mRNA_P-littoralis_Contig203.73.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.73.1
Unique NamemRNA_P-littoralis_Contig203.73.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig203.73.1 vs. uniprot
Match: A0A6H5KUY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY0_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 5.130e-38
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 1 
Query:    1 DRMRKTIWKNKANLGDAQLFQFVPAYYASMSVKDSGTTFENEGKGAQSVRRYEDFTAMGFLKWLDETASFTNLPSWLDKDIMGRNAFGPDILDKAKADGTKGVLFDESALTLWRGKFQDTACHIRGVWN 387
            +RM+ T W +K N+G A LFQF+P +YA MSVK+SG  +    + A++V+ Y+ F    FL+WL E   FT  P+WL KDIMGRN+ GP IL +A   GT+G L+DE+  +LWR +F D    +R  WN
Sbjct:   19 NRMKGTNWGDKPNVGHASLFQFLPGFYAGMSVKESGKCYSESDRNAEAVKVYKSFAVPAFLRWLVEKYDFTTTPAWLTKDIMGRNSMGPKILLEAANKGTQGKLYDETEASLWRTRFGDVLLALRSDWN 147
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.73.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUY0_9PHAE5.130e-3847.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:279560..281920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size394
Hectar predicted targeting categoryother localisation
Exons2
Cds size387
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789995.2915127-CDS-P-littoralis_Contig203:279559..2796571680789995.2915127-CDS-P-littoralis_Contig203:279559..279657Pylaiella littoralis U1_48CDSP-littoralis_Contig203 279560..279657 -
1680789995.3027344-CDS-P-littoralis_Contig203:281625..2819141680789995.3027344-CDS-P-littoralis_Contig203:281625..281914Pylaiella littoralis U1_48CDSP-littoralis_Contig203 281626..281914 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789995.311035-UTR-P-littoralis_Contig203:281914..2819201680789995.311035-UTR-P-littoralis_Contig203:281914..281920Pylaiella littoralis U1_48UTRP-littoralis_Contig203 281915..281920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.73.1prot_P-littoralis_Contig203.73.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 279560..281914 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.73.1

>prot_P-littoralis_Contig203.73.1 ID=prot_P-littoralis_Contig203.73.1|Name=mRNA_P-littoralis_Contig203.73.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=129bp
MRKTIWKNKANLGDAQLFQFVPAYYASMSVKDSGTTFENEGKGAQSVRRY
EDFTAMGFLKWLDETASFTNLPSWLDKDIMGRNAFGPDILDKAKADGTKG
VLFDESALTLWRGKFQDTACHIRGVWNPI
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mRNA from alignment at P-littoralis_Contig203:279560..281920-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.73.1 ID=mRNA_P-littoralis_Contig203.73.1|Name=mRNA_P-littoralis_Contig203.73.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2361bp|location=Sequence derived from alignment at P-littoralis_Contig203:279560..281920- (Pylaiella littoralis U1_48)
GACCGAATGCGAAAGACGATCTGGAAAAACAAGGCCAACCTTGGGGACGC
TCAGCTCTTCCAGTTCGTCCCGGCGTACTATGCTTCCATGAGCGTAAAGG
ATAGCGGCACCACCTTCGAAAACGAAGGGAAGGGCGCGCAATCGGTCCGA
CGTTATGAAGATTTCACGGCCATGGGCTTCCTCAAGTGGTTGGACGAGAC
GGCCAGCTTTACGAACCTCCCATCCTGGTTGGACAAGGACATTATGGGGC
GCAACGCGTTCGGACCAGACATACTGGACAAGGCCAAGGCCGACGGTGAG
ATGGGCTTGGCGGGCACGGCGTACATGCATTTTTGCAATTTTGCCCCTCT
GCTGCAGAGAGATCTGCATGAGCCGCTGTGGACAATCGCAGCCGCCAGTC
GTGTAAGTTTGTCGAGTCTGATGTAGCTCGGACTGCGATAAACAATGCGA
AGATCAAGTACAGCAGGAGTACAGCAGTAATGTTGTTGTGGCCGCCGGTT
TGGCGGCGGTGTCAGACCATCCTCTCTCCGAGATGGATCCAGTTTACGTT
CAACCGCTGCCTCTCGAGCATAACCGCAGGGAGTTGACGTGTTCACGGTG
TGGCTTCGGTATACTGCGCGCGATACCCAGCTCGCACTGCGGCATTGATC
GCGACACGGAGCGCTCTTCGGCCGCTTACATCCCTTTCATAAAAACAGCA
TCACGAAATAGTAGCAGCAGACGTACCAGTGGGTTGGGGTTGAGACGCAG
TGTGCGTTGGAGGGCCGCTTCTCAAATAACTGCGTTGAGCCGTGTGCGTT
GCTGTTTGGTGGCGTATAATATGCCTACTGCTTCACAGCAGTGCTGCTGC
TGCAGATCAGCTGGTGATGTGTTGGCGGTGTGTACGTGTGCGCCAGCACA
ACGAACACAAAACATCTCTCATCATTTTCCACAAAAAAGGGAACCCAATA
TTGACGCGCCTGACAAGATAGCTGTGCGCACAGGACACGGGCTGCGGTGA
ACCCAGCAGCAGAGGGTAGACGCTATTTACCGCATCACTTCAAGCCCTTT
GGTCGTAGTGATCTGTGCTGAACTGGTGTCAAAGTGTTGCAAAACGTGGC
CATAATCTCGGACACACACACAGACAGGTACCGAAAACCTCAAAAATGAA
ATAAAGGTACCCCTGTCTCCGATTGTTTTCTTTATTCACACATACACTCA
CACCTTCACATTACGACAAGTCGGTATGAATTCGAAGCAGTTCGACAAGG
AACTCACACTTTGCTTCGCTCGTGGCCTGCTTCTCGCTAAAGTAAACGCC
AACGAATGCCAGCACACGTCATGCATTTCGCACAACAGGAAACTCAGCGG
AAGCAACAGCAGCAGCACGCTTCTCACCGCTATGGTGTGCATTATCCTGA
GACCATGCCTAATCCCGGAACTCCTTGCGCGGTAAAGGCGTTTCAGCCTC
CCCTCTCGTGCTTGCCTTGTACTACGGCAGTAGCTATGGCGAAAATGTAT
CTAAGAGGCGAACCTCAACGTTTGGCATTTCGCGTGAGAACACCCCTAGG
ATTGGATCTATCTTCGCCCATCCGCCCCCAAGAAACTTCACTGTAACGAT
AATTTCGAAAAACCCCTTGTGACACCTTTGGCAAGTATTTTGTACTTCGT
AAACGAAAGAGCGTGTGTTCGTCCCAATTTTACTAGGTACCAGTCCACGC
CTTTCGGTATGAAGTAGGTACATCAGCCGGGGTCACACAAAAGGAGGGTC
ACGCACGAGCTTTATAGTTTTTTGTTTTGTTTGAATGCCTCACACCTTTC
CTCCTGTGGCTCTTGCCTTTGGTTTTGAATGCGAGTCGGGTTCAGCAATC
CGGGGTTCAGCAATCCGTTCCCTCTGTTTAATTAGTCACGAACAAATCGC
TTTACGGCTCTTTTGAATTCACAGCAGTGATGCCAAAACCGCAAGAAGAA
TCTCGAAGGAAAGAAACACTTGGGTGAAACGCATGAAGAAAAACAAAAAA
AAGTGCGCAAACTGTGTCTCGTAGGGAAGGCGTTTTATGATTTGTTTTAA
GATCCCCCCGGGGCAAATCAAAGGTGTCATGCTTCAAGGCTGAAAAGTAA
TAGGTAGGGGTGACACCATACGGGGGAGTACGACAACGGTCTCTACGGTA
TTTACAGATTCAAGTCGTTTTGCAGTCTGCCGTCGCACACCGAACGAATG
AAAAGCTCATGTAAACCCTGCACTTGCTATGTATTCCCCGTGTACTTTCT
TAACTTCACACAGGCACGAAGGGGGTTCTGTTTGACGAATCGGCCCTAAC
CCTTTGGCGGGGGAAGTTCCAAGATACAGCCTGTCACATCCGGGGCGTAT
GGAACCCTATT
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Coding sequence (CDS) from alignment at P-littoralis_Contig203:279560..281920-

>mRNA_P-littoralis_Contig203.73.1 ID=mRNA_P-littoralis_Contig203.73.1|Name=mRNA_P-littoralis_Contig203.73.1|organism=Pylaiella littoralis U1_48|type=CDS|length=387bp|location=Sequence derived from alignment at P-littoralis_Contig203:279560..281920- (Pylaiella littoralis U1_48)
ATGCGAAAGACGATCTGGAAAAACAAGGCCAACCTTGGGGACGCTCAGCT
CTTCCAGTTCGTCCCGGCGTACTATGCTTCCATGAGCGTAAAGGATAGCG
GCACCACCTTCGAAAACGAAGGGAAGGGCGCGCAATCGGTCCGACGTTAT
GAAGATTTCACGGCCATGGGCTTCCTCAAGTGGTTGGACGAGACGGCCAG
CTTTACGAACCTCCCATCCTGGTTGGACAAGGACATTATGGGGCGCAACG
CGTTCGGACCAGACATACTGGACAAGGCCAAGGCCGACGGCACGAAGGGG
GTTCTGTTTGACGAATCGGCCCTAACCCTTTGGCGGGGGAAGTTCCAAGA
TACAGCCTGTCACATCCGGGGCGTATGGAACCCTATT
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