mRNA_P-littoralis_Contig204.122.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.122.1
Unique NamemRNA_P-littoralis_Contig204.122.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig204.122.1 vs. uniprot
Match: A0A6H5KH61_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH61_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 3.670e-28
Identity = 56/103 (54.37%), Postives = 74/103 (71.84%), Query Frame = 2 
Query:  221 MAELPTPDVDGDVGGNSQACHAQFIEFVKANSSSRDGEGDLYRAFAFEIASQVGGRYYSRHVEEPPAPEDMSLAKKKKAAASHPGLCGVYHAAVIAGVKTEDI 529
            M +LPTPD++  VGGN QAC+ Q ++ + A  +  +   D+ RAFAFE+ S+VG RY S H+  P   EDMS AK+KKAAA HPGLCGVYHA +IA V+T+D+
Sbjct:    1 MEDLPTPDIEAYVGGNQQACYVQLVDVLSALPAGEENT-DVGRAFAFEVPSKVGARYCS-HLSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDV 101
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BLAST of mRNA_P-littoralis_Contig204.122.1 vs. uniprot
Match: A0A6H5JXX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXX9_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 3.250e-26
Identity = 51/101 (50.50%), Postives = 68/101 (67.33%), Query Frame = 2 
Query:  227 ELPTPDVDGDVGGNSQACHAQFIEFVKANSSSRDGEGDLYRAFAFEIASQVGGRYYSRHVEEPPAPEDMSLAKKKKAAASHPGLCGVYHAAVIAGVKTEDI 529
            ++PTPDV+G   GN+ ACH Q +  + AN+ + +G   L RAFAFE+A++VG  Y        P P  M+LA  KKAAA HPGLCGV+HA +IA V+TED+
Sbjct:    2 DMPTPDVEGYKAGNTMACHGQRVSLIAANTPAEEGTSTLLRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVHHAHIIAAVRTEDV 101
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BLAST of mRNA_P-littoralis_Contig204.122.1 vs. uniprot
Match: A0A6H5KUP8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUP8_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.340e-26
Identity = 51/100 (51.00%), Postives = 66/100 (66.00%), Query Frame = 2 
Query:  230 LPTPDVDGDVGGNSQACHAQFIEFVKANSSSRDGEGDLYRAFAFEIASQVGGRYYSRHVEEPPAPEDMSLAKKKKAAASHPGLCGVYHAAVIAGVKTEDI 529
            +PTPDV+G   GN+ ACH Q +  + AN+ + +    L RAFAFE+A++VG  Y        P P  M+LA  KKAAA HPGLCGVYHA +IA V+TED+
Sbjct:    1 MPTPDVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDV 99
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BLAST of mRNA_P-littoralis_Contig204.122.1 vs. uniprot
Match: A0A6H5K6B0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6B0_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 2.880e-24
Identity = 55/127 (43.31%), Postives = 74/127 (58.27%), Query Frame = 2 
Query:  167 RPLPSPTVTQTNQYEL------KQMAELPTPDVDGDVGGNSQACHAQFIEFVKANSSSRDGEGDLYRAFAFEIASQVGGRYYSRHVEEPPAPEDMSLAKKKKAAASHPGLCGVYHAAVIAGVKTEDI 529
            R L +   T+   +EL      K    +P P+V+G   GN+ ACH Q +  + AN+ + +    L RAFAFE+A++VG  Y        P P  M+LA  KKAAA HPGLCGVYHA +IA V+TED+
Sbjct:   43 RSLHAHKATKRTAHELSTQKPPKLWTYMPPPNVEGCKAGNTMACHEQMVSLIAANTPAEEDTSTLVRAFAFEVAAKVGAEYCHHDTAPEPMPS-MALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDV 168
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BLAST of mRNA_P-littoralis_Contig204.122.1 vs. uniprot
Match: A0A6H5KQB2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQB2_9PHAE)

HSP 1 Score: 89.4 bits (220), Expect = 5.220e-18
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 2 
Query:  227 ELPTPDVDGDVGGNSQACHAQFIEFVKANSSSRDG-EGDLYRAFAFEIASQVGGRYYSRHVEEPPAPEDMSLAKKKKAAASHPGLCGVYHAAVIAGVKTEDI 529
            ELP PDV+    GN++      +  +  N  S DG   +L RAFAFEIA+ VGG Y   H+ EP     M+ +  K AAA HPGLCGVYHA ++A VKT+D+
Sbjct:    2 ELPAPDVEAYKAGNTRPATI-MVSLIANNPPSEDGTNNNLARAFAFEIAAAVGGEYCD-HLTEPEPMPSMAPSAAKVAAAEHPGLCGVYHAHILAAVKTQDV 101
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BLAST of mRNA_P-littoralis_Contig204.122.1 vs. uniprot
Match: A0A6H5JH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH50_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 7.860e-17
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 2 
Query:  338 DLYRAFAFEIASQVGGRYYSRHVEEPPAPEDMSLAKKKKAAASHPGLCGVYHAAVIAGVKTEDI 529
            D+ RAFAFE+AS+VG RY S HV  P   EDMS AK+KKAAA HPGLCGVYHA +IA V+T+D+
Sbjct:  108 DVGRAFAFEVASKVGARYCS-HVSAPEPLEDMSHAKRKKAAADHPGLCGVYHAHIIAAVRTQDV 170
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BLAST of mRNA_P-littoralis_Contig204.122.1 vs. uniprot
Match: A0A6H5JAI4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAI4_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 2.650e-6
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 2 
Query:  431 MSLAKKKKAAASHPGLCGVYHAAVIAGVKTEDI 529
            M+LA  KKAAA HPGLCGVYHA +IA V+TED+
Sbjct:    4 MALAAAKKAAAEHPGLCGVYHAHIIAAVRTEDV 36
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KH61_9PHAE3.670e-2854.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JXX9_9PHAE3.250e-2650.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KUP8_9PHAE3.340e-2651.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6B0_9PHAE2.880e-2443.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KQB2_9PHAE5.220e-1847.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JH50_9PHAE7.860e-1767.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAI4_9PHAE2.650e-672.73Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:417246..418128 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size883
Hectar predicted targeting categoryother localisation
Exons1
Cds size312
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.6355228-UTR-P-littoralis_Contig204:417245..4174651680789999.6355228-UTR-P-littoralis_Contig204:417245..417465Pylaiella littoralis U1_48UTRP-littoralis_Contig204 417246..417465 +
1680789999.655654-UTR-P-littoralis_Contig204:417777..4181281680789999.655654-UTR-P-littoralis_Contig204:417777..418128Pylaiella littoralis U1_48UTRP-littoralis_Contig204 417778..418128 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.6460893-CDS-P-littoralis_Contig204:417465..4177771680789999.6460893-CDS-P-littoralis_Contig204:417465..417777Pylaiella littoralis U1_48CDSP-littoralis_Contig204 417466..417777 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.122.1prot_P-littoralis_Contig204.122.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 417466..417777 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.122.1

>prot_P-littoralis_Contig204.122.1 ID=prot_P-littoralis_Contig204.122.1|Name=mRNA_P-littoralis_Contig204.122.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=104bp
MAELPTPDVDGDVGGNSQACHAQFIEFVKANSSSRDGEGDLYRAFAFEIA
SQVGGRYYSRHVEEPPAPEDMSLAKKKKAAASHPGLCGVYHAAVIAGVKT
EDI*
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mRNA from alignment at P-littoralis_Contig204:417246..418128+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.122.1 ID=mRNA_P-littoralis_Contig204.122.1|Name=mRNA_P-littoralis_Contig204.122.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=883bp|location=Sequence derived from alignment at P-littoralis_Contig204:417246..418128+ (Pylaiella littoralis U1_48)
TAGCGTTCTAGACTTGAGCGTACAAATTCAAGACAAAAGCTAAAAAATCA
TTACGAGCTTTTGATTACGCCCCAAGCACTGCAGCTCGGCTACCACGATA
TGCACTTCTGTTTTTATTTTATTTTCATGTGGGCTGGTACGTTGGTGCTG
CTGCTGCTGCGGCCTGCGGCCGCTCCCCAGTCCAACCGTAACCCAAACAA
ACCAATACGAGCTCAAACAAATGGCCGAGCTACCCACGCCCGATGTCGAT
GGCGACGTGGGCGGCAACTCTCAGGCTTGCCACGCCCAATTCATAGAGTT
CGTGAAAGCGAACTCCTCGTCGAGGGACGGTGAGGGCGACCTCTATCGAG
CGTTTGCGTTCGAGATTGCCAGCCAAGTTGGCGGGCGCTACTACTCCCGC
CATGTCGAGGAACCGCCCGCCCCTGAAGACATGAGCCTCGCCAAGAAGAA
GAAGGCAGCTGCGAGCCACCCGGGCCTATGCGGCGTTTACCATGCCGCTG
TCATTGCTGGGGTGAAGACGGAAGATATCTGATGTGTTGGACAAATGGGG
AACAACCACGGCTAACAAGTACTGTACAGAAGCCATGTGAGCCCAATTGT
ACTGGAACCTACTTCGAAGTATATAATTCGAGCGAAGCGAGATTTCTATT
CTTGCTTGAAGTCTCGCCGCAAATATGGGGGCTGATGTAGAAAAAAAAGT
TTGTGCGTGTGTTCGCTTAAACTAGGTTTTAGAGTACAACCCTACATGAC
TTGGTATTAAAGGGGGGTCAGCAGACAGAACACAGAACACACGCAGCAGC
GGGCAAAAGAAGAAAGGGTCTCTTCCACCTCCCGCGGACGCACACGTCTG
ACGACAGTTACATCTATCAGCTGTCGCTCGTTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig204:417246..418128+

>mRNA_P-littoralis_Contig204.122.1 ID=mRNA_P-littoralis_Contig204.122.1|Name=mRNA_P-littoralis_Contig204.122.1|organism=Pylaiella littoralis U1_48|type=CDS|length=312bp|location=Sequence derived from alignment at P-littoralis_Contig204:417246..418128+ (Pylaiella littoralis U1_48)
ATGGCCGAGCTACCCACGCCCGATGTCGATGGCGACGTGGGCGGCAACTC
TCAGGCTTGCCACGCCCAATTCATAGAGTTCGTGAAAGCGAACTCCTCGT
CGAGGGACGGTGAGGGCGACCTCTATCGAGCGTTTGCGTTCGAGATTGCC
AGCCAAGTTGGCGGGCGCTACTACTCCCGCCATGTCGAGGAACCGCCCGC
CCCTGAAGACATGAGCCTCGCCAAGAAGAAGAAGGCAGCTGCGAGCCACC
CGGGCCTATGCGGCGTTTACCATGCCGCTGTCATTGCTGGGGTGAAGACG
GAAGATATCTGA
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