mRNA_P-littoralis_Contig203.72.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.72.1
Unique NamemRNA_P-littoralis_Contig203.72.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig203.72.1 vs. uniprot
Match: A0A6H5KUY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY0_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 1.050e-31
Identity = 53/106 (50.00%), Postives = 74/106 (69.81%), Query Frame = 2 
Query:   11 EWVLDRMRKTIWKNKANLGDAQLFQFVPAYYASMSVKESGTTFDDEGKGAQSVRRYEDFTAMGFLKWLDETANFTNLPSWLDKDIMGRNAFGPDILNKAKADGTKG 328
            +WV++RM+ T W +K N+G A LFQF+P +YA MSVKESG  + +  + A++V+ Y+ F    FL+WL E  +FT  P+WL KDIMGRN+ GP IL +A   GT+G
Sbjct:   15 DWVINRMKGTNWGDKPNVGHASLFQFLPGFYAGMSVKESGKCYSESDRNAEAVKVYKSFAVPAFLRWLVEKYDFTTTPAWLTKDIMGRNSMGPKILLEAANKGTQG 120
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.72.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KUY0_9PHAE1.050e-3150.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:274760..277120 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size415
Hectar predicted targeting categoryother localisation
Exons2
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789995.2289226-UTR-P-littoralis_Contig203:274759..2747871680789995.2289226-UTR-P-littoralis_Contig203:274759..274787Pylaiella littoralis U1_48UTRP-littoralis_Contig203 274760..274787 +
1680789995.262353-UTR-P-littoralis_Contig203:277057..2771201680789995.262353-UTR-P-littoralis_Contig203:277057..277120Pylaiella littoralis U1_48UTRP-littoralis_Contig203 277058..277120 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789995.2387319-CDS-P-littoralis_Contig203:274787..2750761680789995.2387319-CDS-P-littoralis_Contig203:274787..275076Pylaiella littoralis U1_48CDSP-littoralis_Contig203 274788..275076 +
1680789995.2488081-CDS-P-littoralis_Contig203:277022..2770571680789995.2488081-CDS-P-littoralis_Contig203:277022..277057Pylaiella littoralis U1_48CDSP-littoralis_Contig203 277023..277057 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.72.1prot_P-littoralis_Contig203.72.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 274788..277057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.72.1

>prot_P-littoralis_Contig203.72.1 ID=prot_P-littoralis_Contig203.72.1|Name=mRNA_P-littoralis_Contig203.72.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=108bp
MRKTIWKNKANLGDAQLFQFVPAYYASMSVKESGTTFDDEGKGAQSVRRY
EDFTAMGFLKWLDETANFTNLPSWLDKDIMGRNAFGPDILNKAKADGTKG
FCLTNRP*
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mRNA from alignment at P-littoralis_Contig203:274760..277120+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.72.1 ID=mRNA_P-littoralis_Contig203.72.1|Name=mRNA_P-littoralis_Contig203.72.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=2361bp|location=Sequence derived from alignment at P-littoralis_Contig203:274760..277120+ (Pylaiella littoralis U1_48)
CCAAGCCGTGGAATGGGTCCTTGACCGAATGCGAAAGACGATCTGGAAAA
ACAAGGCCAACCTTGGGGACGCTCAGCTCTTCCAGTTCGTCCCGGCGTAC
TATGCTTCCATGAGCGTAAAGGAGAGCGGCACCACCTTCGATGACGAAGG
GAAGGGCGCGCAATCGGTCCGACGTTATGAAGATTTCACGGCCATGGGCT
TCCTCAAGTGGTTGGACGAGACGGCCAACTTTACGAACCTCCCATCCTGG
TTGGACAAGGACATTATGGGGCGCAACGCGTTCGGACCAGACATACTGAA
CAAGGCCAAGGCCGACGGTGAGATGGGCTTGGCGGGCACGGCGTACATGC
ATTTTTGCAATTTTGCCCCTCTGCTGCAGAGAGATCTGCATGAGCCGCTG
TGGACAATCGCAGCCGCCAGTCGTATAAGTTTGTCGAGTCTGATGTAGCT
CGGACTGCGATAAACAATGCGAAGATCAAGTACAGCAGGAGTACAGCAGT
AATGTTGTTGTGGCCGCCGGTTTGGCGGCGGTGTCAGACCATCCTCTCTC
CGAGATGGATCCAGTTTACGTTCAACCGCTGCCTCTCGAGCATAACCGCA
GGGAGTTGACGTGTTCACGGTGTGGCGTCGGTATACTGCGCACGATACCC
AGCTCGCACTGCGGCATTGATCGCGACACGGAGCGCTCTTCGGCCGCTTA
CATCCCTTTCATAAAAACAGCATCACGAAATAGTAGCAGCAGACGTACCA
GTGGGTTGGAGTTGAGACGCAGTGTGCGTTGGAGGGCCGCTTCTCAAATA
ACTGCGTTGAGCCGTGTGCGTCGCTGTTTGGTGGCGTATAATATGCCTAC
TGCTTCGCAGCAGTGCTGCTGCTGCAGAACAGCTGGTGATGTGTTGGCGG
TGTGTGCGTGTGCGCCAGCACAACGAACACAAAACATCTCTCATCATTTT
TCACAAAAAAGGGAACCCAATATTAACGCGCCTGACAAGATAGCTGTGCG
CACAGGACACGGGCTGCGGTGAACCCAGTAGCAGAGGGTAGACCtTATTT
ACCTCATCATTTCAAGCCCTTGGTCGTAGCGATCTGTGCTGAACTGGTGT
CAAAGTGTTGCAAAACGTGGCCATAATCTCGGACACACACAGACAGGTAC
CGAAAACCTCAAAAATGAAATAAAGGCACCCCTGTCTCCGATTGTTTTTT
TTATTCACACATACACTCACACCTTCACATTACGACAAGTCGGTATGAAT
TCGAAGCAGTTCGACAAGGAACTCACACTTTGCTTCGCTCGTGGCCTGCT
TCTCGCTAAAGTAAATGCCAACGAATACCAGCACACGTCATGCATTTCGC
ACAACAGGAAACTCAGCGGAAGCAACAGCAGCAGCACGCTTCTCACCGCT
ATGGTGTGCATTATCCTGAGACCATGCCTAATCCCGGAACTCCTTGCGTG
GTAAAGGCGTTTCAGCCTCCCCTCTCGTGCCTGCCTTGTACTACGGCAGT
AGCTATGGCGAAAATGTATCTAAGAGGCGAACCTCAACGTTTGGCATTTC
GCGTGAGAACACCCCTACGATTGGATCTATCTTCGCCCATCCGCCCCCAA
GAAACTTCACTGTAACGATAATTTCGAAACACCCCTTGTGACACCTTTGG
CAAGTATTTTTTACTTCGTAAACGAAAGAGCGTGTGTTCGTCCCAATTTT
ACTGGGTACCAGTCCACACCTTTCGGTATGAAGTAGGTGCATCAGCCGGG
GTCACACAAAAGAGGGTCACGCACGAGCTTTCTAGTTTTTTGTTTTGTTT
GAATGCCTCACACCTTTCCTCCTGTGGCTCTTGCCTTTGGTTTTGAATGC
GAGTCGGGTTCAGCAATCCGTTCCCTCTGTTTAATTAGTCACGAACAAAT
CGCTTTACGGCTCTTTTGAATTCACAGTGATGCCAAAACCGCAAGAAGAA
TCTCAAAGGAAAAAAACACTTGGGTGGAACGCATAAAGAAAAACAAAAAA
AAGTGCGCAAACTGTGTCTCGTAGGGAAGGCGTTTTATGATTTGTTTTAA
GATCCCCCCGGGGCAAATCAAAGGTGTCATGCTTCAAGGCTGAAAAGTAA
TAGGTAGGGGTGACACCATACGGGGGAGTACGACAACGGTCTCTACGGTA
TTTACAGATTCAAATCGTTTTGCAGTCTGCCGTCGCACACCAAACGAATG
AAAAGCTCATGTAAACCCTGCACTTGCTATGTATTCCCCGTGTACTTTCT
TAACTTCACACAGGCACGAAGGGGTTCTGTTTGACGAATCGGCCCTAACC
CTTTGGCGGGGGAAGTTCCAAGATACAGCCTGTCACATCCGGGGCGTATG
GAACCCTATTT
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Coding sequence (CDS) from alignment at P-littoralis_Contig203:274760..277120+

>mRNA_P-littoralis_Contig203.72.1 ID=mRNA_P-littoralis_Contig203.72.1|Name=mRNA_P-littoralis_Contig203.72.1|organism=Pylaiella littoralis U1_48|type=CDS|length=324bp|location=Sequence derived from alignment at P-littoralis_Contig203:274760..277120+ (Pylaiella littoralis U1_48)
ATGCGAAAGACGATCTGGAAAAACAAGGCCAACCTTGGGGACGCTCAGCT
CTTCCAGTTCGTCCCGGCGTACTATGCTTCCATGAGCGTAAAGGAGAGCG
GCACCACCTTCGATGACGAAGGGAAGGGCGCGCAATCGGTCCGACGTTAT
GAAGATTTCACGGCCATGGGCTTCCTCAAGTGGTTGGACGAGACGGCCAA
CTTTACGAACCTCCCATCCTGGTTGGACAAGGACATTATGGGGCGCAACG
CGTTCGGACCAGACATACTGAACAAGGCCAAGGCCGACGGCACGAAGGGG
TTCTGTTTGACGAATCGGCCCTAA
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