCTAACGCAGTGCACGATAATGCCCTTAATCGGCCTGACTCAGGCGCGT
TGGTTGTCCTTAGTGTGAGATCGATAACCGAAAAAACTATGAAGAAATGT
GTGTTTGATTGCGTGTTGCTCACCAGCATACCCTACATACCCCTACTTGA
CCCTTTTCAGAGAGTCAACGAAGCCCACGCATTCATCCGTTGTTGTACAT
ATTCTCTGCAGAGCGACAGCATCTCGGCAGACTCCCCTCAGACAGAGTTC
CCTTCTTTGCAGTTGGCATTTACCATCTTCGTGTGGGGGAACCGTTTGTG
TACAACAGGCAGCTACAAGAAGTTGTGTTGTGAGGAAAAGCATAGCGGTG
TTGATATCGAAATGCACAGCAGCACCACGTATGTACATACTGGTATGAGA
GTCGTGAGCAATAACAGCAGTCGCTGCTGTCTGCACACTTCTGCACACTT
GAGTGGTGCTTTCCGGAATATTATCGGAATTCGCTCAAACAAAGTGAACT
GTATTATACGGGACACCAGCCTCCTGCCGAGGTCACACATACGTACAACA
GGGGGATACAAATTGGACCGTGACCAACTAAACAAAGACAAATCGATGTG
TACCGATGTGATCCCAGAATGCACAGCAAACACCTCTTTGCCCGTGTTCT
AGGTCTAATCGATTTTTGAGCCGCATTTTAGATTCTCACCTCGGATTTTT
TCGATTTTACCCTTTCCTCTAGCTTTTGAAATAATACGGGCAAAATCGAA
AATCTGCTGGATGCGCCGCATGTGCGGAGGGAAGTTTGGCCAACCAGTAG
CTTTTTAGGTTTCGATTTTCGATTTCGATTGGGTTTTTTCCGGGGACAAG
AGCCTCCCTCAAGTGTGTAGAAGTGGACAGGAAGTTTGTTGCTCAACTGC
TGTTTGCGTAGCTGACACAGCCGCTACCTCCAAAAAAAGGCAGATGTGCA
ACACGTACTTACTCATCTCTTACCGAGTTTTTCGGTAATCGATCTCAAAG
AAAGAACTACCAACGCGCCTGAGTCAGGGCGACGTGGGGCATCATCGTGC
TCTTCGTTTGAGGCACGACAGCTCCCGCACTTGTGTTGGAATCGAGACAC
GGCATGCTCGTATCACACACCACCTGTCTGTGACCCCTGTTTTTTTTTAT
GTATCCGCTATTGATTTTGAACAAACGCAAGCTGCAGCAGATCGGACCCA
TCACGGAATCAAAATCAAAATCCAATTTTGTTTTTGATTTTGAATACTTG
TACGGTCAACAATTTGACAAGAGCCACCCTGAGGTAAGAATTTCGGAAGT
GGTTTCGTTTGCTCATTTTTTTGGTTCATATGTTTTTTGCTCATATTTCT
GGAAAATATAGCCGGCACCGGTTTTTAAAATATGAGCAAATATCAGACGG
GAAGCGTTTGCTCATATTATTCCGGGTTTTGGAGCGTTAAAATATGAGCA
AACTGGTTCCCGCTCGTTTGCTCACATTGTTGAGCGGGAACACAGATTTT
TCTCGTTACTCGAAGTATCCAGGTTTCAGGTACCAGATATATACTCGGGC
TCACACAGGGCCCATTGGGCTAGTAGGGATGCTGATGGTTTATCGTACGT
ACCACCCCACAACCTCACATCGTGCTTTTGTGCGTTGTGCTCCTGGCCCA
CAAGATACCTCTAATTTTCTGTTTTACACGGCGCGCGGTGGGCGGTGGTG
CCATGAAACAACAACCAACGCAAGCAACAGAACAGCTTTAACAGCAGAAA
CACCGAACTCTTCCACTGTCTGCCAGACACCACCGCCTGGACACACCGCA
GCAAGCAGCAAGTGAGTAGTACAGCAGCAGCAGCAGTAGTATTGTGGTAG
TGGTGTGCATGAGATGGCAACCAACACAATCGCAGACGGGTGTGTGTGTG
GGTTGCGAGGTCGGGATGTTTGTTTATTGGATTGATTATGCTGCTGCTGC
TGTTGCTTGCTCTGTCCATATGATCACGTCATGTTGATGATGCAGCATTT
TTTATTTTTTCCATTTCTTCGCATCATCCACTTCTTCCTCGGAAACACAC
ACACAACACACGATGCATACACATCCATACCATGCCAAACACACAGCAGA
CACACCATCACAACACAAAACATACACCCGCCTCATATGCTAGTTCACCT
CCAGCATACACACTGACTCTGGTGTGCAGCAGCCGGAGGAGGAGTAGAGT
AGTGTGAAAAGTGTGTGTGAACTTGAACTCTGTACCCTCTACTAGTATTT
TGTACGAAATACTTCGATGATATCACACGAATCTGCTTCTTCGGAAAAAT
AAACGGAACGCACACACACTTCACAGCAGACCACACAAACATGAGACAAC
ACTTTAGCTGTGcttgagaCTTGAGATACGAGTACACCACCGGCACGCAC
TGACTGTAAGGTGTGGTCGTGTGTCTGTGTGTGTGCTGTTGTTGGTTCTG
TGTGCGCGAGTGATCTCGGCCGGATGGATGCCTCCCTTTGCTCTCTGCAT
TCGCTTTTTTTGTCTCCATAATCCATGTTCGTATCATACAGCAGCAGGAC
CGCAGGACCTTCACAGACCGGACGACCACAGAGACTTTTTTTTTTCTACA
GCGCCAGGGCAAAATATGCTGCGAATCTGTACGCCAATAACCATGTCGCA
GGTGGCCACGTCGTTTTTAGTCTCGCCGCCTATAAAATGTGAGCAAACTC
GCTGGTTGTTTTTTACTCCAATGATATATTTGTGTGAGCAAATAATATGA
GCTAAAATTCGAAGCAGTTCGACAAGGAACTTAAACCTCGCTTCGCTCGT
GGCCTGCTTCTCAACATCAATTGATGAAGACAGCAGTACGTAGTAGTAGC
AGGAGACGAACATTAGATGTACAGCGAGCATGTCCGTCAAGTACACCAAC
CTAACCTAGCATCTGCGCCAAGCGCACCAACCTAGCACACTCGCCACGCA
CACCAACCTAGCATATCTGCCACACACACCAACCTAGCATATCCGCAAGG
CACACCAACCTCGCATATCCGCCACGCACACCAACGTAGCATATGCACCA
GGCACACCAACCTAGCATATCCGCCAGGCACACCGACCTAGCTTTTTCGC
CAAGCACACCACCCTAGCAATCTGCCAAGCACACCAACCAAGCATATCCG
CCAGGCATACCAACCTAGCTGTTCTCTACGGGTTTTGGGTTGGGGTTGGG
GTTGGAGTTAGGGTGACTACATACTTCGTATTTTACAATGATAGAACAGC
ACCAGCAGCAGCAGCAAGCAGCAGAAATAAGGTGGAGGCGCACCTCTTGG
ATGCGCGCCCCTGGAGGGGGACGGAATTTTTCTGAGAAATAATTCCATCC
CCCGCCCGGGGGCGCAGCATCCAAGAGATGCGCCCCCAACCAAAATAAAT
TAATTCAAAGCAGAAAAAGCACGAATTGCTCACTTGGCGCAGAGCAGTGA
TGGGTATCAAATCATATCGTCTAAAACATATCGGCATATCGCCGGCGATA
CGGGCATATCGATATCGTGAATATTGAAGGCGATGTGCCGATACGTTATT
TTCATCCACGGGTACCCTTTTCCCCACCCACCCCCTGTTTTTCTTTCTTT
GGCGCCCCCGTGGCCCCTAACTCTCCACGTGGTCAGGAACCGAAATCGCC
GGATATCGAGGCCGAGATCGATCAAATCGACGAATATCGATATCGTGTCA
AGAATTTATAGTGTATCGCGTAATATCGGCCACTTTCTCAAATATCGGCA
AAATATCAGATTTCACCTTTTTTTTTGCCGAAAAAAAAATATGGCATAGA
GCTGTTTTTTAATTGATATCCATCACTGGCGCAGAGCAAAGCAGTAGGTT
TCGACACTTGACACAGTACAGGTGCAGCAAGACACTTTCGTGGGAATCGG
TATGAGTGTCAACAGCACAAGAATAGACCGTACTTCGTACTATCATACGG
AGTATGATACTCAACATATGATGTAACGTGTGTACGGTAACACAAGACGA
CAATCGAATTATCTTGTTGATCCTGATAACCTCAGGGAAGCTGCAACGGT
TCACTATCTGATGAGTCGAGAAGCACGGGTAGATGTGTATGTTGTATATT
ATTCTTTGTGTTCGCTGCAATATCTACTCCGGATTCTCGTCGGGGAGAGG
CGAATACATTATTGTGTTTGAAAAAAAAAATGATACACAGCGGTATGATA
AAATACTTCGACATATTTACACTGCTGTCGGTGAGCTTTTGGGCTGATGA
ACGAATGCAGAAATGTCACATATTCATGAAATTTGACACACTTGGGCTGC
TTTTTGTAGGTCGGAATCCCCTTATCACAATTCGCTTTTTATTACCTTGG
GCGCTGGGAGGCGATCTTCTAGGCCAGAAAACCCCTTTTTTAATCTGAAC
TTTCCCTATAACTTTTCTAATGGAGCCACAGCAATACCAAAGCCATCGCC
CGTGAGCTGTGTGTCTGGTCCTTCTCCTCCGCTGATCATCTGAGGCCGGA
AGGCATCAATAGCTGACAACGGAAGCGTTGGAGAAATCGATGAGCTGTGA
AATGTTTTGAGAAAGAAAGGCCGTTGATGCAGCGAGTCCAGCAGACAGAC
AGATAGACGGTGATTTCTTCTTCTTTTTCACAAGTGATCGATTTCTGCAA
CGCCTCTGTTGCTAGTCTGTTTGCTTTGTGGCCCCAGACGACCACCGGAG
GAGAAGTACCAGACACACAGCTCACGGGCGATGGCTTTGGTGTTGCTGTG
GCTCAATTGGTTCAGAGTGATGGATGAAAAACAAAACTGGTGTACCGGTG
CATAATACCTTACTGCTTCCTGCTGCTGCTGCGGGCTTCCTTGTCTTTCC
TTTTTCCTTTTTTCTTCACACGGCATTAATGCCTGCAAGCTTTTTTTGTG
AGCCTGTTTATGCCTAACGGCTTCAAACAACCATGGGAGGAACACGACCA
TTCACACAGCTCACGGGTTATGGCTTTGCTATTGCTGTGGCTTCATCCCT
TCGAGAGTGATCAACAAATACTCTGCAGCCTGCTGACGAAATAATGTCAA
CCTTCTGCCCGTCTGTCAAGTATCGAATAGCCACAGAAGGGAGATGTATT
TTCGGAAGATATAAAAAAAATTAATCACCCATGAAAAAAACAAAATTGCC
TGCGGTCTCTTATAAGAAGCGATGCTTCCAAAAATCCTGCTGGAATTGTT
CTTATTGAATAACGCGGGTTCGGATGAGGGCGTTTCCGATCTACAACAAA
GCCTTAGGCTCTTTTTAATCAGGCCTGATTTCAAGGAAACCTTTTTTTTC
AAGGAGCACAAACCTTGAAAATACCTCCGTTCTAAACTAACAGACGATGG
TGCTTTTTTGTTGTAAAATGTAAAATCAAAATCAGTTTATTCCACAACAG
CAGACAGCAACAGAGACTGAAGACCTCCCAAGTCCTCATTCTTGCGAAAC
GGAGGTCTACAATATAGTGACCCTCGATTTTTTGGCCTTTACGTGGTTGT
CGTAGCTCGTGTGAAATCCAACGAGGGTCGCAGGAGGGTCGCAAGAAGAT
GATATGTGCTGTGGACGCTTCCAAATCTCACTGGTGGTTTGGTTTCAGTC
ACAAGCTTCAATTCACGGTATCACACAGCATCAGAGCTACAAGGCCTCTG
AACTCCTGATTCTTCCGAAACGGGCGTCTACATGATAGTGGCCCTCGACA
ACGCTTGCGCTACGCGGTCGTCACAGCTTGTTTGCTGGCTTTAAAGGGGT
TACCAGGAGGGTGTGTCTTGGCGCAGCAAAAAAAAGGGGCAGATAAGCGG
TGAAATAAACGATTCCGATTCCTTTTCGTCTCTTCTGCTGTAATTTTTTT
ACCAACTTATCACCACGCCTTCCGGCTTGTGCAAAGCGGGAGTGGGCTTT
GCTTGCCGGAGTGATTATCTCGGGTACCCTGCTCTTTCTTTTGCTTTCTG
TACTGCTGTTGCTGCTGTAGGGCGAGGTTGGTTTGTGTTGGCTACGTTGC
TGGAAAAGGCTGAAAAAAACGTTTCCTTGTAATTGAATATTCGCGAATTT
TTTTCCGCCGCTCATTTTCCCGTTTGGGGAAAGAAAGCCTTCGAATTGTC
GGCGATTTCACCCTTCTTTTAATAAAACGGTCGCCTTGAAATCAGGCCAC
CTGATTAGAAAGAGCCTTATGAACCCGCTGAGGAGAGGGCTGACGTTTTG
AGGCACGTAAAACCAGTTTCAGTGGAGTTCAGGCTGCTGTGGCACTGCTT
CCGTAGAGTTTTGCGCGGTTGTTGCTCATTTGTCCAAATGTAAACGTAAG
TGTTGGTGTCCTGCTGCCGAAAGTGTTGATCCTTGTTACTCCCACACCTG
TACGAAGTATGAGGAGAGCGCTGTCGGTTTTAACGCCGGAAAGACACGTG
GCACCACAACTTAAGTCAATGAGGCTGCAAATTGTATACCTTTCCTTCAA
ATGGAGGTAATCAGGGCAGCTATGCTAACTGTCGAGGAACGAATCTTGAT
ATCAATCTATCTTTTTCGGGTGGGGGGGTGATATTATGGAAAACGTGGGG
TTATGTTGGTATTATCAAACCCTCTGAAACCATATTTGCGGTAAAACTTC
CTCTTCGGGACATATTTTTGGGCAAAACGTTCGCGTCTACCTTGGTTCCC
TATATCTTGTCGGACCACTCCCCCCAATCTGCTTTGACTCACAAAGTCAT
CGACCACCGGTACCCGGTCTCTACCACCTTGTGCAATATTTTGCGCGCAT
GGGTGTTTATTCTGGCAAACCTCGTTTGAACCATCACCACAGGTAAGCAG
ACTCACTTCCCTTGTGAGTCCTGTGAGTTCCAGTTGGGCGCTCCTTCTTT
TCTGTTACTGAACTTCAGCTCGCAGATATGACATGCGCCCATTGAGTTGT
CCTGCATGTTGCAGTGTTCGTTCGAATGGAGTTGCCCTTCCCGCCGCGTG
TATGCATGCGCGCACCACATTTTTCGAAGGCTGGGAAAATCACTATTATT
CCCGGAGCAGACGGAAACCCTCTCCTCCCATCGGTAGTCTCATTTTTGGA
AAATGGGCGTGTAGCAGTCGGACAAGACGCCTTAAAGCTGCTGGAGCGCC
AGCCGGCGAACACTATCTACGGCGCCAAAAGATTTATTGGACGGAAGTGA
GTTCAGCATTTAATTCCATGGATGTGAAGTGTCCTTTGTCTAGACTGCAG
TTGGCGTGATCGATCTCTGTGTGTTCTCGTACAACCTGTGCATGCAAACC
ACCCACCGCTCAGCGTTGACGCGTAGTCGATGGAGAACGTTTAGATCGTG
CTTAATCGGTCTTCCCAGGGTAGAGACAAGAGAGATTGACCTCGGGGAGC
ACACACACGCCCAGGAGTCATGCGCCACAATACCAATAGCCCGTCTAACC
GTAACGCAACCGTCACTCTGAAAAATCACACCGACTTCTAGAGACACAAT
CGTCCGACGTGCACCTTCTTTCAATGTATTTTCACAAACGCTCACCTCAC
GCTGGTTTGATTCTTCTATAACATCATTCCACATGCTATGCTTGGGTTTT
GGCATACGCCGCAGGTTCTCTGACAGCGCCGTCTCCGAGGAGGCAGCAGA
GCACCAGTTCCGAGTCATCGAAATCAACCAGGACCGTACCGAGCCGTGGT
TTGAAATCAAGTGAGAAGATATGCATACCATGTGTAGATGAAGACATGTA
AATACACTCACGTGATAAGCCAAAGCACTGAGTCACTCTTACACTTTGGC
GTCCATGGTTTTGCATCGTCCGCGGAGGGGATCCACCGTGTTGTTTATTT
TGGAGTTGGAAAAATGCGCGTCCCCTTTGCAAACGAATGTAGTGAACCAC
CGCTTTTTTCCACGCAAACAAAGTGGAAATCAGACGTTGGTCGGCCGTCA
ACTTCTGAGAATACAACCAATGATTTCCTGCTCCCGGGAATTCTATTTCG
ACCGTGCTGTACGTCTGCAGGCGCTCGGGGCACCCTCCTGCTGTATCTCC
GCAGGTTGTTGGGTCCCACGTGCTCGGTCAGCTACTTCGAAGAGCCGCGG
ACTATTTAGGACACTCACAAGTTAGCAAGGCGGTAATCGCAGTCCCGGCG
AAGTTCGACGCACGTCAGAGAGCAGCCACAGTGGAGGCTTTTCGTTTAGC
AGGGCTCCAGGTGTGTTTGGTATCGCTTTTGTGGTGAACATTTCCGAGGA
ACAGTACTGGTGTAACTAGAGTGCATCGGGTGCGCAACTGCCGCCGTCGG
TGAACGCCCTGTCTGTCTTGTCCGAATGCACGGTAAATTCGCCCTATCTC
TCTTTTGAACAGGTTATCCGAACACTTGAAGAGCCAACAGCGGCAGCCCT
GGCTTTCGGCCTTCATCGCAAGCCGAACGTGAACCACATCCTCGTTTACG
ACTTGGGTGGTGGCACGCTAGATGTGTCGCTTTTGTTCGTAAACGATGGT
TCTGTGGAGGTCCTCGGGAGCGACGGAGACGACAACCTCGGCGGTGAGGT
TCCTGCGCACATCGGCGACAAAAATCGCATAATATTGTTTTTAAAGCGAT
GCTACCATCAGCGCTCGCCACAAGCCACTTCACACCCGATTCGTCATGGT
ACGAATACGCGTTAATGTTTCGTTGTTTGCAGCTCAGGTATTCACGAAGT
GTTTGAAAGCAGTCGGACCCAATTGTATATCCTTGCGCCCTGCGCCTTAG
ATTTTGCAAGCCTCCGTCGAACCATAATGATTCAGTCAACGAAGCAGGTG
AGCAGGTGCCTCATGTTACGCATCTTGGTGTTCTTTTGCACACATCCTTC
GGTCAGCATCTCCCGCCCATGGCTCGGTTTCACTTTGTGCTCGGTCACGA
TCAGGGTCCGACTTCGATCAATGCGTGACCCACGAGTTGGAGCGCAAGCT
TGAAGGAAGCATAGTTACGCTGGAGGAGGCCGAGGGCGCAATATCGTGCG
GCTTTACGACGCCGACGTGCGCAGTTCACAACCTCTATCCGCTCAGTGAA
GGACTGCGGCGTCTTCTCACGGATGGGGAGACCGCCATGCTTGAGTGCAT
GATGCTCCCCGAGGAAGCCCGGCGACGAAACTTGCGGTCGCCAGACTTCA
AGAAGGGGATCCCCACCGAAGGAAAGCTAAAGGCCGAAAATAGGGAGAGT
CACGATGCACATCGTTCTGAGGGGGGGGGAGAGGGTGGTTGCGGATTGTG
GAGGCCGTTTAGTTTAGACCTCACCAGAGCGGAGTATGAACACAGCTGTG
CATCTTTGTTTGATCGCGGTGTAGCCCCGGTAGATCGTCTGCTGAGATAC
TTGGATTTGAGGGTTGATGAGATCGACGAAGTGGTAATGGTAGGAGGGAT
GACACGAACACCCCGGGTGCGAAGTTTACTCATGTCACACCTTCAGGTGG
ACCGATTAAATGTCGACATTGACCCGGACGTTGTGGTTGCGTACGGCGCG
GCAACTATCGCACATTGAGGGCTCGTTTGGAGTCCTGTTGAACTCAGTGT
GGATTTGCTTGGAATGTTGGATTAAATGCGGGCACCTTTGCATGGAGTTT
CCATCAGATCAACACGATGGGCTTGCCCATTAGGCACCAGGATTGCCTTA
GTTGGAAGACTATCCTTTCCCATCATGTCACCATATAACCATCTTCGTAT
GTGCTTGTATAGCGGATCAAAAACCGTAGTTTTCACCGTGGATCCATCCC
TCTAGCAAACACCTGTATAAACGCTGATGTCTACGAAAACAGGAGATCGG
GCCGGTTGTCTCGCAAAGGCGAGGCATGGTTGTCACGAAGTCGTTGGCCT
TTCGGTACTCCTGAATGGCTAAAACTCTTTTATCATGTGGCTTTTTATGG
AGTTCCGGCGAGATTTTTGAAATATGCGCCTGAAAAAAGCCATGCGCAGA
AACATCACTGCTTCCGTAAGTGCTGACTTCTGCGGAATTTGGAATTTTTC
AATAATTTTCTGTTCACTTGGGTTCCTTCCAAGACGCTAGTACCGAGATT
GTTTTTCGTACATTAGTACGCTCTCGTTACACCTGTATACGGGCAAAAAA
ATGTGCCTTTGCTGCGGTAGAAAGCCTTCTGATCGTCTGCGGTACACG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig204:92136..104933+

>mRNA_P-littoralis_Contig204.42.4 ID=mRNA_P-littoralis_Contig204.42.4|Name=mRNA_P-littoralis_Contig204.42.4|organism=Pylaiella littoralis U1_48|type=CDS|length=1488bp|location=Sequence derived from alignment at P-littoralis_Contig204:92136..104933+ (Pylaiella littoralis U1_48)
ATGTCAAAGATATTGGTGCTTGTTGCTGTCGTTGTTGGTGCCTGCGCAGC
TCTCGCTGCTTCTGGATTTCGCGGCCGGCAGACCGTGGTCGGTATTGATT
TGGGCACGACTTACTCAGTCATCGGCGTCAACGAGGCTGGGAAAATCACT
ATTATTCCCGGAGCAGACGGAAACCCTCTCCTCCCATCGGTAGTCTCATT
TTTGGAAAATGGGCGTGTAGCAGTCGGACAAGACGCCTTAAAGCTGCTGG
AGCGCCAGCCGGCGAACACTATCTACGGCGCCAAAAGATTTATTGGACGG
AAGTTCTCTGACAGCGCCGTCTCCGAGGAGGCAGCAGAGCACCAGTTCCG
AGTCATCGAAATCAACCAGGACCGTACCGAGCCGTGGTTTGAAATCAAGC
GCTCGGGGCACCCTCCTGCTGTATCTCCGCAGGTTGTTGGGTCCCACGTG
CTCGGTCAGCTACTTCGAAGAGCCGCGGACTATTTAGGACACTCACAAGT
TAGCAAGGCGGTAATCGCAGTCCCGGCGAAGTTCGACGCACGTCAGAGAG
CAGCCACAGTGGAGGCTTTTCGTTTAGCAGGGCTCCAGGTTATCCGAACA
CTTGAAGAGCCAACAGCGGCAGCCCTGGCTTTCGGCCTTCATCGCAAGCC
GAACGTGAACCACATCCTCGTTTACGACTTGGGTGGTGGCACGCTAGATG
TGTCGCTTTTGTTCGTAAACGATGGTTCTGTGGAGGTCCTCGGGAGCGAC
GGAGACGACAACCTCGGCGGTGAGGTTCCTGCGCACATCGGCGACAAAAA
TCGCATAATATTGTTTTTAAAGCGATGCTACCATCAGCGCTCGCCACAAG
CCACTTCACACCCGATTCGTCATGGGTCCGACTTCGATCAATGCGTGACC
CACGAGTTGGAGCGCAAGCTTGAAGGAAGCATAGTTACGCTGGAGGAGGC
CGAGGGCGCAATATCGTGCGGCTTTACGACGCCGACGTGCGCAGTTCACA
ACCTCTATCCGCTCAGTGAAGGACTGCGGCGTCTTCTCACGGATGGGGAG
ACCGCCATGCTTGAGTGCATGATGCTCCCCGAGGAAGCCCGGCGACGAAA
CTTGCGGTCGCCAGACTTCAAGAAGGGGATCCCCACCGAAGGAAAGCTAA
AGGCCGAAAATAGGGAGAGTCACGATGCACATCGTTCTGAGGGGGGGGGA
GAGGGTGGTTGCGGATTGTGGAGGCCGTTTAGTTTAGACCTCACCAGAGC
GGAGTATGAACACAGCTGTGCATCTTTGTTTGATCGCGGTGTAGCCCCGG
TAGATCGTCTGCTGAGATACTTGGATTTGAGGGTTGATGAGATCGACGAA
GTGGTAATGGTAGGAGGGATGACACGAACACCCCGGGTGCGAAGTTTACT
CATGTCACACCTTCAGGTGGACCGATTAAATGTCGACATTGACCCGGACG
TTGTGGTTGCGTACGGCGCGGCAACTATCGCACATTGA
back to top