mRNA_P-littoralis_Contig203.90.1 (mRNA) Pylaiella littoralis U1_48
|
Overview
Homology
BLAST of mRNA_P-littoralis_Contig203.90.1 vs. uniprot
Match: D8LQX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX2_ECTSI) HSP 1 Score: 492 bits (1266), Expect = 7.920e-150 Identity = 488/1290 (37.83%), Postives = 583/1290 (45.19%), Query Frame = 3
Query: 114 MAYLGWGVEVFWPPEGDDTEGSWYRGRLDRYDDVGGTGYHVAYDDGDEETLGVDVEGRDDVRLLSPPPRXXXXXXXPDGGDP-NPSEGVS-RSDKVPGAEDEXXXXXXXGCQRGIDR--------TGRGFAAMSYREIERPASPRESGGSSGGTVYENGEERSRDRSSRKRLPDGG-RGG--GGTRDRHDALEYPMAPYHNGSSMNSSASDYTPDDDDDFVXXXXXXXXXXXXXXXEEAEIFGPRYGRNDRGSYGTDSGGEYEEGGREAGGAAGDGEDSDNSGSLSLSLYRNSSEWTPLRGTEFVAPPSRQGRSGDWSSESAAEEKAFPARSESAAATRATTAAMSTTEACISALRSAVEASTTGGFYAGGNRKPPLQHDHGPQAGRGRIGHAAXXXXXXXXXXXXXXXVEEGLRALGGFVHDTALLKGAVDGVE-----GGGVGMKAXXXXXXXXXX-VNVSFIDGGGGHGTAATTANAMFRCKTLLHTTGSAPASRGSGSHGGGGWPDGEFECETFHGGRLCELANASVLFSAHRRAIGK-GVTTAGGGLDREGFLGQASQAGSDGGSGSSNIRI----NNIXXXXXXXXXXXXXXXXDGVDNSXXXXXXXXXXXXXXXXLWRSLRGEISGTFPTVGRRGRISTDEAADVAAGKMPLRLRLRLSVSLMLRTPEGFAGSAQRSQKHPPARIVREHAEAAA-AAAPYATVGAALRGPAPPNSGMAFEDN--RKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNSPQSVF--------LRHHGAALTKQRLKRQQDIARENERMERRLKVIRGVTAPQSAHRHSYYDRAAEKALVPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCVDNKNNDKNSNGKGNAAGGQKDNV-WRELYHEREALISAVETAAAEAXXXXXKVDALRAKALWTEANARSASLAVASLERALERRGNGGGNGRHG-------------ATLAASTSGAGAVSHPAESDISR--GVVEETLSAELRRQEELYKALVEARRGAVTAGEASRLARVSDLAELDNLRAQLAQAEARQERYQWRHRQ----GRKAAAAADSGQRHADRKDAXXXXXXXXXGRQEEKARTIDSILLSRVAAEKPDYDDAADSQDSALPKDALERAQDLALSLRVEVETLRLEEAMGEGAGTXXDAGRDKAASSRALREAQEEVASLKARVESKTRRLELATFDRDAIRAEYQHWVSTGQRSALKESLAWLEHATIHLSKT 3818
MA++G VEVFWPPEGDDTEG+WY G LD YDD GYHV YDDGDEE LG ++GRDD+ LL PDGGD NP EGV+ R D PG +E G QRG TG G AAMSYREI RPASP + GS+ ERSR RS+ D G + G G TR+R P + N S S ++ +DDDD E A GP G RG G R S TP E + + R+GD ++ G GG+ P E+GL+AL GFVHDTA+L+GAV+GVE GG ++A V +SFI+GG A+T NAMFRCKTLLHTTGS+ + S GWPDGEF+CETFHGGRL ELANA+VLFS HRR GK G T+ G LDREGFLGQ + G + I + +S WR LRG++SG F R GR+ T AG PL L+LRLSVS L+ PE A + + + EA AAAPYATVGA R P PP+ G+ F++ R+ + HGAAL ++++KRQ+ IARENERMERRLKVIR A + Y+R VP XXXX C D+ ++ G AA G+K+ WRELY EREAL SAVE AAA XX +V+ALRAK LWTEANAR +SL VASLE NG HG A +AA +SGA DI G+VEE L+AELRRQEELY AL EARR V AGEA+RLAR +DL ELD LR++L +AEAR R+QWR XXXXXXXXX R+A + + LPKDALERA+DLALSLRVEVETLRLEEA+G G+G + A RA +AQ+EVA LKAR+++KTRRLE A FDRDAIRAEYQH + GQRSALKESLAWLEHA + LS T
Sbjct: 1 MAHVGQRVEVFWPPEGDDTEGNWYCGELDGYDDA--AGYHVTYDDGDEEVLGEQIDGRDDIHLLP-------LWSPPDGGDNRNPPEGVAHRRDDKPGVPEEEGENGRIG-QRGKATSEPDSPTPTGSGLAAMSYREIGRPASPPDCDGSNTSPRSNLSMERSRHRSAGNVADDNGFQSGEFGKTRERTATK-----PTGRDGAGNRSGSAWSSNDDDDDKGAIDYDSFDFGSEDEELASPRGPEPGTALRGCRGR----------------------------------RRSGVGTPGENHESLPCRTSPWRTGDGRTDGR-------------------------------------------GAVVGGSDNP-----------------------------------EDGLKALEGFVHDTAMLQGAVEGVERGRGGGGTAALRADGETAGEEGVFVKISFIEGG-----LASTTNAMFRCKTLLHTTGSSAPATCSAGXXXXGWPDGEFQCETFHGGRLGELANAAVLFSVHRRWCGKRGATSRG--LDREGFLGQVVLPVRNAVLGLQPVDIAPGPQKSGVDKEEAATGTHARPSINISSSDDDNNDGIIRNNTDSGSWRLLRGDVSGAFRAADRLGRVET-------AGNAPLVLQLRLSVSFSLKPPEDLACPTEPRNRAAAQTMGGYPKEAVGTAAAPYATVGAE-REPVPPHGGVVFDETGARRAGKPGGLGLADMPTRSAGRARGKGDRRTTRAKRGGGHANSGGGNRDWRAHDHGAALLRRKVKRQECIARENERMERRLKVIR--EAVPNTREPRCYERVGRAPCVPRGGGAAGGAGVGFTEQPRHRXXXXQRSDGTVVGGLQGEAPPHAAGVRSTVESGSNRRRVGHPVVAGCWDSTT--PSAGGGEAAAAGKKETAGWRELYDEREALASAVEAAAAXXXXVRARVEALRAKTLWTEANARRSSLTVASLE-----------NGAHGRCASSRTTGKEVSAVVAAESSGAVVAFDRRTLDIDDEGGLVEEGLAAELRRQEELYTALAEARRRVVAAGEAARLAREADLKELDELRSRLTEAEARHTRHQWRRENETVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLALDGVEXXXXXXXXXXTLPKDALERAKDLALSLRVEVETLRLEEALGAGSGADVNV----AGVGRAPSDAQDEVARLKARLKNKTRRLEGAIFDRDAIRAEYQHLIGKGQRSALKESLAWLEHAALQLSDT 1129
BLAST of mRNA_P-littoralis_Contig203.90.1 vs. uniprot
Match: A0A6H5KVJ5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVJ5_9PHAE) HSP 1 Score: 175 bits (444), Expect = 7.650e-43 Identity = 208/448 (46.43%), Postives = 238/448 (53.12%), Query Frame = 3
Query: 2385 RLKRQQDIARENERMERRLKVIRGVTAPQSAHRHSYYDRAAEKALVPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSCVDNKNNDKNSNGKGNAAGGQKDNV-WRELYHEREALISAVETAAAEAXXXXXKVDALRAKALWTEANARSASLAVASLERALERRGNGGGNGRHG-------------ATLAASTSGAGAVSHPAESDISR--GVVEETLSAELRRQEELYKALVEARRGAVTAGEASRLARVSDLAELDNLRAQLAQAEARQERYQWRHRQGRKAAAAADSGQRHADRKDAXXXXXXXXXGRQEEKART----------IDSILLSRVAAEKPDYDDAADSQDS-ALPKDALERAQDLALSLRVEVETLRLEEAMGEGAGTXXDAGRDKAASSRALREAQEEV 3647
R+KRQ+ IARENERMERRLKVIR A + Y R VP XXXXXXXXXXXXXXXXXXXX C D+ S G G AA K WRELY EREAL SAVE AAA XX +V+ALRAK LWTEANAR +SL+VASLE NG HG A A++SGAG V DI G+VEE L+AELRRQEELYKAL E+RR V AGEA+RLAR +DL ELD LR++L +AEARQ R+QWR R+ XXXXXXXX R +E++ T +R+A + D + ALPKDALERAQDLALSLRVEVETLRLEEA+G G G + A RA +AQEEV
Sbjct: 100 RVKRQECIARENERMERRLKVIR--EAAPNPREPRCYKRVGRAPCVPRGGGAXXXXXXXXXXXXXXXXXXXXRSDGPVAEGLHGDAPPHAAGVRSTVESGNNRRRGGHQVAAGCWDSTTP---SAGSGEAAAAGKVTAGWRELYDEREALASAVEAAAAXXXXVRARVEALRAKTLWTEANARRSSLSVASLE-----------NGAHGRCASSRTTGKEVSAVETANSSGAGVVFDRRTLDIDGDGGLVEEGLAAELRRQEELYKALAESRRRTVAAGEAARLAREADLKELDELRSRLTEAEARQTRHQWR-RENETVTTXXXX-----XXXXXXXXXXXXXSPRDDERSPTRAAGXXXXXXXXXXXAARLALDGVKEDRGGXXXXAGALPKDALERAQDLALSLRVEVETLRLEEALGAGTGADVNV----AGLGRAPSDAQEEV 521 The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_P-littoralis_Contig203.90.1 >prot_P-littoralis_Contig203.90.1 ID=prot_P-littoralis_Contig203.90.1|Name=mRNA_P-littoralis_Contig203.90.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=1236bp MAYLGWGVEVFWPPEGDDTEGSWYRGRLDRYDDVGGTGYHVAYDDGDEETback to top mRNA from alignment at P-littoralis_Contig203:347915..363638- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_P-littoralis_Contig203.90.1 ID=mRNA_P-littoralis_Contig203.90.1|Name=mRNA_P-littoralis_Contig203.90.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=15724bp|location=Sequence derived from alignment at P-littoralis_Contig203:347915..363638- (Pylaiella littoralis U1_48)back to top Coding sequence (CDS) from alignment at P-littoralis_Contig203:347915..363638- >mRNA_P-littoralis_Contig203.90.1 ID=mRNA_P-littoralis_Contig203.90.1|Name=mRNA_P-littoralis_Contig203.90.1|organism=Pylaiella littoralis U1_48|type=CDS|length=3708bp|location=Sequence derived from alignment at P-littoralis_Contig203:347915..363638- (Pylaiella littoralis U1_48)back to top |