mRNA_P-littoralis_Contig204.105.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig204.105.1
Unique NamemRNA_P-littoralis_Contig204.105.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5L135_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L135_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 5.340e-29
Identity = 54/99 (54.55%), Postives = 66/99 (66.67%), Query Frame = 2 
Query:    5 TCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPRPATDPEEYLF-----------NPQHAKLKGQLIESFAYRKKNNDVV*LPTP 268
            TCCILHNMLH+FDG+ VF+E+VDW GSAGLHDP DH P TDFTS+G       +E              +P H +LK QLIESF+YRK++ND+  L  P
Sbjct:   73 TCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSRP 171
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5JQM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQM6_9PHAE)

HSP 1 Score: 109 bits (273), Expect = 1.690e-27
Identity = 57/104 (54.81%), Postives = 66/104 (63.46%), Query Frame = 2 
Query:    2 FTCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPR-----PATDPEEYLF---------NPQHAKLKGQLIESFAYRKKNNDVV*LPTPK 271
            FTCCILHNMLH+FDG+ VF EN DW GSAG HD  +H P TD+TSVG +     P    EE            +P HA+LK QLIESFA+RKK ND+  L  PK
Sbjct:  154 FTCCILHNMLHTFDGLDVFDENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLLPKEGEEEECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWLSRPK 257
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5K5C1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5C1_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 6.040e-27
Identity = 54/100 (54.00%), Postives = 67/100 (67.00%), Query Frame = 2 
Query:    2 FTCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPRPATDPEEYLF-----------NPQHAKLKGQLIESFAYRKKNNDVV*LPTP 268
            +TCCILHNMLH+FDG+ VF+E+VDW GSAGLHDP DH P TDFTS+G       +E              +P H +LK QLIESF+YRK++ND+  L  P
Sbjct:  393 YTCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESFSYRKRHNDITWLSRP 492
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5K796_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K796_9PHAE)

HSP 1 Score: 109 bits (272), Expect = 1.690e-26
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 2 
Query:    2 FTCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPR----PATDPEEYLF----------NPQHAKLKGQLIESFAYRKKNNDVV*LPTPK 271
            FTCCILHNMLH+FDG+ VF+EN DW GSAG HD  +H P TD+TSVG +    P  + E+             +P HA+LK QLIESFA+RKK ND+  L  PK
Sbjct:  265 FTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLPPKEGEKAECGEGGHVRKERHPDHAELKRQLIESFAFRKKINDITWLSRPK 368
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5KEB6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEB6_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 4.450e-25
Identity = 55/104 (52.88%), Postives = 67/104 (64.42%), Query Frame = 2 
Query:    2 FTCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPR----PATDPEEYLF----------NPQHAKLKGQLIESFAYRKKNNDVV*LPTPK 271
            FTCCILHNMLH+FDG+ VF+EN DW GSAG HD  +H P TD+TSVG +    P  + EE             +P HA+ K  LIESFA+RKK ND++ L  PK
Sbjct:  532 FTCCILHNMLHTFDGLDVFEENTDWTGSAGHHDAWEHDPLTDYTSVGSKGVLLPPKEGEEEECGEGGHVRKERHPYHAESKRHLIESFAFRKKINDIIWLSRPK 635
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5JMK5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMK5_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 1.560e-21
Identity = 47/84 (55.95%), Postives = 55/84 (65.48%), Query Frame = 2 
Query:    5 TCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPRPATDPEEYLF-----------NPQHAKLKGQLIESF 223
            TCCILHNMLH+FDG+ VF+E+VDW GSAGLHDP DH P TDFTS+G       +E              +P H +LK QLIESF
Sbjct:   63 TCCILHNMLHTFDGMDVFEEDVDWVGSAGLHDPWDHDPLTDFTSIGSTGKLSEKEGGXXXXESSETIDQHPAHRELKKQLIESF 146
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5L7R0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7R0_9PHAE)

HSP 1 Score: 80.5 bits (197), Expect = 9.870e-17
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:    2 FTCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPRPAT-DPEEYLFNPQHAKLKGQLIESFAYRKKNNDVV*L 259
            FTCCILHNMLHS+D  S  +E  +WAG+AGLH+  +H P  D +SVG + ++   E+          + QLI SF YRK  ND+  L
Sbjct:  109 FTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDMAWL 195
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5JTC6_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTC6_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.140e-16
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:    2 FTCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPRPAT-DPEEYLFNPQHAKLKGQLIESFAYRKKNNDVV*L 259
            FTCCILHNMLHS+D  S  +E  +WAG+AGLH+  +H P  D +SVG + ++   E+          + QLI SF YRK  ND+  L
Sbjct:  154 FTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 240
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5JAU4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAU4_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 6.700e-16
Identity = 40/87 (45.98%), Postives = 53/87 (60.92%), Query Frame = 2 
Query:    2 FTCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPRPAT-DPEEYLFNPQHAKLKGQLIESFAYRKKNNDVV*L 259
            FTCCILHNMLHS+D  S  +E  +WAG+AGLH+  +H P  D +SVG + ++   E+          + QLI SF YRK  ND+  L
Sbjct:  395 FTCCILHNMLHSYDNKSEMEEEPNWAGNAGLHNAWEHNPSLDLSSVGAKGSSASTEDVEVESGFNTRRKQLIASFVYRKSKNDIAWL 481
[Close]
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Match: A0A6H5K872_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K872_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 1.510e-15
Identity = 43/87 (49.43%), Postives = 52/87 (59.77%), Query Frame = 2 
Query:    2 FTCCILHNMLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPR----PATDPEEY---------LFNPQHAKLKGQLIESF 223
            FTCCI HNMLH+FDG+ +F+EN DW GSAG HD  +  P  D+TSVG +    P  D E+               HA+LK QLIESF
Sbjct:  306 FTCCIRHNMLHTFDGLDLFEENTDWTGSAGHHDAWERDPLMDYTSVGSKGVLLPPKDGEKEERGEGGHVRKERQDHAELKKQLIESF 392
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig204.105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
A0A6H5L135_9PHAE5.340e-2954.55Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JQM6_9PHAE1.690e-2754.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5C1_9PHAE6.040e-2754.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K796_9PHAE1.690e-2653.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KEB6_9PHAE4.450e-2552.88DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JMK5_9PHAE1.560e-2155.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L7R0_9PHAE9.870e-1745.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTC6_9PHAE1.140e-1645.98DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JAU4_9PHAE6.700e-1645.98Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K872_9PHAE1.510e-1549.43DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig204contigP-littoralis_Contig204:368555..368846 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FSK2
PFAMsPlant_tran
Model size292
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.98e-07
EggNOG OGs2E2RF@1|root,2S9YA@2759|Eukaryota
DescriptionPlant transposon protein
Cds size231
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.1757045-UTR-P-littoralis_Contig204:368554..3685901680789999.1757045-UTR-P-littoralis_Contig204:368554..368590Pylaiella littoralis U1_48UTRP-littoralis_Contig204 368555..368590 -
1680789999.1971529-UTR-P-littoralis_Contig204:368821..3688461680789999.1971529-UTR-P-littoralis_Contig204:368821..368846Pylaiella littoralis U1_48UTRP-littoralis_Contig204 368822..368846 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789999.185597-CDS-P-littoralis_Contig204:368590..3688211680789999.185597-CDS-P-littoralis_Contig204:368590..368821Pylaiella littoralis U1_48CDSP-littoralis_Contig204 368591..368821 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig204.105.1prot_P-littoralis_Contig204.105.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig204 368591..368821 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig204.105.1

>prot_P-littoralis_Contig204.105.1 ID=prot_P-littoralis_Contig204.105.1|Name=mRNA_P-littoralis_Contig204.105.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=77bp
MLHSFDGISVFKENVDWAGSAGLHDPKDHAPDTDFTSVGPRPATDPEEYL
FNPQHAKLKGQLIESFAYRKKNNDVV*
back to top

mRNA from alignment at P-littoralis_Contig204:368555..368846-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig204.105.1 ID=mRNA_P-littoralis_Contig204.105.1|Name=mRNA_P-littoralis_Contig204.105.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=292bp|location=Sequence derived from alignment at P-littoralis_Contig204:368555..368846- (Pylaiella littoralis U1_48)
CTTCACGTGCTGCATTCTCCACAACATGCTCCACTCCTTCGACGGCATTA
GCGTGTTCAAGGAGAACGTCGACTGGGCAGGCAGCGCTGGTCTGCACGAC
CCCAAGGACCACGCCCCAGACACGGACTTCACGTCGGTCGGGCCGAGGCC
GGCAACCGACCCGGAGGAGTACTTGTTCAATCCGCAACATGCAAAGCTGA
AGGGCCAGCTGATCGAGAGTTTTGCCTACCGCAAGAAAAACAATGACGTT
GTCTAGCTCCCTACGCCCAAGTAGAGTTGAGGTGATTTGGAT
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig204:368555..368846-

>mRNA_P-littoralis_Contig204.105.1 ID=mRNA_P-littoralis_Contig204.105.1|Name=mRNA_P-littoralis_Contig204.105.1|organism=Pylaiella littoralis U1_48|type=CDS|length=231bp|location=Sequence derived from alignment at P-littoralis_Contig204:368555..368846- (Pylaiella littoralis U1_48)
ATGCTCCACTCCTTCGACGGCATTAGCGTGTTCAAGGAGAACGTCGACTG
GGCAGGCAGCGCTGGTCTGCACGACCCCAAGGACCACGCCCCAGACACGG
ACTTCACGTCGGTCGGGCCGAGGCCGGCAACCGACCCGGAGGAGTACTTG
TTCAATCCGCAACATGCAAAGCTGAAGGGCCAGCTGATCGAGAGTTTTGC
CTACCGCAAGAAAAACAATGACGTTGTCTAG
back to top