mRNA_P-littoralis_Contig204.24.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.24.1
Unique NamemRNA_P-littoralis_Contig204.24.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.24.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:60358..61291 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size324
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size174
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.514019-UTR-P-littoralis_Contig204:60357..604161680789996.514019-UTR-P-littoralis_Contig204:60357..60416Pylaiella littoralis U1_48UTRP-littoralis_Contig204 60358..60416 +
1680789996.564635-UTR-P-littoralis_Contig204:61200..612911680789996.564635-UTR-P-littoralis_Contig204:61200..61291Pylaiella littoralis U1_48UTRP-littoralis_Contig204 61201..61291 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.545863-CDS-P-littoralis_Contig204:60416..605521680789996.545863-CDS-P-littoralis_Contig204:60416..60552Pylaiella littoralis U1_48CDSP-littoralis_Contig204 60417..60552 +
1680789996.554998-CDS-P-littoralis_Contig204:61162..612001680789996.554998-CDS-P-littoralis_Contig204:61162..61200Pylaiella littoralis U1_48CDSP-littoralis_Contig204 61163..61200 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.24.1prot_P-littoralis_Contig204.24.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 60417..61200 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.24.1

>prot_P-littoralis_Contig204.24.1 ID=prot_P-littoralis_Contig204.24.1|Name=mRNA_P-littoralis_Contig204.24.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=58bp
MVELEKRGPRLLLHPPSHQGRAAVVLPPWARTPDMVQRSRNKVIYGWRVS
TAMYYGW*
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mRNA from alignment at P-littoralis_Contig204:60358..61291+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.24.1 ID=mRNA_P-littoralis_Contig204.24.1|Name=mRNA_P-littoralis_Contig204.24.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=934bp|location=Sequence derived from alignment at P-littoralis_Contig204:60358..61291+ (Pylaiella littoralis U1_48)
AGGGTGAAGAAAACCAGTCTTGAAGAAGAAGGGAGAGGATAACTACACAA
CCCCAGAGGATGGTTGAGCTGGAGAAACGGGGCCCAAGGCTGCTGTTGCA
TCCACCATCACACCAGGGGAGGGCGGCAGTTGTCTTGCCTCCATGGGCGA
GGACACCCGACATGGTTCAGAGGTCACGCAACAAAGTTATTTACGGTACG
TTGTACCTCTTACATGCATTTTTTTTTTAGTTTTTACGCTCACATGTAGT
TATCAGTTGTCGGCACAGTACTTGCTTCGCCTGCTGTACGTGCGCGCAGC
ATCAGCAGCAGGAGCAGCAGTGGAATGTGCCTGCTGCATGTATGTATGGC
AGTATTTGTACAAGCATCTGCTGCTGTCGTCAAAGTTACTGTTGTTACAG
AAATCATGCCGTGCTACGCCGCCACCATCACACTTGCCCACATTATCACG
TCAAACTTCACTCACTCATAAATGTGTAGTTTTCTGGGGACGCGCCCGAG
GCTACCGAGAACAACCCCCCTGTAGAAAAAATGTTTGGGGCAATGGTGAC
GAATTAACTTTTGATATTCCTCGGAGATTCATGTCGAGTGTAGTCAGTGA
AAAAATAACCAGATTGGGTTGCTGCAGGGTGGGCCGAGGGGGGGGGGCGC
GGTGCTGTCTGCCACGAATCTATGTAGGACTACAATTGTTTTTGTGCTCT
CGCTGATACGCTATCCCTTTGCCGAACGTTTTTTTTTGTATCATACGAAG
TATGTGTTCTTCACGCTGTCCTACTGTGTCCGTGTGGTGTTGCTCGCCTT
TTCAGGTTGGCGTGTGTCCACGGCGATGTACTACGGATGGTGATTTTTTT
ATCCGGCAGAAGAGGGGTCCGGCGATAACGGCGCGGCGGTGAAGAGCTAC
ACGAGAGTATTTCGGACGAATCGAGGAAGGCAAG
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Coding sequence (CDS) from alignment at P-littoralis_Contig204:60358..61291+

>mRNA_P-littoralis_Contig204.24.1 ID=mRNA_P-littoralis_Contig204.24.1|Name=mRNA_P-littoralis_Contig204.24.1|organism=Pylaiella littoralis U1_48|type=CDS|length=174bp|location=Sequence derived from alignment at P-littoralis_Contig204:60358..61291+ (Pylaiella littoralis U1_48)
ATGGTTGAGCTGGAGAAACGGGGCCCAAGGCTGCTGTTGCATCCACCATC
ACACCAGGGGAGGGCGGCAGTTGTCTTGCCTCCATGGGCGAGGACACCCG
ACATGGTTCAGAGGTCACGCAACAAAGTTATTTACGGTTGGCGTGTGTCC
ACGGCGATGTACTACGGATGGTGA
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