mRNA_P-littoralis_Contig203.19.2 (mRNA) Pylaiella littoralis U1_48

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_P-littoralis_Contig203.19.2
Unique NamemRNA_P-littoralis_Contig203.19.2
TypemRNA
OrganismPylaiella littoralis U1_48 (Pylaiella littoralis U1_48 (Mung))
Homology
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BLAST of mRNA_P-littoralis_Contig203.19.2 vs. uniprot
Match: D8LQZ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQZ7_ECTSI)

HSP 1 Score: 180 bits (457), Expect = 1.050e-47
Identity = 98/124 (79.03%), Postives = 105/124 (84.68%), Query Frame = 1 
Query:  424 LSQWEIDLAKAAGTWEGEGAEAVVDEKERCRQWCNIANDSLQAER-------RKGEGKLGVGGTARHRRLRQLVDAAELNSSFFLVPGLSDKQVLRVQRLVYKVETAFSNLDAARARPPPVASF 774
            LS WE++LAKAAGTWEG G   V DEKERCRQWC IA  SLQAE        R+GEGKL  GGTARH+RLRQLVDAAELNSSFFLVPGL+DKQVLRVQRLVYKVETAFS+L+AARARPPPVASF
Sbjct:   88 LSPWEMELAKAAGTWEGTGG--VGDEKERCRQWCMIAKASLQAEEKEREKDNRRGEGKL-TGGTARHQRLRQLVDAAELNSSFFLVPGLNDKQVLRVQRLVYKVETAFSSLEAARARPPPVASF 208
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BLAST of mRNA_P-littoralis_Contig203.19.2 vs. uniprot
Match: A0A6H5L231_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L231_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 2.980e-9
Identity = 38/58 (65.52%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  424 LSQWEIDLAKAAGTWEGEGAEAVVDEKERCRQWCNIANDSLQAE-------RRKGEGK 576
            LS WE++LAKAAGTWEG G   V DEKERCRQWC IA  SLQAE       +R+GEGK
Sbjct:  556 LSPWEMELAKAAGTWEGPGG--VGDEKERCRQWCMIAKASLQAEEKEREKDKRRGEGK 611
The following BLAST results are available for this feature:
BLAST of mRNA_P-littoralis_Contig203.19.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQZ7_ECTSI1.050e-4779.03Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L231_9PHAE2.980e-965.52Protein kinase domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
P-littoralis_Contig203contigP-littoralis_Contig203:74368..77439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Pylaiella littoralis U1_48 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size2082
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_002240.1
Cds size1053
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.0967798-UTR-P-littoralis_Contig203:74367..753961680789993.0967798-UTR-P-littoralis_Contig203:74367..75396Pylaiella littoralis U1_48UTRP-littoralis_Contig203 74368..75396 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789993.109144-CDS-P-littoralis_Contig203:75396..757681680789993.109144-CDS-P-littoralis_Contig203:75396..75768Pylaiella littoralis U1_48CDSP-littoralis_Contig203 75397..75768 -
1680789993.1189876-CDS-P-littoralis_Contig203:76052..761571680789993.1189876-CDS-P-littoralis_Contig203:76052..76157Pylaiella littoralis U1_48CDSP-littoralis_Contig203 76053..76157 -
1680789993.1288314-CDS-P-littoralis_Contig203:76863..774391680789993.1288314-CDS-P-littoralis_Contig203:76863..77439Pylaiella littoralis U1_48CDSP-littoralis_Contig203 76864..77439 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_P-littoralis_Contig203.19.2prot_P-littoralis_Contig203.19.2Pylaiella littoralis U1_48polypeptideP-littoralis_Contig203 75397..77439 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_P-littoralis_Contig203.19.2

>prot_P-littoralis_Contig203.19.2 ID=prot_P-littoralis_Contig203.19.2|Name=mRNA_P-littoralis_Contig203.19.2|organism=Pylaiella littoralis U1_48|type=polypeptide|length=351bp
ADDPGAGSTGAGRSCCAHFGCCGAAAAAAPGGRRASASPPPRCSCCGRRG
RRRRGRRQRRVCAGAAAAAAAAPAASAGPCFPSQGRHRAERFANGRGGHR
RASATAPPAPATIRPGVGTPAPPPEPEPEPGSEPLPVPPAPLSQWEIDLA
KAAGTWEGEGAEAVVDEKERCRQWCNIANDSLQAERRKGEGKLGVGGTAR
HRRLRQLVDAAELNSSFFLVPGLSDKQVLRVQRLVYKVETAFSNLDAARA
RPPPVASFTQSTSSGGSRSGLSRRESSGGSISGTVSGTASDGGGVSSAKR
PRYRFDRDEDDRDLDALVNGSGGGGGGRGGGGGKRSRSNEAFASARAVRS
*
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mRNA from alignment at P-littoralis_Contig203:74368..77439-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_P-littoralis_Contig203.19.2 ID=mRNA_P-littoralis_Contig203.19.2|Name=mRNA_P-littoralis_Contig203.19.2|organism=Pylaiella littoralis U1_48|type=mRNA|length=3072bp|location=Sequence derived from alignment at P-littoralis_Contig203:74368..77439- (Pylaiella littoralis U1_48)
GCCGATGATCCCGGGGCTGGGTCTACAGGGGCCGGGAGGAGTTGCTGCGC
CCACTTCGGGTGCTGTGGGGCCGCCGCCGCCGCCGCCCCCGGCGGGAGGA
GGGCCTCCGCCTCCCCCCCCCCACGCTGCTCCTGTTGCGGACGGCGGGGG
CGCCGGAGGAGGGGGCGGCGGCAGCGGCGTGTTTGCGCCGGGGCCGCCGC
CGCTGCCGCTGCCGCCCCCGCCGCCTCCGCCGGGCCGTGCTTCCCCTCCC
AGGGACGCCATCGGGCAGAACGGTTCGCAAACGGGCGCGGGGGGCATCGA
CGGGCCTCCGCTACCGCCCCCCCCGCCCCCGCCACCATCAGGCCCGGGGT
CGGCACCCCCGCCCCCCCGCCGGAGCCGGAGCCGGAGCCGGGGTCAGAGC
CGCTGCCGGTACCGCCGGCGCCGTTGTCGCAGTGGGAGATCGATCTGGCG
AAGGCCGCCGGGACGTGGGAAGGGGAAGGGGCCGAAGCGGTCGTAGACGA
GAAGGAACGGTGTCGGCAGTGGTGCAACATCGCCAACGATTCGCTTCAGG
CCGAGAGGAGGAAAGGGGAAGGAAAGGTAGGCGGCCAAGCCGGGCCTGTG
GGTTCTATGGCAGTTTTCGCGATCGGGGTGGCTGGCTGCATGTTTCGTGT
CATTTTGTGCCTTCCATTTTTTGTTGCCCTTGTTTATCTTGGTGGCCTGG
GAGCAAGACACGCGCATGACTTCGTGTTCAGTCCTGACCTGGAGTCATTG
AACAGCCGTGTGATTGCTGCCCCCCCCCCCCGACAGCAATACGTCTATAC
GAATTGTGATTTTTTTGTCCTAGGTTTAGTGCGTTTCTTTGCCCAAAAAC
GTCGAAGTAACCGCGCCCGCGAGAGACTGAATCACGCCTGTAAAGCAAGG
TGGATCCCCTTATGATAGGTCCTGTTTTTTTTTCTGCGATGGAAATACCC
GGCATTCAAAGCACGAAGTTTTTCATCGCGTACGCACCGTTGGATTTAGT
AGGGAGCATGGACTACTGTGGCACCTGGTGAAGCGACGCACCCGCATGGC
CTGTAGTCTGTGGCGGTATTAAATCATCCGTCTGTTGTTACATTCATATT
TTCTTCGTGTTGTGGCCTAGACAATCCAGAGCGATCGATGTTGACTTTCG
AAGTGTTTGTTCTGGTTTTCAACTGTCTTTTGTGGAGTTCCCGATACACG
CATAGAGTCACGTGAGTCGATCAACTTTGTGCCTCACGGCTACGGCGATG
TGGCGTGTGTGTGTCGTGTGACGTGCGAACAGCTGGGCGTCGGCGGAACC
GCGAGGCACAGACGGCTGCGGCAGCTTGTGGACGCCGCGGAGCTAAACTC
TTCTTTCTTCCTGGTGCCAGGACTGAGCGATAAGCAGGTACGAAGTATAT
ATGAGCGCGGGGTGGATAGGATGCCTGTCTTTGCCGCTTGTCGGACGAAG
GATGTCGCCTCACACGCCGCCACCGCCGGTCCCCTGACCCCACCCCCCCC
ACCCCCAGGCGGCCGCATTTGACCACTTTGCTTGTCTACGATCGGCACCC
ATGAGACAGTTTCCCATCATGCATGCCGTGCCCCCTGTCTTTCTTCTTCG
GGAGTGGAGACGCCTACATTTTATCAACCAACGCCCTTTGTTCCCCCCCC
CTTTATCCCCGCTCCTCGCAGGTTTTACGCGTCCAGCGTCTAGTGTACAA
GGTCGAGACAGCGTTCTCAAACCTCGATGCCGCTAGAGCCCGCCCCCCAC
CCGTCGCGTCCTTTACCCAGTCAACGAGCTCGGGGGGCTCGCGCTCCGGC
CTGTCGCGACGCGAGAGCAGCGGCGGTAGCATCAGCGGGACTGTCAGCGG
GACGGCCAGCGACGGGGGCGGGGTTTCTAGCGCGAAGCGGCCGCGTTATC
GATTCGACAGGGATGAGGACGACCGCGACCTTGACGCCCTTGTGAACGGT
AGCGGCGGTGGCGGCGGCGGTAGAGGTGGGGGAGGGGGGAAGAGGAGCAG
GAGTAACGAGGCGTTCGCGTCTGCAAGGGCTGTTCGGTCGTGAGACCATC
GCCCGCACGGGGTCGTGCTTTTAGAGAGTTTTTTGCGCGCTTGCAACGGG
CGCGACAACGCCGCCCAGAACGCGGAACTCCTTTTAGATGGGGTTCAAAG
AACCCTCCGTCTCGATTCACAGGGAAGGGCGAGTGTGGAGCTACCCCTTA
AGCAGTTTTTTTTAGATTGGGCCGGACAAGACGTTCCGGCGTGCGCCTTA
GCTTGTTCATGCCGGAGACAAAACACCGAACTGATGACGTGCTTTTCTTT
GTTGAAGACGAGATATGCAAGTAAACACTGCTGTATCGGAGTTTATATCA
TGATCATGGACCACTTTCGTGTCAACTCTCTTCATCAGTGCGCAGATGGA
ATATCGACAAAATTGGACGGTTTGGTCTTCCTTGTGCTAGTCTCGGGTGC
TGTGTCTAGGCTCGGTGTTTTAGACGGCGTGTTTTAGATGACGGCAACCT
TTGTATCGTACTTCGTACGTCTCTTTTTTTGTCGTGGAAATTTTAAAGGT
TGAAGCAGAGCAAGCCTCGTTGGTTGGGTCGATGTGAAGCAGGTCAAGAT
CGCATTCGATTCCGCTTGATCGTTAAGCGAGTAAATTTACTTGCACACCA
GACATTCGCAGCGTGTTGTTTTTCTGCTTCCCATCATCTAAATTTGGAGC
AGTGCGTGAGGATGTGAGGGGGGTAAAAACTTTGGTTGACTGCTGGCGAT
TTTGAGAAACAAACGACACACGAGAAGAGTCCGTGGCATTGTATTCGGCC
GCCGAATTTCTGCCTTTTTTTTTAATTTTTGCCCCAGTACGTAACCCACC
CCGTCTTTTTCCGCATTATTGCCGCAAGAGATGGGTGGTCTTGGAGCATG
GTATTTTATGTCTACCCATGTTGTTTTCCGCCCGTAATTATTACCACTCT
GGTCCGAAATATAGCTGGGATTTGAAAATACCGGAATATAGGTGGGATTC
TAGTTAAGCATGATGGTAACGATTTCAGCCTGTGAGACTCCGCGGCAATA
ATCCTACAGCCTATATAAGATA
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Coding sequence (CDS) from alignment at P-littoralis_Contig203:74368..77439-

>mRNA_P-littoralis_Contig203.19.2 ID=mRNA_P-littoralis_Contig203.19.2|Name=mRNA_P-littoralis_Contig203.19.2|organism=Pylaiella littoralis U1_48|type=CDS|length=1053bp|location=Sequence derived from alignment at P-littoralis_Contig203:74368..77439- (Pylaiella littoralis U1_48)
GCCGATGATCCCGGGGCTGGGTCTACAGGGGCCGGGAGGAGTTGCTGCGC
CCACTTCGGGTGCTGTGGGGCCGCCGCCGCCGCCGCCCCCGGCGGGAGGA
GGGCCTCCGCCTCCCCCCCCCCACGCTGCTCCTGTTGCGGACGGCGGGGG
CGCCGGAGGAGGGGGCGGCGGCAGCGGCGTGTTTGCGCCGGGGCCGCCGC
CGCTGCCGCTGCCGCCCCCGCCGCCTCCGCCGGGCCGTGCTTCCCCTCCC
AGGGACGCCATCGGGCAGAACGGTTCGCAAACGGGCGCGGGGGGCATCGA
CGGGCCTCCGCTACCGCCCCCCCCGCCCCCGCCACCATCAGGCCCGGGGT
CGGCACCCCCGCCCCCCCGCCGGAGCCGGAGCCGGAGCCGGGGTCAGAGC
CGCTGCCGGTACCGCCGGCGCCGTTGTCGCAGTGGGAGATCGATCTGGCG
AAGGCCGCCGGGACGTGGGAAGGGGAAGGGGCCGAAGCGGTCGTAGACGA
GAAGGAACGGTGTCGGCAGTGGTGCAACATCGCCAACGATTCGCTTCAGG
CCGAGAGGAGGAAAGGGGAAGGAAAGCTGGGCGTCGGCGGAACCGCGAGG
CACAGACGGCTGCGGCAGCTTGTGGACGCCGCGGAGCTAAACTCTTCTTT
CTTCCTGGTGCCAGGACTGAGCGATAAGCAGGTTTTACGCGTCCAGCGTC
TAGTGTACAAGGTCGAGACAGCGTTCTCAAACCTCGATGCCGCTAGAGCC
CGCCCCCCACCCGTCGCGTCCTTTACCCAGTCAACGAGCTCGGGGGGCTC
GCGCTCCGGCCTGTCGCGACGCGAGAGCAGCGGCGGTAGCATCAGCGGGA
CTGTCAGCGGGACGGCCAGCGACGGGGGCGGGGTTTCTAGCGCGAAGCGG
CCGCGTTATCGATTCGACAGGGATGAGGACGACCGCGACCTTGACGCCCT
TGTGAACGGTAGCGGCGGTGGCGGCGGCGGTAGAGGTGGGGGAGGGGGGA
AGAGGAGCAGGAGTAACGAGGCGTTCGCGTCTGCAAGGGCTGTTCGGTCG
TGA
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