mRNA_P-littoralis_Contig204.109.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.109.1
Unique NamemRNA_P-littoralis_Contig204.109.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5JMQ7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ7_9PHAE)

HSP 1 Score: 270 bits (691), Expect = 1.410e-83
Identity = 138/140 (98.57%), Postives = 139/140 (99.29%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYIN 421
            QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPR TIK+VCKYIN
Sbjct:  189 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKEVCKYIN 328          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5L611_9PHAE (Uncharacterized protein n=8 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L611_9PHAE)

HSP 1 Score: 272 bits (695), Expect = 2.920e-82
Identity = 139/140 (99.29%), Postives = 139/140 (99.29%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYIN 421
            QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPR TIKDVCKYIN
Sbjct:  236 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRFTIKDVCKYIN 375          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5L6Y6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6Y6_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 5.280e-63
Identity = 113/140 (80.71%), Postives = 117/140 (83.57%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYIN 421
            QAYSSLEVLKEER+ DVKQLE TRKAN VLSGCK              FDLLNEASLVRHEA LLR+AAKVAG SPQAYAPSTILRWLRDFRKEGGFRRDARGAHE DWIMSEEDLK  LLAWMI QPR+T+KDVCKYIN
Sbjct:  161 QAYSSLEVLKEERDSDVKQLECTRKANGVLSGCK--------------FDLLNEASLVRHEAPLLRIAAKVAGPSPQAYAPSTILRWLRDFRKEGGFRRDARGAHETDWIMSEEDLKGKLLAWMIPQPRVTVKDVCKYIN 286          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: D8LIV1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIV1_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 2.710e-53
Identity = 95/140 (67.86%), Postives = 112/140 (80.00%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYIN 421
            Q Y +L+VL  E  RD KQL LT +ANEVL+G K  TDAAV+E +A+RF+LLNEASLVR++ASLLR+AA V  +    YA STILRWLRDFRK+GGFRRD+RG HEPDWIMSEEDLK  LL WM +Q RLT+KDV K+IN
Sbjct:  235 QGYCTLKVLVAELARDTKQLVLTVEANEVLAGSKGVTDAAVREGEAKRFELLNEASLVRYDASLLRIAANVVQTGSHPYAVSTILRWLRDFRKQGGFRRDSRGVHEPDWIMSEEDLKGQLLTWMRTQQRLTVKDVWKFIN 374          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5JRV8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRV8_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 4.700e-43
Identity = 86/148 (58.11%), Postives = 111/148 (75.00%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYINREIALREV 445
            Q +S+L VLKEER+RD++QL+LT++A   LS   + T  AVK A+A+RF+LLNEAS +RHE+SLLR+AA+V  +  + YA STIL WLRDFR  GGF+ D+RG HE DWIMSEEDLK  L+ WM  Q RLT+KDV  YIN+ +   E+
Sbjct:   51 QGHSALTVLKEERKRDLRQLQLTQQAKS-LSDESYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGFKLDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEI 197          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5JMT5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMT5_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 8.300e-43
Identity = 86/148 (58.11%), Postives = 112/148 (75.68%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYINREIALREV 445
            Q +S+L VLKEER+RD++QL+LT++A   LS   + T  AVK A+A+RF+LLNEAS +RHE+SLLR+AA+V  +  + YA STIL WLRDFR  GG +RD+RG HE DWIMSEEDLK  L+ WM +Q RLT+KDV  YIN+ +   E+
Sbjct:  191 QGHSALTVLKEERKRDLRQLQLTQQAKS-LSDESYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGSKRDSRGVHERDWIMSEEDLKDELVMWMRTQKRLTVKDVQNYINQWLFANEI 337          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5JI16_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI16_9PHAE)

HSP 1 Score: 160 bits (404), Expect = 1.850e-42
Identity = 85/148 (57.43%), Postives = 111/148 (75.00%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYINREIALREV 445
            Q +S+L VLKEER+RD++QLELT++A   LS   + T  AVK A+A+RF+LLNEAS  RHE+SLLR+AA+V  +  + YA ST+L WLRDFR  GGF+RD+R  HE DWIMS+EDLK  L+ WM +Q RLT+KDV  YIN+ +   E+
Sbjct:  149 QGHSALTVLKEERKRDLRQLELTQQAKS-LSDESYTTIPAVKAAEAKRFELLNEASRRRHESSLLRIAARVNSAGSRVYAASTVLGWLRDFRGHGGFKRDSRRVHERDWIMSKEDLKDELIKWMRTQKRLTVKDVQNYINQWLFANEI 295          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5J8D7_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D7_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 2.460e-42
Identity = 104/195 (53.33%), Postives = 112/195 (57.44%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYINREIALREVVIRSKEFIEKMRKIQKAHRNILDMETSFLGDQ*QRRPADGEGGGSRV 586
            QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKE DA+RFDLLNEASLVRHEASLLR+AAKVA                  +   G  RR AR                              +D C+   REIAL  VVIRSKEFIEK RK QKAH      +  FL            GGG+R+
Sbjct:   36 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKETDAKRFDLLNEASLVRHEASLLRIAAKVADK----------------YLTIGRVRRFARRT----------------------------RDYCR-AYREIALSGVVIRSKEFIEKTRKFQKAHATCWTWKLVFLATSNNVGRPMARGGGARL 185          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5JUI4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUI4_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 1.860e-41
Identity = 85/148 (57.43%), Postives = 110/148 (74.32%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDVCKYINREIALREV 445
            Q +S+L VLKEER+RD++QL+LT++A   LS   + T  AVK A+A+RF++L EAS  RHE+SLLR+AA+V  +  + YA STIL WLRDFR  GGF+RD+RG HE DWIMSEEDLK  L+ WM  Q RLT+KDV  YIN+ +   E+
Sbjct:  264 QGHSALTVLKEERKRDLRQLQLTQQAKS-LSDESYTTIPAVKAAEAKRFEVLIEASRRRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRRQKRLTVKDVQNYINQWLFANEI 410          
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Match: A0A6H5K2T4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2T4_9PHAE)

HSP 1 Score: 156 bits (395), Expect = 9.320e-41
Identity = 83/135 (61.48%), Postives = 105/135 (77.78%), Query Frame = 2
Query:    2 QAYSSLEVLKEERERDVKQLELTRKANEVLSGCKHATDAAVKEADAERFDLLNEASLVRHEASLLRMAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDLKSALLAWMISQPRLTIKDV 406
            Q +S+L VLKEER+RD++QL+LT++A   LS   + T  AVK A+A+RF+LLNEAS +RHE+SLLR+AA+V  +  + YA STIL WLRDFR  GGF+RD+RG HE DWIMSEEDLK  L+ WM +Q RLT KDV
Sbjct:  320 QGHSALTVLKEERKRDLRQLQLTQQAKS-LSDESYTTIPAVKAAEAKRFELLNEASRLRHESSLLRIAARVNSAGSRVYAASTILGWLRDFRGHGGFKRDSRGVHERDWIMSEEDLKDELIKWMRTQKRLTAKDV 453          
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JMQ7_9PHAE1.410e-8398.57Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L611_9PHAE2.920e-8299.29Uncharacterized protein n=8 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6Y6_9PHAE5.280e-6380.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LIV1_ECTSI2.710e-5367.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JRV8_9PHAE4.700e-4358.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMT5_9PHAE8.300e-4358.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JI16_9PHAE1.850e-4257.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8D7_9PHAE2.460e-4253.33Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JUI4_9PHAE1.860e-4157.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K2T4_9PHAE9.320e-4161.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:379102..379695 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size594
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.2692552-UTR-P-littoralis_Contig204:379101..3793001680789999.2692552-UTR-P-littoralis_Contig204:379101..379300Pylaiella littoralis U1_48UTRP-littoralis_Contig204 379102..379300 +
1680789999.288672-UTR-P-littoralis_Contig204:379645..3796951680789999.288672-UTR-P-littoralis_Contig204:379645..379695Pylaiella littoralis U1_48UTRP-littoralis_Contig204 379646..379695 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.2793517-CDS-P-littoralis_Contig204:379300..3796451680789999.2793517-CDS-P-littoralis_Contig204:379300..379645Pylaiella littoralis U1_48CDSP-littoralis_Contig204 379301..379645 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.109.1prot_P-littoralis_Contig204.109.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 379301..379645 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.109.1

>prot_P-littoralis_Contig204.109.1 ID=prot_P-littoralis_Contig204.109.1|Name=mRNA_P-littoralis_Contig204.109.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=115bp
MAAKVAGSSPQAYAPSTILRWLRDFRKEGGFRRDARGAHEPDWIMSEEDL
KSALLAWMISQPRLTIKDVCKYINREIALREVVIRSKEFIEKMRKIQKAH
RNILDMETSFLGDQ*
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mRNA from alignment at P-littoralis_Contig204:379102..379695+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.109.1 ID=mRNA_P-littoralis_Contig204.109.1|Name=mRNA_P-littoralis_Contig204.109.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=594bp|location=Sequence derived from alignment at P-littoralis_Contig204:379102..379695+ (Pylaiella littoralis U1_48)
GCAAGCGTACTCATCGTTGGAGGTGCTGAAAGAGGAGCGGGAGCGCGACG TCAAGCAGCTGGAGCTCACGCGGAAGGCGAACGAGGTTTTGTCCGGCTGC AAGCATGCAACGGATGCCGCCGTGAAGGAAGCCGATGCCGAACGGTTTGA CCTGCTCAACGAGGCGTCGTTGGTTCGGCACGAGGCTTCGCTCCTGCGGA TGGCGGCAAAGGTAGCAGGTTCTAGTCCGCAGGCTTATGCGCCATCAACG ATCCTGAGGTGGCTCAGAGACTTTCGGAAGGAAGGTGGTTTCAGGCGGGA TGCACGGGGTGCGCACGAGCCGGACTGGATCATGTCAGAGGAGGATCTGA AGAGTGCGTTGCTGGCGTGGATGATATCACAACCGCGTCTCACCATCAAG GACGTCTGCAAGTACATCAACCGCGAGATTGCGCTTCGCGAGGTAGTCAT CAGGAGCAAGGAGTTCATCGAGAAGATGCGCAAGATCCAAAAGGCCCACC GCAACATTTTGGACATGGAAACTAGTTTTCTTGGCGACCAGTAACAACGT CGGCCGGCCGATGGCGAGGGGGGGGGGTCTCGAGTTGTGTGTGC
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Coding sequence (CDS) from alignment at P-littoralis_Contig204:379102..379695+

>mRNA_P-littoralis_Contig204.109.1 ID=mRNA_P-littoralis_Contig204.109.1|Name=mRNA_P-littoralis_Contig204.109.1|organism=Pylaiella littoralis U1_48|type=CDS|length=345bp|location=Sequence derived from alignment at P-littoralis_Contig204:379102..379695+ (Pylaiella littoralis U1_48)
ATGGCGGCAAAGGTAGCAGGTTCTAGTCCGCAGGCTTATGCGCCATCAAC
GATCCTGAGGTGGCTCAGAGACTTTCGGAAGGAAGGTGGTTTCAGGCGGG
ATGCACGGGGTGCGCACGAGCCGGACTGGATCATGTCAGAGGAGGATCTG
AAGAGTGCGTTGCTGGCGTGGATGATATCACAACCGCGTCTCACCATCAA
GGACGTCTGCAAGTACATCAACCGCGAGATTGCGCTTCGCGAGGTAGTCA
TCAGGAGCAAGGAGTTCATCGAGAAGATGCGCAAGATCCAAAAGGCCCAC
CGCAACATTTTGGACATGGAAACTAGTTTTCTTGGCGACCAGTAA
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