mRNA_P-littoralis_Contig203.98.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.98.1
Unique NamemRNA_P-littoralis_Contig203.98.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.98.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:385054..386297 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size596
Hectar predicted targeting categoryother localisation
Exons2
Cds size465
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.3945599-CDS-P-littoralis_Contig203:385053..3851341680789993.3945599-CDS-P-littoralis_Contig203:385053..385134Pylaiella littoralis U1_48CDSP-littoralis_Contig203 385054..385134 -
1680789993.4079125-CDS-P-littoralis_Contig203:385782..3861661680789993.4079125-CDS-P-littoralis_Contig203:385782..386166Pylaiella littoralis U1_48CDSP-littoralis_Contig203 385783..386166 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.420077-UTR-P-littoralis_Contig203:386166..3862971680789993.420077-UTR-P-littoralis_Contig203:386166..386297Pylaiella littoralis U1_48UTRP-littoralis_Contig203 386167..386297 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.98.1prot_P-littoralis_Contig203.98.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 385054..386166 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.98.1

>prot_P-littoralis_Contig203.98.1 ID=prot_P-littoralis_Contig203.98.1|Name=mRNA_P-littoralis_Contig203.98.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=155bp
MCTYHSTQMDRKSGKEKTCPTRTISHVARESILKTSEVGMGIISSCSSRC
KERKRLTYIEKGSRRKEKSERIVRLHRQPHLTLSPTRKSATHRRFMYDDR
YSRQKSNVTAHSTSTLVYHKNTPVLSRERTRQLKHYENCFSRPHGDYDYP
RSTLP
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mRNA from alignment at P-littoralis_Contig203:385054..386297-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.98.1 ID=mRNA_P-littoralis_Contig203.98.1|Name=mRNA_P-littoralis_Contig203.98.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1244bp|location=Sequence derived from alignment at P-littoralis_Contig203:385054..386297- (Pylaiella littoralis U1_48)
CGGAGTACAAGTACCTGTCTGAAAATCAGCACGGGGCATCTTTCCAACAC
GATGGCCTGCAGCAGCCTTGTTTTTTCACACAACAAACTGCAGCAGCATT
TCATTCGGTGTAATTCGGGACCACGTCCGTGATGTGTACCTATCACAGTA
CGCAAATGGATCGGAAAAGTGGAAAAGAAAAAACTTGCCCCACCCGGACG
ATCAGTCATGTCGCCCGCGAAAGTATTTTGAAGACATCGGAGGTCGGGAT
GGGGATTATCTCTTCTTGTTCGAGCCGATGCAAAGAGCGAAAGCGCCTCA
CATACATCGAGAAAGGGAGCAGGCGAAAAGAGAAATCAGAGCGAATCGTA
CGCCTCCACCGCCAGCCACACCTGACGCTCAGCCCAACCCGAAAGTCCGC
CACCCATCGGAGATTCATGTATGACGATCGTTACTCACGCCAAAAAAGTA
ACGTTACCGCGCACAGCACTTCAACCCTGGTTTATCATAAAAATACTCCC
GTGTTGTCACGTGAAGCGACGAGGGGGTGGGGGGGGCACAAGGCAGGGCA
GAACGGGGAGGGAGAACCGAGATGGTGTCCTCCAGAATCAAACCCTCCCA
CCAAAGCGTACTCCGCCACGAAGCGCCGAAAACCTTCGGCAAAAAAAAAT
CAATAACTCGCTGTCTCATCCGTATCATACATGTATGCACGACACTGCTG
CGCGTGCTTTCAAACACCCACAGCTTGAATGCAACCCCCCCCCCAGTCCC
CCCTCACCCCCCCCCCCTCCTCCAACATAACGCTCAAAGCCAGCGCCGGC
ATCATCCCCGACTACATCTGCCATCCAGCTTCTCTCCACCCCGCCTTTCA
CGCTGCCAACTGACAAAACAATAACAAAAAAAAGTGTAGGTTTTGCTACA
GATGTGTGGGCTTTCAAAAGCCATGGACCGAAAAAAAAGCGTGGCTCTTG
ACACCCTCCCCTCCCCCCCTGCGTCCTCATCAACAAAACGCCCCACCTCT
CCATGCGTCCCCCCCCCTCTTCTCTTCTTCCACCTCCTGGAAAAGCGAAA
ACATACTTGGCAAACAGAGGTGGGCGCAGACAGGGGGAGGGGGGCGGTAG
TGGAACGTGCGGTTTAGCGCCCCTCCTTCCAACCACACCCCTGCCCCCTC
ACGTCCAAATCAGCGAACACGCCAACTAAAACACTACGAAAACTGTTTCA
GCCGTCCCCACGGGGACTACGATTACCCACGATCCACTCTTCCA
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Coding sequence (CDS) from alignment at P-littoralis_Contig203:385054..386297-

>mRNA_P-littoralis_Contig203.98.1 ID=mRNA_P-littoralis_Contig203.98.1|Name=mRNA_P-littoralis_Contig203.98.1|organism=Pylaiella littoralis U1_48|type=CDS|length=465bp|location=Sequence derived from alignment at P-littoralis_Contig203:385054..386297- (Pylaiella littoralis U1_48)
ATGTGTACCTATCACAGTACGCAAATGGATCGGAAAAGTGGAAAAGAAAA
AACTTGCCCCACCCGGACGATCAGTCATGTCGCCCGCGAAAGTATTTTGA
AGACATCGGAGGTCGGGATGGGGATTATCTCTTCTTGTTCGAGCCGATGC
AAAGAGCGAAAGCGCCTCACATACATCGAGAAAGGGAGCAGGCGAAAAGA
GAAATCAGAGCGAATCGTACGCCTCCACCGCCAGCCACACCTGACGCTCA
GCCCAACCCGAAAGTCCGCCACCCATCGGAGATTCATGTATGACGATCGT
TACTCACGCCAAAAAAGTAACGTTACCGCGCACAGCACTTCAACCCTGGT
TTATCATAAAAATACTCCCGTGTTGTCACGTGAACGAACACGCCAACTAA
AACACTACGAAAACTGTTTCAGCCGTCCCCACGGGGACTACGATTACCCA
CGATCCACTCTTCCA
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