mRNA_P-littoralis_Contig204.106.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.106.1
Unique NamemRNA_P-littoralis_Contig204.106.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5JG32_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG32_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 7.730e-40
Identity = 62/83 (74.70%), Postives = 71/83 (85.54%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGT 249
            VTH+GWGMCPFTLGRS+TGKEGFPT+A++VTVDHAGRAI +T  FTGATNDKTI+RYDA V  I+ +  Y  R YKLRRADGT
Sbjct:   18 VTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHVIKADFQYTKRTYKLRRADGT 100
[Close]
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5KH50_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH50_9PHAE)

HSP 1 Score: 139 bits (351), Expect = 3.650e-39
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGT 249
            VTH+GWGMCPFTLGRS+TGKEGFPT+A++VTVDHAGRAI +T  FTGATNDKTI+RYDA V TI+ +  Y  R YKLRRADGT
Sbjct:   80 VTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIMRYDAGVHTIKTDAQYTKRTYKLRRADGT 162
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BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5KEF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF0_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 6.230e-39
Identity = 63/86 (73.26%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFT 258
            VTH+ W MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT  FTGATNDKTI+RYD+ V  IR    Y +REYKLR+A+GTE T
Sbjct:  141 VTHIDWNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERT 226
[Close]
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5JCU6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCU6_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 5.950e-38
Identity = 63/83 (75.90%), Postives = 72/83 (86.75%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGT 249
            VTH+GWGMCPFTLGRS+TGKEGFPT+A++VTVDHAGRAI +T  FTGATNDKTI+RYDA V TI+ +  Y  R YKLRRADGT
Sbjct:  327 VTHIGWGMCPFTLGRSYTGKEGFPTIAYQVTVDHAGRAIAITSGFTGATNDKTIIRYDAGVHTIKTDAQYTKRTYKLRRADGT 409
[Close]
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 139 bits (350), Expect = 1.060e-36
Identity = 64/86 (74.42%), Postives = 72/86 (83.72%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFT 258
            VTH+GW MCPFTLGRSFTGKEGFPT+A EVTVDHAGRA+ VT  FTGATNDKTI+RYD+ V  IR    Y +REYKLR+A+GTE T
Sbjct:  290 VTHIGWNMCPFTLGRSFTGKEGFPTIACEVTVDHAGRALAVTNGFTGATNDKTIIRYDSGVNKIRTESQYTEREYKLRKANGTERT 375
[Close]
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 132 bits (331), Expect = 2.490e-35
Identity = 59/84 (70.24%), Postives = 70/84 (83.33%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTE 252
            VTH+GW MCPFTLGRSFTGKEGFPT+A++VTVDH GR + VT  FTGATNDKTI+RYD+ V  IR    Y +REYKLR+A+GT+
Sbjct:  113 VTHIGWNMCPFTLGRSFTGKEGFPTIAYDVTVDHDGRDLAVTNGFTGATNDKTIIRYDSGVNKIRTASQYTEREYKLRKANGTK 196
[Close]
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5KSI7_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSI7_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 3.830e-34
Identity = 59/86 (68.60%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFT 258
            VTH+G  MCPFTLGRSFTGKEGFPT+A+EVTVDHAGRA+ VT  F G TNDKT +RYD+ V  IR    Y +REYKLR+ +GTE T
Sbjct:  209 VTHIGRNMCPFTLGRSFTGKEGFPTIAYEVTVDHAGRALAVTNGFAGGTNDKTTIRYDSGVNKIRTESQYTEREYKLRKVNGTERT 294
[Close]
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 4.510e-33
Identity = 57/79 (72.15%), Postives = 65/79 (82.28%), Query Frame = 1 
Query:   22 MCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFT 258
            MCPFTLGRSFTGKEGFPT+A+EVTVDH GRA+ VT  FTGATNDKTI+RYD+ V  IR    Y +REYKLR+ +GTE T
Sbjct:    1 MCPFTLGRSFTGKEGFPTIAYEVTVDHVGRALAVTNGFTGATNDKTIIRYDSGVNNIRTESQYTEREYKLRKVNGTERT 79
[Close]
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.690e-32
Identity = 57/86 (66.28%), Postives = 68/86 (79.07%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRADGTEFT 258
            VTH+   MCPFTLGRSFTGKEGFPT+A+EVTVDHA RA+ VT  FTGA NDKT++ YD+ V  IR    Y +R+YKLR+A+GTE T
Sbjct:  174 VTHIDCNMCPFTLGRSFTGKEGFPTIAYEVTVDHASRALAVTNGFTGAMNDKTVIWYDSGVNDIRTESQYTERQYKLRKANGTERT 259
[Close]
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Match: A0A6H5JIW4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIW4_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 7.040e-30
Identity = 53/81 (65.43%), Postives = 61/81 (75.31%), Query Frame = 1 
Query:    1 VTHVGWGMCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRYDAAVQTIRNNKVYKDREYKLRRAD 243
            VTH+GW MCPFTLGR FTGKEGFPT+A+EVTVDHAGR + V   FTGATNDKT +RYD+ V  IR        EYKLR+ +
Sbjct:   74 VTHIGWNMCPFTLGRPFTGKEGFPTIAYEVTVDHAGRTLAVANGFTGATNDKTTIRYDSGVNNIRT-------EYKLRQGE 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG32_9PHAE7.730e-4074.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KH50_9PHAE3.650e-3975.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEF0_9PHAE6.230e-3973.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCU6_9PHAE5.950e-3875.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE1.060e-3674.42DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5K796_9PHAE2.490e-3570.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSI7_9PHAE3.830e-3468.60DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JQM6_9PHAE4.510e-3372.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE4.690e-3266.28DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5JIW4_9PHAE7.040e-3065.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:369636..369893 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size259
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue5.16e-24
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size237
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.225747-CDS-P-littoralis_Contig204:369635..3698721680789999.225747-CDS-P-littoralis_Contig204:369635..369872Pylaiella littoralis U1_48CDSP-littoralis_Contig204 369636..369872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.2355323-UTR-P-littoralis_Contig204:369872..3698931680789999.2355323-UTR-P-littoralis_Contig204:369872..369893Pylaiella littoralis U1_48UTRP-littoralis_Contig204 369873..369893 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.106.1prot_P-littoralis_Contig204.106.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 369636..369872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.106.1

>prot_P-littoralis_Contig204.106.1 ID=prot_P-littoralis_Contig204.106.1|Name=mRNA_P-littoralis_Contig204.106.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=79bp
MCPFTLGRSFTGKEGFPTLAFEVTVDHAGRAIGVTQEFTGATNDKTIVRY
DAAVQTIRNNKVYKDREYKLRRADGTEFT
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mRNA from alignment at P-littoralis_Contig204:369636..369893-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.106.1 ID=mRNA_P-littoralis_Contig204.106.1|Name=mRNA_P-littoralis_Contig204.106.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=258bp|location=Sequence derived from alignment at P-littoralis_Contig204:369636..369893- (Pylaiella littoralis U1_48)
GTCACTCACGTCGGCTGGGGCATGTGTCCGTTCACCCTTGGCCGTTCTTT
CACGGGCAAGGAGGGGTTTCCAACCCTGGCGTTCGAGGTTACCGTCGACC
ACGCGGGGCGCGCCATTGGCGTCACCCAAGAGTTCACCGGTGCGACCAAC
GACAAGACGATCGTCCGCTACGACGCAGCCGTACAGACCATCAGGAACAA
CAAAGTGTACAAGGATCGAGAGTACAAGCTCAGGAGGGCGGATGGCACGG
AGTTCACC
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Coding sequence (CDS) from alignment at P-littoralis_Contig204:369636..369893-

>mRNA_P-littoralis_Contig204.106.1 ID=mRNA_P-littoralis_Contig204.106.1|Name=mRNA_P-littoralis_Contig204.106.1|organism=Pylaiella littoralis U1_48|type=CDS|length=237bp|location=Sequence derived from alignment at P-littoralis_Contig204:369636..369893- (Pylaiella littoralis U1_48)
ATGTGTCCGTTCACCCTTGGCCGTTCTTTCACGGGCAAGGAGGGGTTTCC
AACCCTGGCGTTCGAGGTTACCGTCGACCACGCGGGGCGCGCCATTGGCG
TCACCCAAGAGTTCACCGGTGCGACCAACGACAAGACGATCGTCCGCTAC
GACGCAGCCGTACAGACCATCAGGAACAACAAAGTGTACAAGGATCGAGA
GTACAAGCTCAGGAGGGCGGATGGCACGGAGTTCACC
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