mRNA_P-littoralis_Contig203.93.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.93.2
Unique NamemRNA_P-littoralis_Contig203.93.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 5.370e-87
Identity = 140/143 (97.90%), Postives = 142/143 (99.30%), Query Frame = 1 
Query:   82 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 510
            MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVV RDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREIL+RIRE+EKLD
Sbjct:    1 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILDRIREVEKLD 143
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 247 bits (631), Expect = 5.560e-76
Identity = 123/143 (86.01%), Postives = 139/143 (97.20%), Query Frame = 1 
Query:   82 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 510
            MIRFLLLQNRQGKTRLSKW+IPL+DE+EK +IEN+VHRLVV+RDRKYTNF+EY +YK+IYRRYAGLFFT G+DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNKVYNILDEFILSGEV+ES+K EIL+R+RELEKL+
Sbjct:    1 MIRFLLLQNRQGKTRLSKWYIPLYDEQEKNKIENDVHRLVVSRDRKYTNFIEYQSYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNKVYNILDEFILSGEVQESAKPEILDRVRELEKLE 143
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 221 bits (563), Expect = 7.480e-66
Identity = 108/142 (76.06%), Postives = 128/142 (90.14%), Query Frame = 1 
Query:   79 IMIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEK 504
            IMIRF LLQNRQGKTRLSKW++    ++EK R+E E+HRLVV RDRKYT+F+E+  YKL+YRRYAGLFFT G+DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNKVY ILDEFIL+GE++E+SK+EILERI+E+EK
Sbjct:    3 IMIRFFLLQNRQGKTRLSKWYVAPAQDREKSRLEAEIHRLVVGRDRKYTSFIEFMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNKVYGILDEFILAGEIQETSKKEILERIKEVEK 144
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: F0W4M2_9STRA (AP-2 complex subunit sigma n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0W4M2_9STRA)

HSP 1 Score: 219 bits (559), Expect = 1.460e-64
Identity = 107/145 (73.79%), Postives = 132/145 (91.03%), Query Frame = 1 
Query:   76 LIMIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 510
            L MIRF LLQNRQGKTRLSKW++P  D++EK R+ENE+HRLVV+RD K+TNF+E+ +YKLIYRRYAGLFF  G+D++ NELL+LET+HLFVELL+  FSNVCELDIVFNFNKVY++LDE+IL GEV+E+SKRE+L+RIRELEKL+
Sbjct:   53 LDMIRFFLLQNRQGKTRLSKWYVPAPDDQEKFRLENEIHRLVVSRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 197
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: A0A024GMS7_9STRA (AP complex subunit sigma n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GMS7_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.490e-63
Identity = 103/143 (72.03%), Postives = 131/143 (91.61%), Query Frame = 1 
Query:   82 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 510
            MIRF L+QNRQGKTRLSKW++P  D++EK R+E+E+HRLV++RD K+TNF+E+ +YKLIYRRYAGLFF  G+D++ NELL+LET+HLFVELL+  FSNVCELDIVFNFNKVY++LDE+IL GEV+E+SKRE+L+RIRELEKL+
Sbjct:   33 MIRFFLMQNRQGKTRLSKWYVPAPDDQEKFRLEHEIHRLVISRDAKHTNFIEFRSYKLIYRRYAGLFFILGVDLHANELLSLETIHLFVELLDQQFSNVCELDIVFNFNKVYSMLDEYILGGEVQETSKREMLDRIRELEKLE 175
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 213 bits (543), Expect = 6.990e-63
Identity = 107/150 (71.33%), Postives = 128/150 (85.33%), Query Frame = 1 
Query:   82 MIRFLLLQNRQGKTRLSKWWIPLHD-------EKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 510
            MIRF LLQNRQGKTRLSKW++P          E EK RIE+EVHRLV +RD+KYTNF+EY +YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+VY ILDE+IL+GE+EE+SK+EIL+R++ LEKL+
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPSSTGGGSPEAEKARIESEVHRLVTSRDKKYTNFIEYASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNRVYMILDEYILAGEIEETSKKEILDRVKVLEKLE 150
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 213 bits (542), Expect = 1.080e-62
Identity = 109/153 (71.24%), Postives = 128/153 (83.66%), Query Frame = 1 
Query:   82 MIRFLLLQNRQGKTRLSKWWIP----------LHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 510
            MIRF LLQNRQGKTRLSKW++P           + E EKVRIE E HRLV  RD+KYTNF+EY +YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDEF+L+GE+EE+SKREIL+R++ LEK++
Sbjct:    1 MIRFFLLQNRQGKTRLSKWYVPPPTQTQSGTTANAEAEKVRIEAECHRLVTARDKKYTNFIEYNSYKLIYRRYAGLFFTIAVDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEFMLAGELEETSKREILDRVKMLEKME 153
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: A0A4D9D180_9STRA (AP complex subunit sigma n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D180_9STRA)

HSP 1 Score: 213 bits (541), Expect = 1.290e-62
Identity = 105/140 (75.00%), Postives = 126/140 (90.00%), Query Frame = 1 
Query:   82 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELE 501
            MIRFLLLQNRQGKTRLSKW+I   +E EK R+E +VH+L+V+RDRKYTNFVEY  YKLIYRRYAGL+F+ G+DV DNEL  LE++HLFVELL+ YF NVCELDIVFNFNKVY+ILDEFIL+GE++E+SKREILERIR+++
Sbjct:    1 MIRFLLLQNRQGKTRLSKWYILPPNEAEKFRLEADVHKLIVSRDRKYTNFVEYQNYKLIYRRYAGLYFSLGVDVTDNELAYLESIHLFVELLDEYFRNVCELDIVFNFNKVYSILDEFILAGEIQETSKREILERIRDMQ 140
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: A0A7S2UVB6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UVB6_9STRA)

HSP 1 Score: 212 bits (539), Expect = 2.150e-62
Identity = 104/143 (72.73%), Postives = 129/143 (90.21%), Query Frame = 1 
Query:   82 MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 510
            MIRFLL+QNRQGKTRLSKW+IP  +++EK R+E E++RLV++RDRKYTNF+EY ++KLIYRRYAGL+F  G+DV DNEL  LET+H  VELL+SYFSNVCELDIVF+FNKVY+ILDE+IL+GEV E++K EILER+RELEKL+
Sbjct:    1 MIRFLLMQNRQGKTRLSKWYIPSPEDQEKARMELEINRLVLSRDRKYTNFIEYHSFKLIYRRYAGLYFIMGVDVGDNELGILETIHFMVELLDSYFSNVCELDIVFHFNKVYSILDEYILAGEVMETNKNEILERVRELEKLE 143
[Close]
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Match: A0A7S2A2C1_TRICV (AP-2 complex subunit sigma n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2C1_TRICV)

HSP 1 Score: 214 bits (545), Expect = 4.510e-62
Identity = 108/152 (71.05%), Postives = 128/152 (84.21%), Query Frame = 1 
Query:   82 MIRFLLLQNRQGKTRLSKWWIP---------LHDEKEKVRIENEVHRLVVNRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD 510
            MIRF LLQNRQGKTRLSKW++P            E EK RIE++VHRLV +RD+KYTNF+EY  YKLIYRRYAGLFFT  +DVNDNEL  LET+HLFVELL+SYFSNVCELDIVFNFNKVY+ILDE++L+GE+ E+SKREILER++ LEK++
Sbjct:   77 MIRFFLLQNRQGKTRLSKWYVPPPSSPTNKDASPEAEKARIESDVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNKVYSILDEYMLAGEIGETSKREILERVKVLEKVE 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.93.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI5.370e-8797.90AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA5.560e-7686.01AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA7.480e-6676.06AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
F0W4M2_9STRA1.460e-6473.79AP-2 complex subunit sigma n=1 Tax=Albugo laibachi... [more]
A0A024GMS7_9STRA1.490e-6372.03AP complex subunit sigma n=1 Tax=Albugo candida Ta... [more]
A0A7S0FJC4_9STRA6.990e-6371.33AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
A0A7S3L6S1_9STRA1.080e-6271.24AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
A0A4D9D180_9STRA1.290e-6275.00AP complex subunit sigma n=1 Tax=Nannochloropsis s... [more]
A0A7S2UVB6_9STRA2.150e-6272.73AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
A0A7S2A2C1_TRICV4.510e-6271.05AP-2 complex subunit sigma n=1 Tax=Trieres chinens... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:363922..370432 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LQX3
Preferred nameap2s1
PFAMsClat_adaptor_s
Model size1829
Max annot lvl2759|Eukaryota
KEGG koko:K11481,ko:K11827
KEGG Pathwayko04114,ko04144,ko04721,ko04914,ko04961,ko05016,map04114,map04144,map04721,map04914,map04961,map05016
Hectar predicted targeting categorymitochondrion
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005886,GO:0005905,GO:0005933,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0010171,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030276,GO:0030427,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0042763,GO:0042764,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045334,GO:0046907,GO:0048475,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072583,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0099568
Exons5
Evalue1.01e-93
EggNOG OGsCOG5030@1|root,KOG0935@2759|Eukaryota
Ec32 ortholog descriptionLongin-like domain
Ec32 orthologEc-07_001920.1
EC2.7.11.1
Descriptionprotein transporter activity
Cds size432
COG categoryU
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03036,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.93.2prot_P-littoralis_Contig203.93.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 364003..369116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.1177156-UTR-P-littoralis_Contig203:363921..3640021680789996.1177156-UTR-P-littoralis_Contig203:363921..364002Pylaiella littoralis U1_48UTRP-littoralis_Contig203 363922..364002 +
1680789996.1750047-UTR-P-littoralis_Contig203:369116..3704321680789996.1750047-UTR-P-littoralis_Contig203:369116..370432Pylaiella littoralis U1_48UTRP-littoralis_Contig203 369117..370432 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789996.129912-CDS-P-littoralis_Contig203:364002..3640051680789996.129912-CDS-P-littoralis_Contig203:364002..364005Pylaiella littoralis U1_48CDSP-littoralis_Contig203 364003..364005 +
1680789996.1384406-CDS-P-littoralis_Contig203:365886..3659701680789996.1384406-CDS-P-littoralis_Contig203:365886..365970Pylaiella littoralis U1_48CDSP-littoralis_Contig203 365887..365970 +
1680789996.1474612-CDS-P-littoralis_Contig203:367176..3672451680789996.1474612-CDS-P-littoralis_Contig203:367176..367245Pylaiella littoralis U1_48CDSP-littoralis_Contig203 367177..367245 +
1680789996.1563516-CDS-P-littoralis_Contig203:368086..3682601680789996.1563516-CDS-P-littoralis_Contig203:368086..368260Pylaiella littoralis U1_48CDSP-littoralis_Contig203 368087..368260 +
1680789996.1650953-CDS-P-littoralis_Contig203:369014..3691161680789996.1650953-CDS-P-littoralis_Contig203:369014..369116Pylaiella littoralis U1_48CDSP-littoralis_Contig203 369015..369116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.93.2

>prot_P-littoralis_Contig203.93.2 ID=prot_P-littoralis_Contig203.93.2|Name=mRNA_P-littoralis_Contig203.93.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MIRFLLLQNRQGKTRLSKWWIPLHDEKEKVRIENEVHRLVVNRDRKYTNF
VEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVC
ELDIVFNFNKVYNILDEFILSGEVEESSKREILERIRELEKLD*
back to top

mRNA from alignment at P-littoralis_Contig203:363922..370432+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.93.2 ID=mRNA_P-littoralis_Contig203.93.2|Name=mRNA_P-littoralis_Contig203.93.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6511bp|location=Sequence derived from alignment at P-littoralis_Contig203:363922..370432+ (Pylaiella littoralis U1_48)
CGTCAGCGTGGCATTTTCTGCTGCCTGAGAGAGCTTGCTGCTCCTCAGCC
AGACGAGGCAGGGAAGTTCTTTCACCTCATCATGGTGAGAGCTTGTCGGT
TGGTCGGAGGTAGTAGGTATTAGAGTGCGGGGTGTCTGCGAATCAACGTA
CACTCACACGAGTTGACCGCCCTCGTCCTCTCGCCATGCTGTTCGAAATA
ACTGCCGTTGTGAGGGCTCGAAGCGGCACATGAGCGGCGGCAGGCCCCGC
TGCAGCTGCAATCGGTGTTACTGGCTCGCAGCCGTTGCTTGTACAGCTGC
TGTTCCATACAGCACAGCAGGGTTCATGTCAATAATCGCAAGTGTGCTGT
AGATCGACTGATCACAGCAGGGCAGGAGAATGCTCGTCTCATTGAAAGCT
TTGTTTTCAACTCAGATTTATCGTCCGGAGACCGTCACCTTCAACGGGAT
GTACCGCCGTATGATATCTCCTATTGTGCGTTTATCGGTCCGAACGACAC
AGCAGCAGTTGCGCCATACAGCAGTACCACACCCAGCACGGCTTTTACCA
TGCGCGAGTGTATGATACGTACTCGTAGCAGCGCTCCAGATGGATGGGAT
TTATAGCAGAGTAGAGCACTGCAGGACAGAGAGTCCGATATAGGCGGCAC
ACTAACGCTATATCGGGGTTCATCGGTGACAATCGATTTATGTACTGCTG
TACCGCTATTGAGGGTTCCGCTATCACACATCGGGACGCTGACTCTGTAC
ATCAGTGTGCAGCAGTTCTCATTTTCCAGCGGTGACGGCGGATGCTGCCT
GCGCCTTTTGACGCATTTCCTCTGGAGGCCAGTCTATCTCCCATCGGACG
TGCGTGTCTGTCTCTTGGTCTTGAGGATTCAAAAGAGCTTATTTTGATAA
GGCTCAAATGAGGAAGGACTGTTGCCCGTGCGTGCGCGATCACCTAGCCC
CGAACGCCATGTAGTAGCTACGTGTGCGTCGGCACATTCAGATCTACTGC
TGGGGCAAGAAGGTCGCAGCAGTGGCTCAAAACTCCGCAAAAACCACAGT
TCAGAAGATTGGTGCCAATGGCGGCTAGTACGGCTGCGTCAAACGTTTGG
TGTCAGTCTGGATAGCGGAGTTTTTCAGGGATCCTGCGGAGTTTTTGAGC
CACTGCTGCTGCGACCTTCGATATTTGAGCCCCAGCAGCAGATACGAACG
CGCGGACGCACGCGTAGCTCCTTCATGACGTTCTCTCCTGGTCAGAACTG
GGCGATCGCGAACGCACACGGACAACAGCAGTCCTTATTTGATCCTGTAT
CAATATAAGCTCTGACTTGATTGAAGAATGAGAATTATATTTCAGATAAA
AAATATGGGGTTTTTTTACCCCCCCCCCCTTGTCAGTGAACCCTCAATCG
CAACGCGTTTTTTTGTCGTTCTGTCGCTTTCCCGGTGAAACACACACAAC
CGCCCGCCTCGGAACTTCTCTGCTGCACACCCATCTATGTACAAAACAAT
AACCATGCATGCATGCGTGCACGAGAGTGGAGTTGGCCACCGTGAAGCAA
CTACCGCTAAATATCACCGATGATCGAACGGGCGCGCATTTGGAAGCACA
GCAGAGGGTACTGTATTTCCTCAGCAGCACCGCGTCCACTGCTGCAGTTT
ACCCTTGTTGGCTCCTCCCGTGATCGACTGGAATCGCGTGTTTGAGTTTG
TCAGTGCAGCGGTCGAGGGCTCCCAGCAATGCCGACACACTGCTGTTGTA
ATGTACCCCACTTTTTGCGTGCCAGCCGATTATGCAAGCCGGCAGCACCC
GGGAGCCTCGGCACTGCTGCTTTCTGCGCTTCTCGAGACCCGTCGATGCG
TTTCGTTTTCTGTACTACTGCTGCTGTAATGACTTCGCCCAACCCCATGT
GTCCCTTCTCGCTACCGCCTCTCCTCGGGAAAAAAAAAAAACGACCTCGA
AATGAAATGAAACAGATTCGTTTCCTGTTGCTGCAAAACCGTCAGGGCAA
GACCCGCCTCTCCAAGTGGTGGATACCCTTGCACGACGAAAAAGAGAAGG
TGAGCTGGTGCCTGCACCCCCCGGAGCCAAACGCGGTGGTGGCACAGCAT
GGTACGAAAGCTTTGCGAGACGTGTCAAGCTACGCCGATGTTTCAGGTTT
CTCGAGGGCGTCCACTGCTGTACCACTATTATTATGGCACCGGGGGGGTG
ATGCCAACGTCCAACGTCCAACTCCTTGCTTTCCGCAAAAACCCTCCGAC
TTTGGTCAAAGACGCACAACAGCAGTAGTATCTCCTCTGCTCAGGCACCC
TAAATATCGCACCATAAAGGTTGTTTCACGAGCTGTAGCGTCGCAGAAAG
TCCATGCACCGCGTCAAACCCTCTGGTCAACCACCTGTCTGCGTGCTTTC
CGAGAAACGAAAATCGGCTGGCAGTCTTACCGCGCATTGTGAGGGGAGGG
GGGGGGGGGTTCGTAACGTGTCGTACTTTACTGCTTCTATGAGAACATTT
CACAATGACAGTCGAAGCGTACTATGTTTTTCGTTTTTGGTGTTAGCGCC
CATGTATTTGGTCGATACCCGTGCACGTGCACACACTCGCACTGAAGACT
CCATCCATCAGGAGGGGGACCGCTCTTGCGGTGGTGGCATCAGCAGCGGT
GCAGCTTCAGCAGCAGCAGCAGCAGCAGCAGCAGCCGGCTGCTGTTGGTG
ATTGAAGAAGCAATCGCCAACGGACAGCAGCTTTAGTGCCAAGTCCGTCT
ACACACCAGCCGGCTCCGAAGTCGTTTCATACCATGACACCGGTGGCGTC
GATGGCGCGTTCAAAAATCCGTACTTGTGCTGATGCGCCATCGACACCAT
CGGTGTTTTGTCATGTGCGGGACCTTTTGGTGTCCGATTGATTCGGTACT
CCAGCTGCTGTCCGTCGACATCCGCGTGTTGAACCACACCCTGCTGCTGA
AGCTGGATCGCCGTTGAGGCATGTCGCCGGCACACATTCGTCAGAATTTC
AGCGGTTGTGCTGGGGACCTAATCGGACACAGCAGTGCACGGAATTTCGC
ACACGGCTACCCAAACCTCTCTTACCCCCTCCCTCCGTGCGCCTCCGAAC
GATTAAAACCTTGGGCTTCGAATGTTGGAAACCCTCTCCTTGTGTCGGAA
CGAAGGTGCGCCGGCGTGTGGTACATCTCAGTGAGTCTAACCCCCCCCCC
CTCCTGTTTTCCCGATTATCGTGCTCATGTTTGCGATGTCCGAACGTTCG
TGAAGGTTCGAATCGAAAACGAAGTGCACCGGTTGGTGGTGAACCGCGAT
CGGAAGTACACAAACTTTGTAGAGGTGAGGATCGGGAGTGGGGGTGGCCG
TGGCGGGAGTCGGGGGGGGCGGGGGGGCAAAGACGAGGACGGGGGAATTA
TTAATGGAGAGAGAGATATGTGATTCAAGGAGGTACTGCTGTAAATGCAC
TTTAGTCTGGAAGTGTGTTCCTTTGCCGCCCCGTTTATTTGAACGTTAAC
GGTGCAATGGATTTTTCTCGGGGTGTGGCACGTGTCTCCCGCCTTGCCAA
ATGGTGCGCGCGCAAGCGTCGAGAGGGGGGGGTGGTGTCTCCAGTACGTG
GACACGATTTAGCGGTGGGCAGGGTCGGGAGAAACCGAAGTGGGGGTGAA
AAAAACACCGGGGGGGCGAGAGAGGGTTGAAGGCACAGAGAACGGGGGGT
AAGGAAGAGAGGAGAGGGTGAGAAGAGATACGAAGGCACAGAGGGAGAGA
GGAAGCGATTGGCTCGCCGGGGGGGAAAAACGCAGTCGTGCAGAAGGAAA
TCAACCAACCAACCAACCGTGGGAGACAGCAAAAATTTTAGTTGTTGGAG
CGAGACGAAAATTCATCATCGCGCTAACAGAGTGACAGAGTGGCTGCCGA
GCCAAGTATACAAACGTGTCTAGTTTCACAAGGTTGCCCCCCCCCCCCCC
CATCCCTCCCAACAACCGTTTCAGGAATCGCCCTGTCACTATTTTCGCGC
CTCCGCTTTTGATTTTTTTTTTCTATTTTAATCCCCCCCGCCCTCCCCCC
CGCGCGCCCACACACTTCTCTGTCCCTTTCCCCCGCTGCCGCTGCCGCTG
CCGCAACTTGGGGGTTGTGCTCTCGCTTTTTCTCATCGGCCGACCGCGGT
GACCACCATGTGTAGTACGGCACGTACAAGCTCATCTACCGGCGGTACGC
GGGGCTGTTCTTCACGTTCGGGATGGACGTCAACGACAACGAGCTCTTGG
CGCTGGAGACCGTGCACCTGTTCGTTGAGCTGCTCGAGTCATACTTCTCC
AACGTCTGCGAGCTGGACATCGTCTTCAACTTTAACAAGGCGCGCTTGAT
AGGAGAGGGGGCGGGCGGGTCGAGGGCAGATAGGCGGGGGCAGACATTTG
GACAACAAGGGGTTAAAACAGAAATTTAAGTATCAACATCAAGCACGTCC
TGTGTGTCTATATGCGACCGACTCTGGATCGATCGGCATTGCCATGTTTT
CAGAAAAAAAAAGGCAACACGATCGTGGGGTCCGTGTGGGAATGGTCATC
GCGAGCGATGGTGTGTAGCGAATACCCCTTGAATGCATTTTTTTATTTTT
TAGGCGGGGCAGGGCAGCGTCCGAGGAATGCGCGTATACTCGGGTGTTTG
TTTGTAGTTTGTGATCATCTTCTTTGCTGCGTGACGCTCATTTCTTCGTT
TACCCATACTCTGCCGTACCCTACATACCCGCGCGCATGGGACGTTTTCG
AATTGCCGTGCTGCTTTGTTTGTCAGCGGTTCCCCTACAAGTAAATAAAT
TTTTTAGACGCTCGAGTGTTCCCGATACAGGTACGCCCGCCCCCCCCCCC
TCCTTTTCCCCTTTTTCGCCATACTGCTGTCAGCCTCCTCGCCCCCCCTT
TCCCCTTATGCAGTACAGCAGCATAATCCTCTCTATACAGCAGTATGATA
TACTCCAATATCATGTTTTATCCTCTCACGCCTCTTTCTTGCCCTCAATG
AAGCCCCCCTCCTCGGCCGAAATTTCCTGTGACTTCTCCCGAACAATCAA
TGGGCCATTCCACCCACGATGCGGCTGGGTTAATTCAATCTAGGTGTACA
ACATTCTGGACGAGTTCATCCTCAGCGGTGAGGTGGAGGAGAGCAGCAAG
CGAGAGATCCTGGAGCGAATCAGAGAGCTGGAAAAGTTGGACTAGCTTTG
TTGGGCGCATGATGAGCGAGAGGTTAGGGCAGTACATACTCTCAATAGAC
GTGATGAACGTTTGAGACGTGAATCGCAAGGTCATGAGTGAACGTAGATT
CCGACTGCTCGTACTGCAGACAGATGTACAATACAGGGGTAAGTACTGTA
CGGGGGTCGCGCCTGCGTGTGTGTGTGTGCGAGTGTGTGAGTGTGTGGAT
GTGTTTTTTTTGCCGGCTCATGATTTTGTTTATTTTACTTGTACATGTTT
TTTGTATGCGTGTGGCGGCAGTGCTTGTGTACGAGTACACGAGTCAAGAC
AGCGGTATCAATCGGCGTCAGCTAGCAGAGATAGACGCGACCCTAACTTC
GATCCCGTGTATGAACGCTGCGAGAGCGAGCGGTGCTGTTCCTGCACTTC
AAAGAAAAGTGTGAGCGAAACGGCGGGCGCCCGGCACTCGAAAGTTTTCG
TTGTTGTTGTTGTTGTTGTTGTTGAGGGCGTCCTCCCTCGGTTGGTTGCT
CAAAACATCCCTCTCGTGGTTGATTGATTGGTGTTGATTGCCGGTCGGGG
TATGGTTATAGTGTGTGTTGTGACGTCGTGCGTTGCGTGGGCCTCTGGTC
CCCCCTCCGCCGACACGAAAGGGCATGCATGCGTGCGTGAGCGTGCGTGC
CAGCAAAGACGTACGAGAGACAGGTATAGGCTCAGCGCATCTGATGCCCT
CGGCGTCCGTCCGTCCGTCCGTCCGTCCGTCGACGCGTCTCGGGAAGGGC
ATGCGGCGGGTGGACGGTGGTGTTTGACTGATTGCGTCTTGTTCTTCCTC
GATCGGGCCTGTTGCATCGCATCGCATCGCATCGCATCCCCCCCCCCCGC
GCCCCCACGAGACGCTTCGTATGCTATGCTGGTAGGCAACCCGCCCGCCC
CCTCGCACTCCCACTCAAAAACTATTCATGGCTGACCGATACGCAACCTT
TCATGAACAATTCGATGAATGTTCGGCCTCTATCTCTCTCCGAAGTCTTC
GCCGGTAGGTTATACAGCCGAGCGTACCGATTTGATAGGACCGTGGTATG
AGGCGCGCTGATTGATGATGGTGCCGCCTCGACAAAATCGCGTCAAATGA
GTTTTTATGCGGGAGAGCGAGCGGGCCTGCGGTCTCGCCGTGTATTGCAA
GGCATTGGTGTATAACCTCTCTTGTCGTACCTCTCATTTGGGAGCTGGAT
GGACACTTGCAGTGCGTTGCAAAATGTGGCCAATGTCTCGGACAGACAGA
CAGACAAACACCGGAGACTTCTGAAACTCCAATCCTTGCAAAGGTTAGTT
TTCTGTGTTGG
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig203:363922..370432+

>mRNA_P-littoralis_Contig203.93.2 ID=mRNA_P-littoralis_Contig203.93.2|Name=mRNA_P-littoralis_Contig203.93.2|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig203:363922..370432+ (Pylaiella littoralis U1_48)
ATGATTCGTTTCCTGTTGCTGCAAAACCGTCAGGGCAAGACCCGCCTCTC
CAAGTGGTGGATACCCTTGCACGACGAAAAAGAGAAGGTTCGAATCGAAA
ACGAAGTGCACCGGTTGGTGGTGAACCGCGATCGGAAGTACACAAACTTT
GTAGAGTACGGCACGTACAAGCTCATCTACCGGCGGTACGCGGGGCTGTT
CTTCACGTTCGGGATGGACGTCAACGACAACGAGCTCTTGGCGCTGGAGA
CCGTGCACCTGTTCGTTGAGCTGCTCGAGTCATACTTCTCCAACGTCTGC
GAGCTGGACATCGTCTTCAACTTTAACAAGGTGTACAACATTCTGGACGA
GTTCATCCTCAGCGGTGAGGTGGAGGAGAGCAGCAAGCGAGAGATCCTGG
AGCGAATCAGAGAGCTGGAAAAGTTGGACTAG
back to top