mRNA_P-littoralis_Contig203.42.1 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.42.1
Unique NamemRNA_P-littoralis_Contig203.42.1
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.42.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:158039..158501 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size465
Hectar predicted targeting categorymitochondrion
Exons1
Cds size402
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.6140423-CDS-P-littoralis_Contig203:158038..1584401680789993.6140423-CDS-P-littoralis_Contig203:158038..158440Pylaiella littoralis U1_48CDSP-littoralis_Contig203 158039..158440 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.6270955-UTR-P-littoralis_Contig203:158440..1585011680789993.6270955-UTR-P-littoralis_Contig203:158440..158501Pylaiella littoralis U1_48UTRP-littoralis_Contig203 158441..158501 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.42.1prot_P-littoralis_Contig203.42.1Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 158039..158440 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.42.1

>prot_P-littoralis_Contig203.42.1 ID=prot_P-littoralis_Contig203.42.1|Name=mRNA_P-littoralis_Contig203.42.1|organism=Pylaiella littoralis U1_48|type=polypeptide|length=134bp
LFKIFFAGSRTQFPVRCLTSISVWRVPARCVFRLVVPCLALQSIVRVEVA
SVAQVHIERFYTSLLQRGGPKVDRPNGGKTAGIITKVPSPTTPLSFGHSL
CSSPQHPQQQIDGVQKTRIALCTCAEERVSPLN*
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mRNA from alignment at P-littoralis_Contig203:158039..158501+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.42.1 ID=mRNA_P-littoralis_Contig203.42.1|Name=mRNA_P-littoralis_Contig203.42.1|organism=Pylaiella littoralis U1_48|type=mRNA|length=463bp|location=Sequence derived from alignment at P-littoralis_Contig203:158039..158501+ (Pylaiella littoralis U1_48)
TTGTTCAAAATATTTTTTGCAGGAAGTAGGACACAATTTCCCGTCCGCTG
CCTTACCTCCATCTCTGTTTGGCGCGTGCCGGCTCGTTGTGTGTTTCGGT
TAGTAGTCCCATGCCTGGCTTTGCAGAGCATTGTTCGTGTTGAGGTTGCC
AGCGTGGCACAGGTGCACATCGAGAGGTTTTACACCAGCCTTCTGCAGAG
AGGAGGACCGAAGGTTGATCGACCTAATGGTGGGAAAACTGCGGGCATCA
TCACCAAAGTGCCTTCCCCCACCACACCGTTGAGTTTCGGCCACTCGTTA
TGCTCCAGCCCGCAGCACCCTCAGCAGCAGATAGATGGTGTGCAGAAGAC
TCGAATAGCACTCTGTACTTGCGCTGAAGAGCGGGTGAGCCCACTCAACT
AGTTGATTTTCTGGACCAGTGCCTAGAGGTGAAGGGTAAGGGTAGGGCAG
GCGCAGGCCTCGT
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Coding sequence (CDS) from alignment at P-littoralis_Contig203:158039..158501+

>mRNA_P-littoralis_Contig203.42.1 ID=mRNA_P-littoralis_Contig203.42.1|Name=mRNA_P-littoralis_Contig203.42.1|organism=Pylaiella littoralis U1_48|type=CDS|length=402bp|location=Sequence derived from alignment at P-littoralis_Contig203:158039..158501+ (Pylaiella littoralis U1_48)
TTGTTCAAAATATTTTTTGCAGGAAGTAGGACACAATTTCCCGTCCGCTG
CCTTACCTCCATCTCTGTTTGGCGCGTGCCGGCTCGTTGTGTGTTTCGGT
TAGTAGTCCCATGCCTGGCTTTGCAGAGCATTGTTCGTGTTGAGGTTGCC
AGCGTGGCACAGGTGCACATCGAGAGGTTTTACACCAGCCTTCTGCAGAG
AGGAGGACCGAAGGTTGATCGACCTAATGGTGGGAAAACTGCGGGCATCA
TCACCAAAGTGCCTTCCCCCACCACACCGTTGAGTTTCGGCCACTCGTTA
TGCTCCAGCCCGCAGCACCCTCAGCAGCAGATAGATGGTGTGCAGAAGAC
TCGAATAGCACTCTGTACTTGCGCTGAAGAGCGGGTGAGCCCACTCAACT
AG
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