mRNA_P-littoralis_Contig204.36.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.36.1
Unique NamemRNA_P-littoralis_Contig204.36.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: D7FN46_ECTSI (50S ribosomal protein L5, chloroplastic n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN46_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 1.070e-112
Identity = 168/172 (97.67%), Postives = 169/172 (98.26%), Query Frame = 1 
Query:    4 AETKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIVTG 519
            AE KTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDF+VVLNRPGYRVAKRKAK AKIGYQHKVTK DAVKWFQAKFEGIVTG
Sbjct:    2 AEIKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFFVVLNRPGYRVAKRKAKCAKIGYQHKVTKTDAVKWFQAKFEGIVTG 173
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BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: B7GB09_PHATC (50S ribosomal protein L5, chloroplastic n=3 Tax=Bacillariophyta TaxID=2836 RepID=B7GB09_PHATC)

HSP 1 Score: 281 bits (719), Expect = 1.010e-90
Identity = 133/170 (78.24%), Postives = 155/170 (91.18%), Query Frame = 1 
Query:    4 AETKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            +ETKTN MR++KVDKL+LNC VGESGDRLTRAA+VLEQLTGQ PV+SKARYT+RSFGIRRNEKIA HVTVRG+KALEILERGLKVKEYEL +KNFS+TG+FGFGI EHIDLG+KYDP+TGIYGMDF+V L RPG RVA+RK +  +IG+ HK+TK D++KWFQ KFEG+V
Sbjct:    2 SETKTNAMREIKVDKLILNCCVGESGDRLTRAARVLEQLTGQQPVFSKARYTLRSFGIRRNEKIAVHVTVRGEKALEILERGLKVKEYELLQKNFSDTGNFGFGINEHIDLGIKYDPTTGIYGMDFFVCLTRPGARVARRKIRQGRIGFNHKITKEDSIKWFQDKFEGVV 171
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BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: A0A1Z5JJ06_FISSO (50S ribosomal protein L5, chloroplastic n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JJ06_FISSO)

HSP 1 Score: 281 bits (719), Expect = 1.050e-90
Identity = 134/170 (78.82%), Postives = 153/170 (90.00%), Query Frame = 1 
Query:    4 AETKTNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            AETK NPMRD+KVDK+V+NC VGESGDRLTRAA+VLEQLTGQ PV+SKARYT+RSFGIRRNEKIA HVTVRG+KALEILERGLKVKEYEL  KNFS TG+FGFGI EHIDLG+KYDP+TGIYGMDF+V LNRPG RV++RK +  ++G  HK+TK DA+KWFQ KFEG+V
Sbjct:    2 AETKANPMRDIKVDKMVINCCVGESGDRLTRAARVLEQLTGQQPVFSKARYTLRSFGIRRNEKIAVHVTVRGEKALEILERGLKVKEYELLDKNFSETGNFGFGINEHIDLGIKYDPTTGIYGMDFFVCLNRPGTRVSRRKIQQTRMGKNHKITKQDAIKWFQDKFEGVV 171
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BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: A0A0D3AUD9_BRAOL (Uncharacterized protein n=10 Tax=Brassicaceae TaxID=3700 RepID=A0A0D3AUD9_BRAOL)

HSP 1 Score: 280 bits (717), Expect = 2.490e-90
Identity = 133/166 (80.12%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            +NPMRD+KV KLVLN SVGESGDRLTRA+KVLEQL+GQ+PV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMRDIKVQKLVLNISVGESGDRLTRASKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: A0A0J8BKL6_BETVV (Uncharacterized protein n=6 Tax=Chenopodiaceae TaxID=1804623 RepID=A0A0J8BKL6_BETVV)

HSP 1 Score: 280 bits (717), Expect = 2.490e-90
Identity = 133/166 (80.12%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            +NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQ+PVYSKARYTVRSFGIRRNEKIAC+VTVRG+KA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVYSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
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BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: A0A0K9NLH5_ZOSMR (60S ribosomal protein L11a n=1 Tax=Zostera marina TaxID=29655 RepID=A0A0K9NLH5_ZOSMR)

HSP 1 Score: 280 bits (715), Expect = 4.660e-90
Identity = 134/171 (78.36%), Postives = 157/171 (91.81%), Query Frame = 1 
Query:    4 AETK-TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            AE K +NPMR++KV KLVLN SVGESGDRLTRA+KVLEQL+GQSPV+SKAR+TVRSFGIRRNEKIACHVTVRG+KA++++E GLKVKEYEL RKNFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    2 AERKQSNPMREIKVQKLVLNISVGESGDRLTRASKVLEQLSGQSPVFSKARFTVRSFGIRRNEKIACHVTVRGEKAMQLIESGLKVKEYELLRKNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRAKARVGIQHRVTKDDAMKWFQVKYEGVI 172
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BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: A0A1S4CT55_TOBAC (60S ribosomal protein L11-1-like n=4 Tax=Nicotiana TaxID=4085 RepID=A0A1S4CT55_TOBAC)

HSP 1 Score: 280 bits (715), Expect = 4.820e-90
Identity = 133/166 (80.12%), Postives = 153/166 (92.17%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            +NPMR++KV KLVLN SVGESGDRLTRAAKVLEQL+GQSPV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSETGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
[Close]
BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: A0A7S2V4A8_9STRA (50S ribosomal protein L5, chloroplastic n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4A8_9STRA)

HSP 1 Score: 279 bits (714), Expect = 5.370e-90
Identity = 135/165 (81.82%), Postives = 151/165 (91.52%), Query Frame = 1 
Query:   19 NPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            NPMR ++VDKLVLNCSVGESGDRLTRA KVLEQLTGQ+P  SKARYTVRSFGIRRNEKIACHVTVRG+KALEILERGLKVKEYEL+R+NFS TG+FGFGIQEHIDLG+KYDPSTGIYGMDF+VVL RPG RV KRKA+ +++G  H++ K DA+KWFQ KFEGIV
Sbjct:    8 NPMRAVQVDKLVLNCSVGESGDRLTRAIKVLEQLTGQTPCVSKARYTVRSFGIRRNEKIACHVTVRGEKALEILERGLKVKEYELRRRNFSETGNFGFGIQEHIDLGIKYDPSTGIYGMDFFVVLRRPGNRVGKRKARQSRMGAPHRLAKDDAIKWFQQKFEGIV 172
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BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: UPI00053C97D5 (60S ribosomal protein L11-1-like isoform X1 n=2 Tax=Tarenaya hassleriana TaxID=28532 RepID=UPI00053C97D5)

HSP 1 Score: 279 bits (713), Expect = 1.030e-89
Identity = 132/166 (79.52%), Postives = 154/166 (92.77%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            +NPMRD+KV KLVLN SVGESGDRLTRAAKVLEQL+GQ+PV+SKARYTVRSFGIRRNEKIAC+VTVRG+KA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRVA+R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    9 SNPMRDIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVFSKARYTVRSFGIRRNEKIACYVTVRGEKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVARRRRCKARVGIQHRVTKEDAMKWFQVKYEGVI 174
[Close]
BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Match: A0A394D9K8_LUPAN (Uncharacterized protein n=5 Tax=Pentapetalae TaxID=1437201 RepID=A0A394D9K8_LUPAN)

HSP 1 Score: 278 bits (712), Expect = 1.370e-89
Identity = 132/166 (79.52%), Postives = 153/166 (92.17%), Query Frame = 1 
Query:   16 TNPMRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFGIRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQEHIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKIDAVKWFQAKFEGIV 513
            +NPMR++KV KLVLN SVGESGDRLTRAAKVLEQL+GQSPV+SKARYTVRSFGIRRNEKIAC+VTVRGDKA+++LE GLKVKEYEL R+NFS+TG FGFGIQEHIDLG+KYDPSTGIYGMDFYVVL RPGYRV +R+   A++G QH+VTK DA+KWFQ K+EG++
Sbjct:    8 SNPMREIKVQKLVLNISVGESGDRLTRAAKVLEQLSGQSPVFSKARYTVRSFGIRRNEKIACYVTVRGDKAMQLLESGLKVKEYELLRRNFSDTGCFGFGIQEHIDLGIKYDPSTGIYGMDFYVVLERPGYRVGRRRRCKARVGIQHRVTKDDAMKWFQVKYEGVI 173
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.36.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN46_ECTSI1.070e-11297.6750S ribosomal protein L5, chloroplastic n=2 Tax=Ec... [more]
B7GB09_PHATC1.010e-9078.2450S ribosomal protein L5, chloroplastic n=3 Tax=Ba... [more]
A0A1Z5JJ06_FISSO1.050e-9078.8250S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
A0A0D3AUD9_BRAOL2.490e-9080.12Uncharacterized protein n=10 Tax=Brassicaceae TaxI... [more]
A0A0J8BKL6_BETVV2.490e-9080.12Uncharacterized protein n=6 Tax=Chenopodiaceae Tax... [more]
A0A0K9NLH5_ZOSMR4.660e-9078.3660S ribosomal protein L11a n=1 Tax=Zostera marina ... [more]
A0A1S4CT55_TOBAC4.820e-9080.1260S ribosomal protein L11-1-like n=4 Tax=Nicotiana... [more]
A0A7S2V4A8_9STRA5.370e-9081.8250S ribosomal protein L5, chloroplastic n=1 Tax=Fi... [more]
UPI00053C97D51.030e-8979.5260S ribosomal protein L11-1-like isoform X1 n=2 Ta... [more]
A0A394D9K8_LUPAN1.370e-8979.52Uncharacterized protein n=5 Tax=Pentapetalae TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:86696..91323 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FN46
Preferred nameRPL11
PFAMsRibosomal_L5,Ribosomal_L5_C
Model size1316
Max annot lvl2759|Eukaryota
KEGG koko:K02868,ko:K10523,ko:K15076
KEGG Pathwayko03010,ko04340,ko04341,map03010,map04340,map04341
KEGG ModuleM00177,M00384
Hectar predicted targeting categoryother localisation
GOsGO:0000027,GO:0000184,GO:0000956,GO:0002181,GO:0003674,GO:0003676,GO:0003723,GO:0003735,GO:0004857,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005783,GO:0005789,GO:0005791,GO:0005829,GO:0005840,GO:0005844,GO:0006139,GO:0006355,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006412,GO:0006413,GO:0006518,GO:0006605,GO:0006612,GO:0006613,GO:0006614,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006996,GO:0008097,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009889,GO:0009892,GO:0009893,GO:0009894,GO:0009895,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0010647,GO:0010941,GO:0010942,GO:0012505,GO:0015031,GO:0015833,GO:0015934,GO:0015935,GO:0016020,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0019219,GO:0019222,GO:0019439,GO:0019538,GO:0019843,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0022625,GO:0022626,GO:0022627,GO:0023051,GO:0023056,GO:0030162,GO:0030234,GO:0030867,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031329,GO:0031330,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031625,GO:0031647,GO:0031974,GO:0031981,GO:0031984,GO:0032092,GO:0032268,GO:0032269,GO:0032434,GO:0032435,GO:0032991,GO:0033036,GO:0033365,GO:0034470,GO:0034504,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034655,GO:0034660,GO:0042175,GO:0042176,GO:0042177,GO:0042254,GO:0042255,GO:0042273,GO:0042788,GO:0042886,GO:0042975,GO:0042981,GO:0043043,GO:0043065,GO:0043067,GO:0043068,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0043433,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044092,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044267,GO:0044270,GO:0044271,GO:0044389,GO:0044391,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044432,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0045047,GO:0045184,GO:0045861,GO:0046483,GO:0046700,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0050789,GO:0050790,GO:0050794,GO:0050821,GO:0051090,GO:0051098,GO:0051099,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051246,GO:0051248,GO:0051252,GO:0051338,GO:0051348,GO:0051438,GO:0051444,GO:0051641,GO:0051649,GO:0055105,GO:0055106,GO:0060255,GO:0061136,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0070972,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0072594,GO:0072599,GO:0072657,GO:0080090,GO:0090150,GO:0090304,GO:0097159,GO:0098552,GO:0098554,GO:0098556,GO:0098562,GO:0098588,GO:0098772,GO:0098827,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901796,GO:1901798,GO:1901799,GO:1902253,GO:1902255,GO:1902531,GO:1902533,GO:1903050,GO:1903051,GO:1903320,GO:1903321,GO:1903362,GO:1903363,GO:1903506,GO:1904666,GO:1904667,GO:1990904,GO:1990948,GO:2000058,GO:2000059,GO:2000112,GO:2000434,GO:2000435,GO:2001141,GO:2001233,GO:2001235,GO:2001242,GO:2001244
Exons6
Evalue5.19e-113
EggNOG OGsCOG0094@1|root,KOG0397@2759|Eukaryota
Ec32 ortholog descriptionRibosomal protein L5
Ec32 orthologEc-06_008360.1
DescriptionrRNA binding
Cds size498
COG categoryJ
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko03400,ko04121
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.36.1prot_P-littoralis_Contig204.36.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 87551..91299 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789997.3932834-UTR-P-littoralis_Contig204:86695..869501680789997.3932834-UTR-P-littoralis_Contig204:86695..86950Pylaiella littoralis U1_48UTRP-littoralis_Contig204 86696..86950 -
1680789997.4076242-UTR-P-littoralis_Contig204:87011..875501680789997.4076242-UTR-P-littoralis_Contig204:87011..87550Pylaiella littoralis U1_48UTRP-littoralis_Contig204 87012..87550 -
1680789997.4850807-UTR-P-littoralis_Contig204:91299..913231680789997.4850807-UTR-P-littoralis_Contig204:91299..91323Pylaiella littoralis U1_48UTRP-littoralis_Contig204 91300..91323 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789997.4166229-CDS-P-littoralis_Contig204:87550..875801680789997.4166229-CDS-P-littoralis_Contig204:87550..87580Pylaiella littoralis U1_48CDSP-littoralis_Contig204 87551..87580 -
1680789997.4303854-CDS-P-littoralis_Contig204:87795..879261680789997.4303854-CDS-P-littoralis_Contig204:87795..87926Pylaiella littoralis U1_48CDSP-littoralis_Contig204 87796..87926 -
1680789997.4416678-CDS-P-littoralis_Contig204:89807..899581680789997.4416678-CDS-P-littoralis_Contig204:89807..89958Pylaiella littoralis U1_48CDSP-littoralis_Contig204 89808..89958 -
1680789997.4510329-CDS-P-littoralis_Contig204:90266..903281680789997.4510329-CDS-P-littoralis_Contig204:90266..90328Pylaiella littoralis U1_48CDSP-littoralis_Contig204 90267..90328 -
1680789997.4705517-CDS-P-littoralis_Contig204:91175..912991680789997.4705517-CDS-P-littoralis_Contig204:91175..91299Pylaiella littoralis U1_48CDSP-littoralis_Contig204 91176..91299 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.36.1

>prot_P-littoralis_Contig204.36.1 ID=prot_P-littoralis_Contig204.36.1|Name=mRNA_P-littoralis_Contig204.36.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=166bp
MRDLKVDKLVLNCSVGESGDRLTRAAKVLEQLTGQSPVYSKARYTVRSFG
IRRNEKIACHVTVRGDKALEILERGLKVKEYELKRKNFSNTGSFGFGIQE
HIDLGLKYDPSTGIYGMDFYVVLNRPGYRVAKRKAKSAKIGYQHKVTKID
AVKWFQAKFEGIVTG*
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mRNA from alignment at P-littoralis_Contig204:86696..91323-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.36.1 ID=mRNA_P-littoralis_Contig204.36.1|Name=mRNA_P-littoralis_Contig204.36.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=4628bp|location=Sequence derived from alignment at P-littoralis_Contig204:86696..91323- (Pylaiella littoralis U1_48)
CAGGCGGAGACCAAGACCAACCCGATGAGGGACCTCAAGGTCGACAAGCT
GGTGCTGAACTGCTCCGTTGGGGAGTCTGGTGACAGACTGACGCGTGCGG
CGAAGGTGTTGGAGCAACTTACGGGACAATCTCCTGTCTACTCCAAGGGT
GAGTTTTGCTTTCGCCAAACAGCAGTTACGACTGGCAAATTTGGTGCTAC
CGGTATTCGTTCGCTACATAGGCAACAGTTTATCTAACGCGGTATACTGT
AATAATAGTTTGAAAAACCCATGCAGTCCAACCTGACTACCATGGCCTGC
GCCTGATGGGAGAATCGTTGACGCGCTCGCCCGTAGTTTCGTCGAAAAGA
GTTTACTACAGAGAGTCACGGCACTTGATGACTGAAGTCATAGTTTGGGT
CTCGCGGGAAAGGACTGGTTTGAAAAAATCGAACGTCTGTGCAAGAATTT
TGTCCACCTTGCACTGCTGCTGTAGATACAGCTGGGATGGACGTTATTCC
AGTGAAAGCCAAACCGACCTGCTGCTCAAGTCACAAACTTTTGCGACCGT
GCAGAAAAGTTTGTGGTCCGGTGTAAACTATTCCTTTTTTTTTGCCGTCT
CTATTGGCTGATGCCCATCATTCAGTTCACCATTTTTTTCCGGAAGTTAA
GTCTCACGCCTGACATTGAAACCCAGAGCGAACTTGGAGCCGTTCACCAT
GTTTATCTGAAAACGTCAGTTGGCCGAGCCACGTCTGGGTGCCTATCAGT
GTACCTCAAAGAGCGCTGGAGCTTAATGCTGTTGCTCGCATTGCCCATCA
ACCCACTTGCGGTTCAAATGACCACGTATCTAAAATGTAGCTCTGTACTT
TTCCCTGCAGTCCACCGATACCATATTTCGGTGCCGTCTTCAACGCATGC
CGCTACCAATCCGCCGTGAATCCCAATATCATTCACACCCCCCCCCACTG
TGCTTTCGTTTCGTGATGTTCCCAATAAAAAAATACCTCATTAAGCACGC
TACACGGTGCGGTCGTTCGGCATCCGCCGTAACGAGAAGATCGCGTGCCA
CGTGACGGTGAGAAATACGCCTTCGCCCATGGTACCCGTTTGTGTGTTCA
TCAATGCCTACAAGCACGCACGCGTACGGCGTGATCGTGTTTTCGTCAGG
TTGCCATCGCCCCGTGATACGACATGGATCCTTGTCGTGCCTCCTCTCCC
GTTTTTTATCTCCGTTCGTGAACATCGTTTGTGGTGACTTGATACACGAA
GGACGTCGCCTTATTAGCTTTCGTCGGCTCTGGTACCATTTCACACGCTG
CCATCTGCTCCCACTTGAGTCCAACTCCACGGTCGGTTCAATATGTGCCT
ATGCGGAGGACGCAGGTCCGCGGTGACAAGGCGTTGGAGATCCTTGAGCG
TGGGCTCAAGGTGAAGGAGTACGAGCTCAAGCGCAAGAACTTCTCCAACA
CGGGCAGCTTTGGATTTGGGATTCAGGAACACATCGACCTCGGTCTGAAA
TATGACCCGTCCACCGGTGAGAAGAACGCCCAGCACTTGCGTCGTCAGCT
CAAGTGTATTTGGATATTTGTTGATCAAACATCCAATGTTGTAGGATACA
CGCCTGTCTGTCGATGCTTTTTTCTTCGTGTGAGTCGCTGGTGAATTGCA
CGAAATGCTCAAAATCTTGAAATATGTTCTGTAACCCCTCCGGGTCCAGG
CTACTCTGTATCTTATCACACCGATCTCCCCGGTTCTAAACCATAACCAC
TCTAAGTTTATCCGAAAACCAAATTAAAATAATCAGCTGTGGGCCCACGA
AGAGAAAATTGACACAAGAGAACCTCACACACAGCCAGGGCCCCTGACGA
GGCCTCACAATAGGCCGGTAACATCCTTGGAGAGACTTGAAGGGTTAGCC
AGTGATAAAGATTCCTCTTTCTGCTCTCAAATATCGCCGAATGACAGCTG
TTCAGCGCAAGCCCCCCTTACCCGTACCTCACTAGACGCAACACAAACCA
GAAATAGCGTAAATTTTTAGCGCATTTTCCCCCACTGAAGCCCCCAACCT
TGATTTCGTTAATGTGGGAAGGGTCACCGTAGTAGTAGCAGTACCGGGCC
TACACATCCTTGTATCGTTATGATCCCAACGCCGTTTGCTGCTGCTTCAG
GCTGCGTGCGAATCACTGCTGCTGTTGTCAGGTAAATGGTACGTCTCCTA
GCAAATGGACTGCGCTGTTGTCTGGTTGCTGCGCGTTGTACAGATACAAA
GCGTGGCGTGTGAAGCGAAAGAAAATATATACTCAGGCGTATGAATACTA
CTTCGTACACCTACTGTACACAGCGCAGTGAGTTGTATCAAACATGCTGT
TCGAGCATTATAAGTACTGCTGTTGCTTCGTGTGTTTACGTAGATCATAC
TCGAAGTAGTATGTCTACGGGCATACGACGTTCATTAAGCAGCAGCAGTA
GCTGCGTACGTGAACAAACTTGACTACGCGAAACCCCTGGCGTGTTCGGG
TAAAAGTCCGAATGGACCAGACTTTGAAAAAGGAGGAAATGATCAAATTC
AGTAAAACCAAAAAATCCGACCCCAAGTCACAGAAAGGCTAATGTAACGC
CACCGTTAGGGCTCACACCCGACTTGCTCCTACCCGGGTAACCCACCCCG
GGTACCCAAAAACGAGTGCATCCCGGTCGGATTCAGTTTTTGCTCCCCGC
TCAGCTTGTTCAGGTCTCTAGGGGCGTGCCAAAAGGATTGAGGTGTGACT
TGACTTTGCTGTTGGAATTTGTGCAAATTTGGGTTCATACACGGGCATCA
AGACGCGCTTTGATCCCCTTTCGGCTCGTCGGGCCCTGTAACGGCCTGCC
AGGGTCGTACCGGTAGGTGGAACGGCATCTTTTGGGGGCACCGCTTGTCG
AACAATCGACAATCCCGAGTATTGGGGTGCGAGACTTTCAACCGTAACTG
GCAGCTCCAAATCGAAGCCCTGTGCAACGGTATCTTTAATGTCGACCACT
GTCTTTCATGTTCATTACATCAATAAGCCATCCCAATTTGGCAAGTTGTG
TCGCGTCAAATCGGAGCGTTCGTTTTCGTGTACAAACGACCGTTGTGTGC
TCAAAGCCATGGCTGAAACACTGGACTCTTGGAGTTCATACTAAAATCCG
ATTTGCAGGTGTGTTAGCTCATCAATGTTCGCGGTTGTCCTTGGGCAACA
AACCTCAAATACAATGCCGTACGAACGAGGAGACGCGCAAGTCCTGTTCA
GCACAAGACACTCGTGTGTCCAAAGGATTTGCATTTGTATGGAACTCGGC
ATACCCTCGGTGCACCGAATGGCCTTGCGTTTTGGTTCTACAAGTATTCA
TACTGAGTGGCCTGACCGACCTGCACCTCACTGCCCCTTGCTTTCAGGTA
TCTACGGAATGGATTTTTACGTCGTGCTGAACCGTCCCGGGTACCGCGTA
GCAAAGCGCAAGGCGAAGTCCGCCAAGATTGGTTACCAGCACAAAGTCAC
GAAAATTGACGCCGTCAAGTGGTTCCAGGTGCGTCGATAAACTTGGCTTT
TATCCGGAAACCGAAAACACTCGTGAAAAGTTTGGATCGCTTTTGTTTCG
TCACCGGAAGAATCAAATGACCCCGCATCCTCAATTCTGTCCTACTTGTA
CACACCTGTTGGGCAATAAATCACTCTCGATGTGTTGTGTTTTGACTCAA
GACACCGCCCCCTTCCTTGGCCTCTTAATTCATACTTTCTCAGGCGAAGT
TCGAGGGCATCGTTACGGGTTGAGTCAGGTTTTCCCGCGTCGGCATCTTC
GTAACGTAACACGGTAGATGTTGCTGGGCAGGCCGATCAGGGCAGGGTCT
GTTGAAATATTGGAATAAAAACGAAAAAAAAAGGGGGTGCTATTCTACGA
TGATACGTCAATATACGCGTTGCGGTGACATGCTCACAGTGACGCCGGCG
ACGTGAATGCGAAACCCTGGCGGCAAGGCGCAGGCGTCTGCACCTGTCAG
AGATTTGCTCAACCCTTCTGAGCCTTCACCCGGGTTTGGTTGAGCCTCCA
AATCGAGGATTTTTTCTGTTACGAGTCCGGTTTACTCGATGCCGAAGAGG
CACATTAGCACACACGAAAATGAGACACATCGAGGGTCGAGGTCAGGGGC
ACCAATACGCATAGAGCAACAGCATGGTATGTGTGTGCGATACAAGACAG
GCTGCAACAATGACAGGGACCGACGGCATAAGATGGGCTACATACACAGG
CAGCAAGAGTAGCGGTAGTGAGAGAGTATCCCAACGCAACGCAACGCAGC
TGCAGCTGATAGGCATGACGGTGAGAGAGTACACGAACATCCCAACGCAA
CGCAACGCAGCTGCAGCTGATAGGCATGACGGTGAGAGAGTACACGAACA
TCCCAACGCAACGCAACGCAGCTGTACACAAGATACGCATGACGGCGAGT
ACTTTCAACCCCGTCGGTGCACGCATGTGAGATGTGGGAACAGCAGCTGC
CGCCGGTGCGCGAGGGAGGTGGAAGGCCTGCACCTCTAGGGGTTTAGAGA
TGTGCACATGTAAAAAACCTTAAGTGGCAAAAATTATGCATTTGAGATGA
GACAGCAGCGGGAAATACAGCACCACGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig204:86696..91323-

>mRNA_P-littoralis_Contig204.36.1 ID=mRNA_P-littoralis_Contig204.36.1|Name=mRNA_P-littoralis_Contig204.36.1|organism=Pylaiella littoralis U1_48|type=CDS|length=498bp|location=Sequence derived from alignment at P-littoralis_Contig204:86696..91323- (Pylaiella littoralis U1_48)
ATGAGGGACCTCAAGGTCGACAAGCTGGTGCTGAACTGCTCCGTTGGGGA
GTCTGGTGACAGACTGACGCGTGCGGCGAAGGTGTTGGAGCAACTTACGG
GACAATCTCCTGTCTACTCCAAGGCACGCTACACGGTGCGGTCGTTCGGC
ATCCGCCGTAACGAGAAGATCGCGTGCCACGTGACGGTCCGCGGTGACAA
GGCGTTGGAGATCCTTGAGCGTGGGCTCAAGGTGAAGGAGTACGAGCTCA
AGCGCAAGAACTTCTCCAACACGGGCAGCTTTGGATTTGGGATTCAGGAA
CACATCGACCTCGGTCTGAAATATGACCCGTCCACCGGTATCTACGGAAT
GGATTTTTACGTCGTGCTGAACCGTCCCGGGTACCGCGTAGCAAAGCGCA
AGGCGAAGTCCGCCAAGATTGGTTACCAGCACAAAGTCACGAAAATTGAC
GCCGTCAAGTGGTTCCAGGCGAAGTTCGAGGGCATCGTTACGGGTTGA
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