mRNA_P-littoralis_Contig203.43.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.43.2
Unique NamemRNA_P-littoralis_Contig203.43.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
[Close]
BLAST of mRNA_P-littoralis_Contig203.43.2 vs. uniprot
Match: D8LQZ1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQZ1_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 1.850e-36
Identity = 67/83 (80.72%), Postives = 76/83 (91.57%), Query Frame = 3 
Query:  198 GAPGAMEDDILMELVGQDYGMMALLRNDKFKGLIVLLRNVPPNEWVSEVARAYPDDDEVKGMMGQVGKLMRMIDYYQAKKLKK 446
            GA GA+ED++L +LVGQDYGM+ALLRNDKFKGLIVLLRN+PP+EWV+EVAR YPDDDEVK MMGQVGKLMRMIDYYQ  + KK
Sbjct:  146 GASGAIEDELLAQLVGQDYGMLALLRNDKFKGLIVLLRNLPPDEWVAEVARTYPDDDEVKSMMGQVGKLMRMIDYYQKNQPKK 228
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.43.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQZ1_ECTSI1.850e-3680.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:158479..164787 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1094
Hectar predicted targeting categoryother localisation
Exons5
Cds size432
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.43.2prot_P-littoralis_Contig203.43.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 159124..164770 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789994.56842-UTR-P-littoralis_Contig203:158478..1591231680789994.56842-UTR-P-littoralis_Contig203:158478..159123Pylaiella littoralis U1_48UTRP-littoralis_Contig203 158479..159123 -
1680789994.6386347-UTR-P-littoralis_Contig203:164770..1647871680789994.6386347-UTR-P-littoralis_Contig203:164770..164787Pylaiella littoralis U1_48UTRP-littoralis_Contig203 164771..164787 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789994.5781958-CDS-P-littoralis_Contig203:159123..1592011680789994.5781958-CDS-P-littoralis_Contig203:159123..159201Pylaiella littoralis U1_48CDSP-littoralis_Contig203 159124..159201 -
1680789994.5879614-CDS-P-littoralis_Contig203:162229..1622981680789994.5879614-CDS-P-littoralis_Contig203:162229..162298Pylaiella littoralis U1_48CDSP-littoralis_Contig203 162230..162298 -
1680789994.6054094-CDS-P-littoralis_Contig203:163051..1630931680789994.6054094-CDS-P-littoralis_Contig203:163051..163093Pylaiella littoralis U1_48CDSP-littoralis_Contig203 163052..163093 -
1680789994.6170907-CDS-P-littoralis_Contig203:163806..1639081680789994.6170907-CDS-P-littoralis_Contig203:163806..163908Pylaiella littoralis U1_48CDSP-littoralis_Contig203 163807..163908 -
1680789994.6292133-CDS-P-littoralis_Contig203:164629..1647701680789994.6292133-CDS-P-littoralis_Contig203:164629..164770Pylaiella littoralis U1_48CDSP-littoralis_Contig203 164630..164770 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.43.2

>prot_P-littoralis_Contig203.43.2 ID=prot_P-littoralis_Contig203.43.2|Name=mRNA_P-littoralis_Contig203.43.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=144bp
MFIRDEGRRISKAMAVSAAGGEGVEAGGGEGADAGGDASDVAQSQGEGVG
EAARRPVEPVGAPGAMEDDILMELVGQDYGMMALLRNDKFKGLIVLLRNV
PPNEWVSEVARAYPDDDEVKGMMGQVGKLMRMIDYYQAKKLKK*
back to top

mRNA from alignment at P-littoralis_Contig203:158479..164787-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.43.2 ID=mRNA_P-littoralis_Contig203.43.2|Name=mRNA_P-littoralis_Contig203.43.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=6309bp|location=Sequence derived from alignment at P-littoralis_Contig203:158479..164787- (Pylaiella littoralis U1_48)
TACGATGTCCCACAGGCATGTTTATTCGAGACGAGGGGCGACGCATTTCG
AAGGCGATGGCGGTTTCGGCGGCAGGTGGGGAGGGGGTAGAAGCGGGAGG
GGGGGAGGGTGCAGATGCGGGAGGTGATGCAAGCGACGTGGCGCAATCGC
AAGGGGAGGTGCGTGGGAAAGCGGCGTTTTTTACATTTTGGTTGCTCTTG
TTCTTGTTCATGTTCATGCTCATGTTCTTGTTCATGTTTTGTTTTCGTTG
TTGTTGTTCTTGTTGTTGCTGTTGTTGCTGTTGTTCTTGTTGTTTTTCTG
TGTTGTTGAGTTGTGGTTATTGTAGTTGTAGTTGTTGTTGTTGGTGGTGT
TCATGGTGGTCGTGGTGATGATGGTAGTGTTGGTGTTGCCGTCGTTTTTT
GTACAGGGTGCACGGGTACGCCCGCTGTGCGGGGGAAGGAAGAGAGAAAG
TACCGTACCGTACTGCAGATTTCGGCAGTCTCTCCAAAAAAATAATCGAT
TTTCTCACGTGCGCACAGCATACTACTTGAGTTGCTCTTGCTGGTGACGT
GGCGGCGTTCGGCGTGTCGTTGTTTTCAGAGCGGTCGGTGGGGGAAAGCA
AGGCTTGGTATGGCTCGCCGCGCGCCAACTCGTTGCGCATTTTTTTCTGT
CCAAACAGCAAAGATGGTTGACACAGAGTAGTTGGTTGACATTTCATATC
GTACTATGACTGGTATTATCGGTACGCAAGGATTGTAGGAGGGATAATGG
CGGTGCATAGTATGTCAGCTTGAGTTTGCACTGTGCCACAGAAGCAGCAA
GCTCAAAACAATCAAATTTACCTCAATACCCCTTGTCCCCCCGCGTCCAA
TTGTTGTTGGCCTCTGTTTTTGGGGTCAGGGTGTGGGGGAGGCGGCGAGA
CGACCAGTTGAGCCGGTCGGGGCACCGGGAGCGATGGAAGACGATATCCT
GATGGAGCTGGTGGGACAGGACTACGGCATGGTGCGTGGTACAGGGATAG
CCCACCAACCATCGAAGCACGCATCGTAGCGCAGCGGTAGGCAGAGGCAC
CAATCCAATTTCATCCGTGTGCAGCTTGCTTGCACCCCGTAACTTAAGCG
CGTTCGAAACCCATTGCCACACTTACGTGCGTAACCCATTGCTGTGCTGT
TCAAAGTGGTTCGCTTTCTATCCCACGCTGTTTTACCAGCTTACGTCATC
ACTTCGTCGCCAGGCTCTTCTTATTTGTCAAACTCCCAACGAAGACGTTC
ACGTGCAACTACTCGTATTTTTCAAGAAGTTTGCTTCGGTTTATGTGAGG
ACTTTTTGTTTTTTGTCCATCATATCGTCCATAGATACTTCATGACCTTC
GTCAGGCTCAGGCCCTGTCTATGTACAGGCATGTATCGCTCTCCGCTATC
GATGGCAGCGGTGTGCTCGTTCCTCAGAGAACGGCGGGCCCGCTATTGGC
TCATCGCCAAACCTTGTCATCCTGATGTTGGTTTCACCCCTGCCTGCTTG
CCTGATTTTCCTGTTCCGCATGTTCTGCCTGTTCTGCCTGTTCTGTTCTG
TATGTTTTGCCTGTTCTGTATGTTTTGCCTGTTGTGCCTGTTCTACCTGT
TCTGCCTGTCTTCCTGTTCTGCCTATTATTCCTGTTCTTCCTGTTCTTCC
TGTATTTTCTGTCTGCGGTCTGCCGGCTTCCCCGTCGAGAACAGATGGCC
CTCCTCCGTAACGACAAGTTCAAGGGTCTGATCGTGGTGAGCCAATCGAT
CAGTCCGACCTCTCTCGGAGACCCTACACAACGGCATGATCAAATGGATG
CCGCCGTCATTCAGATTTGTTGCCCTCCTATTTTGTTCCTCCCGCCTGTT
GCACGCGTGTGCACCAACGGGTGCCCAAGCCACCCTCCAAACGGCACGCC
CCTTAGCCCGTCACGTGCGGCTTGCTGCACATCCCCCTCCCCCCCCCCGT
GAATCAGCCATCGGTACACTGCTGTCCGGCGGCCGTTTCCCTGCCGCTTG
TTACAGGTTACTCACGTGATATCCCCACACGCACGCCACACGTAGGTTTC
TCCCCCCCCCCTGTCTTGACTTGTATGCCCCCCCTTCCCCCTGTTTCCCC
CCCCTCAAAACGTAACCGCCATATGATAGTGCGCGGCAGCCGAGTACGGT
ACTCGATACCATACCCCCACACGCACGCCACACCTTTTGGGTTGGCTTTG
CTCCGCCCCCCTGTCTTGACTTGTATGCCCCGCTTCGCCCTTTTTCCCGT
AATAACGCAACCACCCCAATAACGCAACCACCGTACTGCACGGCGGCCGA
GAGCACAACGTTTCTTCCATTGCCGCTCATTACAACACGAGAGGACGCCA
CCTGACACGTACCCCCCTACACTCACTCGTCTGTCTGACTGGTAGGCTTT
CGATCCGTCCCTTTCCTCGACTTGTGTGTATGTCTGTCGCCTCCCCCTTC
CCACCCACGCCGACCGATGTACACACGATGCCGATGCAGTTGTTGAGGAA
CGTCCCGCCGAACGAGTGGGTTTCCGAGGTGGCGAGGGCGTATCCCGATG
ACGACGAGGTGAGAGTAACGCAGGTTCGGGACTTCTTTCTTTGTTGTTTT
TCGCGCGAGGGGGTCAGGGTTCTGCCTTTCTTCTGAAAATAAAAAGGCAA
GCATTACGTACAGGATAGGAGGAAGGCAAGGTGAGGAGCCTCAGGGCAAG
AAACCCTTCTGTGTGACTACTTGTGGGCCCAGCTGGTTCGCTCAAATGTG
TGCTTACCAAATTTAGAGGTGTTGTAGACTGCCGTTCAGAACCGATGAGA
TGAGCTCATCCACAAAAAAAAAACTGCTGCACACCTACAAACATCGACAA
AGTCTTTTGTTGGGGCACTGCTTGCCTCTTACAGTGTAAGCTAAAAAAAA
AACACTGGTCTCATAATGAACACGGTAATTTATCTGGTTCCCGAGGAGTC
GATCCTCTGGCCTGGTATCCTTCATTATTTCTCTTTTTTTTTTTGGTAAG
CTGCTGGGCTTTGCTGCTGTGTACGGTTACCTCTGCTGGTGAAGTGAGTT
TTACCCTGTTCACTCAAGGCTGCATTACGTACTGCACTTCGCCGCGTCGA
AAAAGGAATGCCCCAACAAACACAAACAAAAATACCAACACGGTGTTGTG
TGTGTGTGTTGTCATCCCTTTAATTGGACGGCACTCTGCACCTTTCGGGT
AGATTGACGCTCCAACTGGGGTCACACAGGGAGAAGTCAACACAGGACTT
TTTTTTTTTTTCCACTTCCCTCTGCGGTACTTGCATTGTTTTTGGTTGAG
CTTGTATCGCGAGAAAGGGGACAGCAATCCCTTTCCCTCGTCGATGGTAC
GATCGAATTTTGTTTACTCACGAATTAGTCGTTTTCCACTTTCACGCGCA
TTGTGAGAAGAAAACCCAGATCGTGTTGTGTGTGTGTTGTGTGTGTTGTC
GTCCCTTTAATTGGACGCCACTCTACACCTTTCGGGTAGGTCGCCGCTCC
AACTGGGGTCACACAGGGGGAAGTCAACCTAGGAGTTTTTTTTTCTTTTT
TTTTCTCCACTTCCCTCTGCGGTGTTTGCCTTGTTTGGTTGAGCTATTAT
CGCGAGAAAGGGGACAGCAATCCCTTTCCCTCGTCGATGGTATGATCGAA
TTTTGTTTACTCACGAATTAAATCGCTTTCCACTCACTCGCATTGTGAGA
AGAAAACCCAGATCGTGTTACTGCACTGGGATTCGATCTCACCCGTGAAT
GTCAGAAGGTTACTTGAATTACCAACTGAACCACCGGGGCGACCTGACAT
TGCGGCAGTGTATGCATCTTAAATACCAACACGGTATGCATGAATGTAAA
AGTTTGCTTGTTTGTATTCCACGCGGACGAGATTTTCTTAAGCGCCTTCT
TACGGCACCGATACATGTTTGTGTAGCGTGCGCATGCGTATGATATGCAT
TTTATGTGCGTACACTCGGAGTAGGGGGTGAATGAGAGGGAGTGTGTGTG
TGTGCGTGTGTGTGCCTCGGCGCATCTTCCGCGGAGGAGGCGGTGCACCA
AGTCGCCGTTTCTGTCAAAACAACAGCAATTGCACTGTTTTGACCAAAGC
AAAGACCCCCGACCACGGCTCAACCCATTACTACTGCTGCACGATACGCG
ACGCTCGTACCCGTCCCTCAAACGATCTTCAAAGCGCTCCGCAGCGCTCC
ACATACATGCAGATCGATGTTTCGAGAATCTCGACTCGTCGAGAAGTTTC
TCTCCCATACGAGCGTACCGTTCGACTCGGCCATCTTTGTTCGTGTGGTG
CATGTAGCTGTTTTTTTTTTTTTCCCGAGCGGTTCGGGGGGTCGCGTGGT
TTCAAACGCGACCTACGCTAGACGAACGGGGTTGTGTACATGATTGTTCG
TTCATGGTCGTCAAGAAAACGCGTTCTTGAAAAGTTGCTGGGAGGGCTGG
GTTGGCCTGAAATGGCCCATCGTGGGATTTACTTGTAACCGTCCAGTGTG
TGCGTGTGTGTGTTTCTTTTTTCGTCCCGTATATTCTGGGCACCAGTCTA
CACCTTCCGGTATGAAGTAGGTGCACTAGCCGGGGCCACACAGCACGAGG
AAAGGTCATGCACAGGAGTGTTTTTTTTTTTTGCCTCAATCCACCTTTTG
CGGTGCTTGCCTTTTTTTTTGCTCCTCCAGCTTCTTATCCCGAGAAGGGG
TTCAACCATCGCTTACCCCCGTCAACTGCTGTTGTTGATCGAACGTGTTT
GTATGATATACTCGCGACAAGTTGAACAATGTAATTGTTTTCTCGCGGCA
GCAGTGGTGAGTGACAAAATGTGTACCTCAACTTATTTCGCAAGTCTGAC
TACTCCACAGCAAGAAGACAGGCGTAAAGTTCTGTCAGCGCCGGTGATGG
TGACGATAGAAATACGCCGTCCGTCGAGAGCTTTTCGAAAAAATCATACG
AAGTACAATATGTACGTACGTCGCATTAAAAAACGAGAAGCAAGTGCCGC
AGGAGGAAAGGTGTGGGCAATGAAAAATAAATAAAAGTTCGTGTGTGACC
TTCCTTCTGTGTGACCCTGGCTGGTGCACCCACTTCATACCGAAAGGTGT
GTTATAGACCGGTGCCTAGAATAAATGGGATGGAACAGACACAAATCATA
TCGTTTTGCATCAGCATCCTCTTCGCTACGGCGCAGTCGACAGGTCTGTA
GATCACCGGTCCAAGGAGGGTGTGGTATCTTATGGCGTGTCACCTGCGTT
GCTTGGAGTGCATTGTCCTCCCGGCCGGTTTTGTCTGCTGTGCCTCGTAG
TTTGTGACCACACAGGCCACGGGCTGTAGGTTTTGGCGATGAGCCAGCGT
GAAGAATCAACGAACGAAACAGCACGGGCACTACGATACCTTATATGGTG
TTCCCTGTGCCTGTCGGCGCACTTCGTTCCCGCAACGACGTATTATATGC
ACGAGTACAGGCAGGCTGACATTGGGCCGTTTTTTTACGCACGTACTTCG
AAGTATATACATTGCACCAACCCTGTACGTCACCTGTAACCCTACCTAAT
CCCGATCTTGCCGCTCTCGAACCGAACGAAAACCAGGTCAAGGGGATGAT
GGGACAAGTGGGGAAGCTGATGCGGATGATCGACTACTACCAGGCGAAGA
AGCTCAAGAAGTAAAAGCGACACGGCGAGGAACATTTATCGGACGACAGT
TTCGCTGCTTGTTGGCAGCAGTGGTGTTGCCGCCGCGCGCTCCAGTGTAT
GGCGTTGCCACCAGCAGCGTAGCGTAGGCCTTACAGTAGGTACACGTCTT
ATTTCCTTGTCGAGGATGAACGGGCGACGTCAAGAATCTTACTTTCGAGC
ATGACAGTGTATATCGCAACGCTTGTAAACGGCTGCAAGGCCAGGGTCAT
CTTTACGGTGCGCTTGGTGGAAACCATGACACGGATGAAGACGTACACTC
GTTTGCGGATAAGGGGATGGTTTGACTGCCTCTGAGCACGCTACATGCTG
TTGTTTTCGATGAACGAAACGGATTTTTTTTCCCTGTTCCCGTTTTTTGC
GTGCGTCTGTCAGACGATTGACACCCTTGTGGGGCGTTTTTTGGCAGCCT
TGGTAGCTCGATCGCAGAAGGAGAACGAACCAACGACGGTAACTTTGCGT
TTTTCAGCCCGGAGCGCTCGCTGTCCTTTCGCGGCCCCACGAGGACTGTC
GCGCGACTACGCCTGTATCGGCGGTCAACAACTGCTGTGAAGGACCAAAT
GCATTGAAAGTCGAACCCGTTTTTTCGACCGCCGGAACGAGGCCTGCGCC
TGCCCTACC
back to top

Coding sequence (CDS) from alignment at P-littoralis_Contig203:158479..164787-

>mRNA_P-littoralis_Contig203.43.2 ID=mRNA_P-littoralis_Contig203.43.2|Name=mRNA_P-littoralis_Contig203.43.2|organism=Pylaiella littoralis U1_48|type=CDS|length=432bp|location=Sequence derived from alignment at P-littoralis_Contig203:158479..164787- (Pylaiella littoralis U1_48)
ATGTTTATTCGAGACGAGGGGCGACGCATTTCGAAGGCGATGGCGGTTTC
GGCGGCAGGTGGGGAGGGGGTAGAAGCGGGAGGGGGGGAGGGTGCAGATG
CGGGAGGTGATGCAAGCGACGTGGCGCAATCGCAAGGGGAGGGTGTGGGG
GAGGCGGCGAGACGACCAGTTGAGCCGGTCGGGGCACCGGGAGCGATGGA
AGACGATATCCTGATGGAGCTGGTGGGACAGGACTACGGCATGATGGCCC
TCCTCCGTAACGACAAGTTCAAGGGTCTGATCGTGTTGTTGAGGAACGTC
CCGCCGAACGAGTGGGTTTCCGAGGTGGCGAGGGCGTATCCCGATGACGA
CGAGGTCAAGGGGATGATGGGACAAGTGGGGAAGCTGATGCGGATGATCG
ACTACTACCAGGCGAAGAAGCTCAAGAAGTAA
back to top