mRNA_P-littoralis_Contig203.62.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.62.1
Unique NamemRNA_P-littoralis_Contig203.62.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.62.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:222028..223497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LQY7
PFAMsTPR_10,TPR_12
Model size593
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons2
Evalue2.25e-07
EggNOG OGsCOG0457@1|root,KOG1840@2759|Eukaryota
Descriptiondetermination of stomach left/right asymmetry
Cds size591
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789994.888392-CDS-P-littoralis_Contig203:222027..2221381680789994.888392-CDS-P-littoralis_Contig203:222027..222138Pylaiella littoralis U1_48CDSP-littoralis_Contig203 222028..222138 +
1680789994.9011877-CDS-P-littoralis_Contig203:223017..2234971680789994.9011877-CDS-P-littoralis_Contig203:223017..223497Pylaiella littoralis U1_48CDSP-littoralis_Contig203 223018..223497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.62.1prot_P-littoralis_Contig203.62.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 222028..223497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.62.1

>prot_P-littoralis_Contig203.62.1 ID=prot_P-littoralis_Contig203.62.1|Name=mRNA_P-littoralis_Contig203.62.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=197bp
REWGQQWPSSSSFGGSRFDSAGSQARSLRRKNKRMGQNAPLSSVSRDVRG
SHFWGGAITPVSASAYARSAYGFSRANEGLARQRSITPVGPPPPAGTGVR
RGWGGAFFDSMSSGGSFSSSGCYPQSLGGRGGRYFGMGSGGTGKNNLDSA
RRRGPGSGAHTWRSQPELDRAVVDKGSHRYFSSSSSSSSSSTAGYAG
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mRNA from alignment at P-littoralis_Contig203:222028..223497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.62.1 ID=mRNA_P-littoralis_Contig203.62.1|Name=mRNA_P-littoralis_Contig203.62.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=1470bp|location=Sequence derived from alignment at P-littoralis_Contig203:222028..223497+ (Pylaiella littoralis U1_48)
CGGGAATGGGGACAACAGTGGCCGTCATCTTCGTCGTTCGGGGGGAGTAG
ATTCGACTCTGCGGGCTCACAGGCGCGGTCGTTGAGGCGGAAGAACAAAA
GGATGGGCCAGGTTTGTCGCAAAATGTACTGCTGTGCATGGTTTGTTCCC
GCCGTTGTGATACCTTTACAACTTAGGCGTGTGCACAAACCACTCTCCAA
CACGCACGTTTTTACCGGATCCCCGACCCGGCCCTACCCAAGAACAACGG
GAAGACTGTTTATTTCTTTTTTGTGACAGGGCGTGCCTTCCCGCCCGATA
GATGGGATGGGATGGGATGGAGTACGGGAAAATCAGTCAAAGCGTTTTTC
ATGTTTCTTGCAATTTTAGCAGCAGTGCAATGTTGCAGGTCTTTCCCCAA
AACCATCGCAGCATGTGAAGCATTTTGTACGGATGGGAGATGGGGATCGC
ACAGGGTGTTGGGTCGGTGAAAAAACGAGAGCCGAGACCCTGTGCTCGTC
TGCAGGCGGAGAAAGAGGTTGTGCCCGTGCTGCAGAATGCTCAGCGGGAC
AGGTTATTGAATTGGAGGAGTGCTCAGCATGCTCATGACTACATGTCGTA
CCGTCAAAAGGAAAGGCAAAGTACTGCGAGAGTGTGTGTGATAATAGACG
AGACTCGTACGGGAACGTCGGTGATTGTCTGAAGCTGAAAGCGCCTTAAG
CAGCAACCGCACCCTATCGTATCACACGGCAGTTTGAGTTCGGTGCGTCG
TGCCAGGAGTCTTCTGGCGCTCCATCGCCCGCAGGAGTCTAGAAGACAAA
GGAGATGCGAGGACCTGGTTCAGTACAGTATCAGTTGTCTTTTGCTCTCA
CTCTTGGTTTTTTATTGTGTAACGTACCAGGTACAGCATATTTGAAGCAC
ACACACACTCACACCTTTACATTCTTGGAAATACATCCTACCTGACCGCC
ACTTTCTTTTTTCTATCTTTGCTCTATACCCCCCCAACAGAACGCCCCGT
TGTCCAGCGTCAGCAGGGACGTGAGGGGAAGCCACTTCTGGGGAGGCGCG
ATCACTCCGGTGTCCGCCTCGGCATACGCCAGGAGTGCGTACGGCTTCAG
CAGGGCGAATGAAGGCCTCGCTCGCCAGCGCAGCATCACTCCCGTGGGCC
CGCCGCCCCCGGCAGGCACCGGGGTTCGCCGCGGGTGGGGCGGAGCGTTT
TTCGACTCCATGTCGAGCGGGGGGAGCTTCAGCAGCAGCGGCTGCTACCC
GCAGTCTTTGGGCGGCCGGGGCGGTCGGTACTTCGGCATGGGTAGCGGTG
GCACCGGCAAGAACAACCTTGACTCTGCCAGACGGCGGGGTCCCGGTTCC
GGGGCGCATACTTGGAGAAGCCAACCGGAACTAGATCGAGCGGTCGTGGA
CAAGGGCAGCCACCGTTATTTTAGCAGCAGCAGCAGCAGCAGTAGCAGTA
GCACTGCCGGCTATGCGGGG
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Coding sequence (CDS) from alignment at P-littoralis_Contig203:222028..223497+

>mRNA_P-littoralis_Contig203.62.1 ID=mRNA_P-littoralis_Contig203.62.1|Name=mRNA_P-littoralis_Contig203.62.1|organism=Pylaiella littoralis U1_48|type=CDS|length=591bp|location=Sequence derived from alignment at P-littoralis_Contig203:222028..223497+ (Pylaiella littoralis U1_48)
CGGGAATGGGGACAACAGTGGCCGTCATCTTCGTCGTTCGGGGGGAGTAG
ATTCGACTCTGCGGGCTCACAGGCGCGGTCGTTGAGGCGGAAGAACAAAA
GGATGGGCCAGAACGCCCCGTTGTCCAGCGTCAGCAGGGACGTGAGGGGA
AGCCACTTCTGGGGAGGCGCGATCACTCCGGTGTCCGCCTCGGCATACGC
CAGGAGTGCGTACGGCTTCAGCAGGGCGAATGAAGGCCTCGCTCGCCAGC
GCAGCATCACTCCCGTGGGCCCGCCGCCCCCGGCAGGCACCGGGGTTCGC
CGCGGGTGGGGCGGAGCGTTTTTCGACTCCATGTCGAGCGGGGGGAGCTT
CAGCAGCAGCGGCTGCTACCCGCAGTCTTTGGGCGGCCGGGGCGGTCGGT
ACTTCGGCATGGGTAGCGGTGGCACCGGCAAGAACAACCTTGACTCTGCC
AGACGGCGGGGTCCCGGTTCCGGGGCGCATACTTGGAGAAGCCAACCGGA
ACTAGATCGAGCGGTCGTGGACAAGGGCAGCCACCGTTATTTTAGCAGCA
GCAGCAGCAGCAGTAGCAGTAGCACTGCCGGCTATGCGGGG
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