mRNA_P-littoralis_Contig204.113.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.113.2
Unique NamemRNA_P-littoralis_Contig204.113.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 7.690e-64
Identity = 124/290 (42.76%), Postives = 167/290 (57.59%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 705
            F+ + N+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L   A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF                           R    +PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E +   L   A T+V ++ GGLTP+ QPLDR +NK+ KR +R +YT++
Sbjct:   27 FKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 315          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 7.000e-63
Identity = 125/290 (43.10%), Postives = 167/290 (57.59%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 705
            F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G EG AWA + KLR +L + A E                               +F  L NMDQTP+Q E+P +TT+EKTG K A I+TGG+ EK R+T+VLAV  DG+KV PRII+KG PF                           R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH++E F   L   A T+V  + G LTP+ QPLDR +NK+ KR +R +YT++
Sbjct:   27 FKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAY 315          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 4.390e-61
Identity = 122/290 (42.07%), Postives = 165/290 (56.90%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 705
            F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KL  +L + A E                               +F  + NMDQ P+Q EMP +TT++KTG K A I+TGG  EK R+T+VLAV  DG+KV PRII++G PF                           R   G+PA G+S GVQ+ SW D  + + W++  +  RP + S   QRP +LVLDDF+CH +E F   L   A T+V  + GGLTP+ QPLDR +NK+ KR +R +YT++
Sbjct:  221 FKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 510          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 200 bits (509), Expect = 4.770e-57
Identity = 123/298 (41.28%), Postives = 164/298 (55.03%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDF--------MRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTSW 705
            F+ +FN+WY RF KR+ FSIRR+ SVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I+TGG+ EK R+T+VLAV  DG+ V P II+KG PF                           R   G+PA G+S GVQ+ SW    + + W+   +        M RP + S   QRP +LVLDDF+CH++E F   L   A T+V  + GGLTP+ QPLDR +NK+ KR +R +YT++
Sbjct:  181 FKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAY 477          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 5.170e-56
Identity = 123/287 (42.86%), Postives = 158/287 (55.05%), Query Frame = 1
Query:   19 RFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 702
            +F +WY RF KR++FSIRR+TSVGQK P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+E TG K A I TGG+ EK R+T+ LAV  DG+KV  RII+KG PF                           R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V  + GGL P+ QPLDR +NK+ KR +R  YT+
Sbjct:  184 KFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTA 468          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 202 bits (513), Expect = 6.790e-56
Identity = 125/285 (43.86%), Postives = 157/285 (55.09%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVR 687
            F+ +F  WY+ F +RH FSIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T  LAV  DG KV  RII+KG PF                           RT FGYP  G+   VQ+ SWCD  +   W+++ +  RP  GS  + QR S+LVLDDFRCHR E F K L     T V ++ GGLTP+ QPLDR +NKE KR +R
Sbjct:   96 FRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIK-QRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMR 378          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5KE45_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE45_9PHAE)

HSP 1 Score: 190 bits (482), Expect = 2.110e-53
Identity = 123/315 (39.05%), Postives = 158/315 (50.16%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGET-------------------------EKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 702
            F+ +F +WY RF KR++FSIRR+TSVG + P+G EG AWA + KLR +L E A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I TG                            EK R+T+ LAV  DG KV  RII+KG PF                           R+  G P GG+S GVQ+ SWCD  +   W+   +  RP  GS  R QR  +LVLDDF+CH+++ F   L   A T+V  + GGLTP+ QPLDR +NK+ KR +R  YT+
Sbjct:  114 FKSKFKSWYQRFRKRNKFSIRRRTSVGIRLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFKDLGNMDQTPVQYEMPVETTLEKTGAKDARIATGAGVCCIRTILKPLPYPPTSCILPPPPGKEKERFTLCLAVSADGTKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLREYKLWIKDSWKLRPNNGSVVR-QRRCILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTA 427          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 186 bits (473), Expect = 1.550e-51
Identity = 122/302 (40.40%), Postives = 162/302 (53.64%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------RTSFGYPA-----------GGISLGVQ--------------KSSWCDGTQSDEWVTQDFMRRPGSTSR-DQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTS 702
            F+ +FN+WY RF KR+ FSIRR+TSVGQK P+G+EG AWA + KLR +L + A E                               +F  L NMDQTP+Q EMP +TT+EKTG K A I+TGGE EK R+T+VLAV  DG+KV PRII+KG PF               + S  +             GG    V               + SW D  + + W+   +  RP + S   QRP +LVLDDF+CH++E F   L   AKT++  + GGLT + QPLDR +NK+ KR +R +YT+
Sbjct:  209 FKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKTVI-FIPGGLTSLLQPLDRMLNKQMKRLLRGKYTA 508          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5JQM5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM5_9PHAE)

HSP 1 Score: 185 bits (470), Expect = 1.690e-51
Identity = 120/292 (41.10%), Postives = 159/292 (54.45%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF---------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRP--GSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 708
            F+ +F  WY+RF +RH  SIRR+TSVGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T+ LAV  DG KV  RII+KG PF                           +T+FGYP  G+S GVQ+ SW D  +   W+++ +  RP  GS  + QR S+LVLDDFR +              T V ++ GGLTP+ QPLDR ++KE KR +R RYT ++
Sbjct:  200 FRTKFKNWYHRFRERHGLSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLSPAQLESVATEVFEELGNMDQTPVQQEMPVETTLEKGGAKDARISTGGK-EKERFTLCLAVMADGGKVPLRIIFKGKPFIPPSTARRGKNTQPRKGSIAAEVLPANQTNFGYPVSGMSFGVQERSWYDACECTLWLSESWGFRPNHGSVIK-QRHSILVLDDFRTN--------------TTVILIPGGLTPLLQPLDRMLDKEMKRLMRRRYTQYM 475          
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Match: A0A6H5JB72_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB72_9PHAE)

HSP 1 Score: 172 bits (435), Expect = 5.870e-47
Identity = 118/352 (33.52%), Postives = 157/352 (44.60%), Query Frame = 1
Query:   10 FQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRSSLREHAQEA------------------------------IFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEKLRYTVVLAVRGDGQKVRPRIIYKGNPF-----------------------------------------------------------------------------------------RTSFGYPAGGISLGVQKSSWCDGTQSDEWVTQDFMRRPGSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKTLVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWI 708
            F+ +F  W++RF +R   SIRR T+VGQK P G+EG A+A + KLR++L E A E                               +F  L NMDQTP+Q EMP +TT+EK G K A I+TGG+ EK R+T+ LAV  DG KV  +II+KG PF                                                                                         RT FGYP  G+S GVQ+ +WCD  +   W+++ +             S+LVLDDFRCHR E F + L     T+V ++ GGLTP+ QPLDR +NKE KR +R RYT ++
Sbjct:  122 FKTKFKNWHHRFRERRGVSIRRHTNVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRHPPAPDESPIKGKDLSPAQLESVAAEVFEELGNMDQTPVQQEMPVETTLEKRGAKDARISTGGK-EKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPKDRFTLCLAVMADGGKVPLQIIFKGKPFIPPSTAGRGRNTQPRKGSIAAESLPANRTKFGYPVSGMSFGVQEKNWCDARECILWLSESW-------------SILVLDDFRCHRSESFIEDLRRRTNTIVILIPGGLTPLFQPLDRMLNKEMKRLMRGRYTQYM 459          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.113.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JUK2_9PHAE7.690e-6442.76DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE7.000e-6343.10DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JHT8_9PHAE4.390e-6142.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE4.770e-5741.28DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE5.170e-5642.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K583_9PHAE6.790e-5643.86Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KE45_9PHAE2.110e-5339.05DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE1.550e-5140.40DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5JQM5_9PHAE1.690e-5141.10DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JB72_9PHAE5.870e-4733.52DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:395370..396785 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FXD3
Preferred namePOGK
PFAMsBrkDBD,DDE_1,HTH_Tnp_Tc5,KRAB
Model size714
Max annot lvl2759|Eukaryota
KEGG koko:K09228
Hectar predicted targeting categorymitochondrion
Exons4
Evalue2.46e-47
EggNOG OGsKOG3105@1|root,KOG3105@2759|Eukaryota
DescriptionDNA binding
Cds size714
COG categoryCH
BRITEko00000,ko03000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.4319375-CDS-P-littoralis_Contig204:395369..3957021680789999.4319375-CDS-P-littoralis_Contig204:395369..395702Pylaiella littoralis U1_48CDSP-littoralis_Contig204 395370..395702 -
1680789999.4442186-CDS-P-littoralis_Contig204:395780..3958671680789999.4442186-CDS-P-littoralis_Contig204:395780..395867Pylaiella littoralis U1_48CDSP-littoralis_Contig204 395781..395867 -
1680789999.4543185-CDS-P-littoralis_Contig204:396386..3965031680789999.4543185-CDS-P-littoralis_Contig204:396386..396503Pylaiella littoralis U1_48CDSP-littoralis_Contig204 396387..396503 -
1680789999.4717312-CDS-P-littoralis_Contig204:396608..3967851680789999.4717312-CDS-P-littoralis_Contig204:396608..396785Pylaiella littoralis U1_48CDSP-littoralis_Contig204 396609..396785 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.113.2prot_P-littoralis_Contig204.113.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 395370..396785 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.113.2

>prot_P-littoralis_Contig204.113.2 ID=prot_P-littoralis_Contig204.113.2|Name=mRNA_P-littoralis_Contig204.113.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=238bp
MEKFQKRFNAWYYRFLKRHRFSIRRKTSVGQKKPEGWEGKAWAFIQKLRS
SLREHAQEAIFALLYNMDQTPIQAEMPPDTTVEKTGTKSACITTGGETEK
LRYTVVLAVRGDGQKVRPRIIYKGNPFRTSFGYPAGGISLGVQKSSWCDG
TQSDEWVTQDFMRRPGSTSRDQRPSVLVLDDFRCHREERFQKKLMDLAKT
LVAMLGGGLTPVCQPLDRNINKEFKRGVRARYTSWIRD
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mRNA from alignment at P-littoralis_Contig204:395370..396785-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.113.2 ID=mRNA_P-littoralis_Contig204.113.2|Name=mRNA_P-littoralis_Contig204.113.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=1416bp|location=Sequence derived from alignment at P-littoralis_Contig204:395370..396785- (Pylaiella littoralis U1_48)
ATGGAAAAATTTCAGAAGCGTTTCAACGCCTGGTACTACAGGTTCCTCAA GAGGCACCGGTTCTCGATCCGACGCAAGACGAGCGTGGGGCAGAAGAAGC CGGAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAGAAGCTTCGCTCA AGCCTGCGTGAGCACGCGCAGGAAGCCGTTCTCTTGGAGAGGGCAGCCCA GGCAGCGAAGGACGGAGGGACCGTTGAGATCGAGATGGACGTCATCGCAA CTGCGGAGGAACTTCTGGCTGTTCAGGGCAAGATCTTCGCCCTTCTGTAC AACATGGACCAGACCCCGATCCAGGCTGAGATGCCGCCGGACACCACGGT GGAGAAGACTGGTACGAAGAGCGCTTGCATCACGACAGGAGGTGAGACGG TGTACTAAAGGTATTTCGATTGTTGAAATTCAGTTCAAACCAACATGGTG GAGATTTTCTGACGATGGAACAAGCGGGGAATTACAAATTTGCCGACGGC GGAAAAACGGGGAATTATAATATTTTGCATTGCTTCTGCCGTCACGTGCA CGCTTTCGTTCTTCTATTGCCTGCAAGTACGGTACGTACTGCTGTATCGC CTGTCCCTTCGAACTACCGGTACACAGCGATGAAATTATTCATATGGTAT TCCGCTGAAGTATTTTTTTTAATATACATATGTTTTGGGGGCAATATATA TTTTACCGTATACACCGGAGTTTGTTTTTATTTTACTTTTTATGTTGTGG TAGGCATTACACCCCAGGAGTTAAAGGTGTGTGTTTGTTTTTTATTATTA TTTATTTTTTGTTTGTTGTGGCAGGCAATACGATTAATAATTATACTGCT TTGCGGAGTATTTTCTTTTAACACAATTTCCTTTGTTTGCATACGCCCCA ATTTTCGCACCAGGCAAGGAGAAGCTGCGGTACACCGTGGTGCTAGCTGT CCGGGGTGATGGACAGAAGGTGCGGCCGCGCATCATCTACAAGGGGAACC CTTTTGTCGGGGGTACCAACAAGTCAGGCTCAGCCAAGAAGCCTGGCAAG AACAGCCTGTCGTACGAGCACCTCCCAGACAAGCGGACGAGCTTCGGCTA CCCGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACG GCACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGG TCTACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAG GTGCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGA CGCTGGTGGCGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTC GACCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACAC CAGCTGGATCCGGGAC
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Coding sequence (CDS) from alignment at P-littoralis_Contig204:395370..396785-

>mRNA_P-littoralis_Contig204.113.2 ID=mRNA_P-littoralis_Contig204.113.2|Name=mRNA_P-littoralis_Contig204.113.2|organism=Pylaiella littoralis U1_48|type=CDS|length=714bp|location=Sequence derived from alignment at P-littoralis_Contig204:395370..396785- (Pylaiella littoralis U1_48)
ATGGAAAAATTTCAGAAGCGTTTCAACGCCTGGTACTACAGGTTCCTCAA
GAGGCACCGGTTCTCGATCCGACGCAAGACGAGCGTGGGGCAGAAGAAGC
CGGAAGGATGGGAGGGCAAGGCGTGGGCATTCATCCAGAAGCTTCGCTCA
AGCCTGCGTGAGCACGCGCAGGAAGCCATCTTCGCCCTTCTGTACAACAT
GGACCAGACCCCGATCCAGGCTGAGATGCCGCCGGACACCACGGTGGAGA
AGACTGGTACGAAGAGCGCTTGCATCACGACAGGAGGTGAGACGGAGAAG
CTGCGGTACACCGTGGTGCTAGCTGTCCGGGGTGATGGACAGAAGGTGCG
GCCGCGCATCATCTACAAGGGGAACCCTTTTCGGACGAGCTTCGGCTACC
CGGCTGGCGGCATCAGCCTCGGGGTGCAGAAGTCGTCGTGGTGCGACGGC
ACCCAGTCCGACGAGTGGGTAACCCAGGACTTCATGCGCCGCCCAGGGTC
TACCTCCAGAGATCAGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGT
GCCACCGGGAAGAGAGGTTCCAAAAGAAGCTAATGGACCTGGCCAAGACG
CTGGTGGCGATGCTTGGTGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGA
CCGGAACATCAACAAGGAGTTCAAGCGAGGTGTTCGGGCCAGGTACACCA
GCTGGATCCGGGAC
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